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  • IOP Publishing  (5)
  • American Chemical Society
  • American Chemical Society (ACS)
  • American Society of Hematology
  • Blackwell Publishing Ltd
  • 2020-2023  (7)
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  • 1
    Publication Date: 2022-05-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hand, K., Phillips, C., Murray, A., Garvin, J., Maize, E., Gibbs, R., Reeves, G., San Martin, A., Tan-Wang, G., Krajewski, J., Hurst, K., Crum, R., Kennedy, B., McElrath, T., Gallon, J., Sabahi, D., Thurman, S., Goldstein, B., Estabrook, P., Lee, S. W., Dooley, J. A., Brinckerhoff, W. B., Edgett, K. S., German, C. R., Hoehler, T. M., Hörst, S. M., Lunine, J. I., Paranicas, C., Nealson, K., Smith, D. E., Templeton, A. S., Russell, M. J., Schmidt, B., Christner, B., Ehlmann, B., Hayes, A., Rhoden, A., Willis, P., Yingst, R. A., Craft, K., Cameron, M. E., Nordheim, T., Pitesky, J., Scully, J., Hofgartner, J., Sell, S. W., Barltrop, K. J., Izraelevitz, J., Brandon, E. J., Seong, J., Jones, J.-P., Pasalic, J., Billings, K. J., Ruiz, J. P., Bugga, R. V., Graham, D., Arenas, L. A., Takeyama, D., Drummond, M., Aghazarian, H., Andersen, A. J., Andersen, K. B., Anderson, E. W., Babuscia, A., Backes, P. G., Bailey, E. S., Balentine, D., Ballard, C. G., Berisford, D. F., Bhandari, P., Blackwood, K., Bolotin, G. S., Bovre, E. A., Bowkett, J., Boykins, K. T., Bramble, M. S., Brice, T. M., Briggs, P., Brinkman, A. P., Brooks, S. M., Buffington, B. B., Burns, B., Cable, M. L., Campagnola, S., Cangahuala, L. A., Carr, G. A., Casani, J. R., Chahat, N. E., Chamberlain-Simon, B. K., Cheng, Y., Chien, S. A., Cook, B. T., Cooper, M., DiNicola, M., Clement, B., Dean, Z., Cullimore, E. A., Curtis, A. G., Croix, J-P. de la, Pasquale, P. Di, Dodd, E. M., Dubord, L. A., Edlund, J. A., Ellyin, R., Emanuel, B., Foster, J. T., Ganino, A. J., Garner, G. J., Gibson, M. T., Gildner, M., Glazebrook, K. J., Greco, M. E., Green, W. M., Hatch, S. J., Hetzel, M. M., Hoey, W. A., Hofmann, A. E., Ionasescu, R., Jain, A., Jasper, J. D., Johannesen, J. R., Johnson, G. K., Jun, I., Katake, A. B., Kim-Castet, S. Y., Kim, D. I., Kim, W., Klonicki, E. F., Kobeissi, B., Kobie, B. D., Kochocki, J., Kokorowski, M., Kosberg, J. A., Kriechbaum, K., Kulkarni, T. P., Lam, R. L., Landau, D. F., Lattimore, M. A., Laubach, S. L., Lawler, C. R., Lim, G., Lin, J. Y., Litwin, T. E., Lo, M. W., Logan, C. A., Maghasoudi, E., Mandrake, L., Marchetti, Y., Marteau, E., Maxwell, K. A., Namee, J. B. Mc, Mcintyre, O., Meacham, M., Melko, J. P., Mueller, J., Muliere, D. A., Mysore, A., Nash, J., Ono, H., Parker, J. M., Perkins, R. C., Petropoulos, A. E., Gaut, A., Gomez, M. Y. Piette, Casillas, R. P., Preudhomme, M., Pyrzak, G., Rapinchuk, J., Ratliff, J. M., Ray, T. L., Roberts, E. T., Roffo, K., Roth, D. C., Russino, J. A., Schmidt, T. M., Schoppers, M. J., Senent, J. S., Serricchio, F., Sheldon, D. J., Shiraishi, L. R., Shirvanian, J., Siegel, K. J., Singh, G., Sirota, A. R., Skulsky, E. D., Stehly, J. S., Strange, N. J., Stevens, S. U., Sunada, E. T., Tepsuporn, S. P., Tosi, L. P. C., Trawny, N., Uchenik, I., Verma, V., Volpe, R. A., Wagner, C. T., Wang, D., Willson, R. G., Wolff, J. L., Wong, A. T., Zimmer, A. K., Sukhatme, K. G., Bago, K. A., Chen, Y., Deardorff, A. M., Kuch, R. S., Lim, C., Syvertson, M. L., Arakaki, G. A., Avila, A., DeBruin, K. J., Frick, A., Harris, J. R., Heverly, M. C., Kawata, J. M., Kim, S.-K., Kipp, D. M., Murphy, J., Smith, M. W., Spaulding, M. D., Thakker, R., Warner, N. Z., Yahnker, C. R., Young, M. E., Magner, T., Adams, D., Bedini, P., Mehr, L., Sheldon, C., Vernon, S., Bailey, V., Briere, M., Butler, M., Davis, A., Ensor, S., Gannon, M., Haapala-Chalk, A., Hartka, T., Holdridge, M., Hong, A., Hunt, J., Iskow, J., Kahler, F., Murray, K., Napolillo, D., Norkus, M., Pfisterer, R., Porter, J., Roth, D., Schwartz, P., Wolfarth, L., Cardiff, E. H., Davis, A., Grob, E. W., Adam, J. R., Betts, E., Norwood, J., Heller, M. M., Voskuilen, T., Sakievich, P., Gray, L., Hansen, D. J., Irick, K. W., Hewson, J. C., Lamb, J., Stacy, S. C., Brotherton, C. M., Tappan, A. S., Benally, D., Thigpen, H., Ortiz, E., Sandoval, D., Ison, A. M., Warren, M., Stromberg, P. G., Thelen, P. M., Blasy, B., Nandy, P., Haddad, A. W., Trujillo, L. B., Wiseley, T. H., Bell, S. A., Teske, N. P., Post, C., Torres-Castro, L., Grosso, C. Wasiolek, M. Science goals and mission architecture of the Europa Lander mission concept. The Planetary Science Journal, 3(1), (2022): 22, https://doi.org/10.3847/psj/ac4493.
    Description: Europa is a premier target for advancing both planetary science and astrobiology, as well as for opening a new window into the burgeoning field of comparative oceanography. The potentially habitable subsurface ocean of Europa may harbor life, and the globally young and comparatively thin ice shell of Europa may contain biosignatures that are readily accessible to a surface lander. Europa's icy shell also offers the opportunity to study tectonics and geologic cycles across a range of mechanisms and compositions. Here we detail the goals and mission architecture of the Europa Lander mission concept, as developed from 2015 through 2020. The science was developed by the 2016 Europa Lander Science Definition Team (SDT), and the mission architecture was developed by the preproject engineering team, in close collaboration with the SDT. In 2017 and 2018, the mission concept passed its mission concept review and delta-mission concept review, respectively. Since that time, the preproject has been advancing the technologies, and developing the hardware and software, needed to retire risks associated with technology, science, cost, and schedule.
    Description: K.P.H., C.B.P., E.M., and all authors affiliated with the Jet Propulsion Laboratory carried out this research at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration (grant No. 80NM0018D0004). J.I.L. was the David Baltimore Distinguished Visiting Scientist during the preparation of the SDT report. JPL/Caltech2021.
    Keywords: Europa ; Ocean planets ; Astrobiology ; Biosignatures
    Repository Name: Woods Hole Open Access Server
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  • 2
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kropp, H., Loranty, M. M., Natali, S. M., Kholodov, A. L., Rocha, A., V., Myers-Smith, I., Abbot, B. W., Abermann, J., Blanc-Betes, E., Blok, D., Blume-Werry, G., Boike, J., Breen, A. L., Cahoon, S. M. P., Christiansen, C. T., Douglas, T. A., Epstein, H. E., Frost, G., V., Goeckede, M., Hoye, T. T., Mamet, S. D., O'Donnell, J. A., Olefeldt, D., Phoenix, G. K., Salmon, V. G., Sannel, A. B. K., Smith, S. L., Sonnentag, O., Vaughn, L. S., Williams, M., Elberling, B., Gough, L., Hjort, J., Lafleur, P. M., Euskirchen, E. S., Heijmans, M. M. P. D., Humphreys, E. R., Iwata, H., Jones, B. M., Jorgenson, M. T., Gruenberg, I., Kim, Y., Laundre, J., Mauritz, M., Michelsen, A., Schaepman-Strub, G., Tape, K. D., Ueyama, M., Lee, B., Langley, K., & Lund, M. Shallow soils are warmer under trees and tall shrubs across arctic and boreal ecosystems. Environmental Research Letters, 16(1), (2021): 015001. doi:10.1088/1748-9326/abc994.
    Description: Soils are warming as air temperatures rise across the Arctic and Boreal region concurrent with the expansion of tall-statured shrubs and trees in the tundra. Changes in vegetation structure and function are expected to alter soil thermal regimes, thereby modifying climate feedbacks related to permafrost thaw and carbon cycling. However, current understanding of vegetation impacts on soil temperature is limited to local or regional scales and lacks the generality necessary to predict soil warming and permafrost stability on a pan-Arctic scale. Here we synthesize shallow soil and air temperature observations with broad spatial and temporal coverage collected across 106 sites representing nine different vegetation types in the permafrost region. We showed ecosystems with tall-statured shrubs and trees (〉40 cm) have warmer shallow soils than those with short-statured tundra vegetation when normalized to a constant air temperature. In tree and tall shrub vegetation types, cooler temperatures in the warm season do not lead to cooler mean annual soil temperature indicating that ground thermal regimes in the cold-season rather than the warm-season are most critical for predicting soil warming in ecosystems underlain by permafrost. Our results suggest that the expansion of tall shrubs and trees into tundra regions can amplify shallow soil warming, and could increase the potential for increased seasonal thaw depth and increase soil carbon cycling rates and lead to increased carbon dioxide loss and further permafrost thaw.
    Description: We thank G Peter Kershaw, LeeAnn Fishback, Cathy Wilson, and Coleen Iversen for assistance in collection of data. We thank the Permafrost Carbon Network for support and organization of the data synthesis. We thank Vladimir Romanovsky for his feedback and contribution of publicly available data. This project was supported by the National Science Foundation (Grant No. 1417745 to M L, Grant No. 1417700 to S M N, Grant No. 1417908 to A K, Grant No. 1556772 to A R, Grant No. 1637459 to L G, Grant No. 1636476 and Grant No. 1503912 to E S E, Grant No. 1806213 to B M J, Grant No. 1833056 to K D T), UK Natural Environment Research Council (Grant No. NE/M016323/1 to I H M S, Grant No. NE/K00025X/1 to G K P, Grant No. NE/K000292/1 to M W), Natural Sciences and Engineering Research (to P L, I H M S, Grant No. RGPIN-2016-04688 to D O), Council of Canada, Canadian Graduate Scholarship to (I H M -S), Greenland Ecosystem Monitoring Programme: ClimateBasis (to J A and K A), The Next-Generation Ecosystem Experiments (NGEE Arctic) project is supported by the Office of Biological and Environmental Research in the DOE Office of Science (to A L B), Engineer Research and Development Center Army Direct (6.1) Research Program and the Strategic Environmental Research and Development Program (projects RC-2110 and 18-1170 to T A D), United States Geological Survey (to E E S), Arctic Challenge for Sustainability (ArCS; Grant No. JPMXD1300000000) and ArCS II (Grant No. JPMXD1420318865) (to M U and H I), the Danish National Research Foundation (Grant No. CENPERM DNRF100 to B E), the Academy of Finland (Grant No. 315519), the National Research Foundation of Korea (Grant Nos. NRF-2016M1A5A1901769; KOPRI-PN20081 to K Y and B Y L), Research Network for Geosciences in Berlin and Potsdam (to I G), the Swiss National Science Foundation (Grant No. 140631 to G S S), the URPP Global Change and Biodiversity, University of Zurich (to G S S), the University of Alberta Northern Research Awards (to D O), and the Northern Scientific Training Program (to D O), and UT-Battelle, LLC, under contract DE-AC05-00OR22725 with the US Department of Energy (DOE) Office of Science, Biological and Environmental Research (to V G S). S M has been supported by grants and/or in-kind from Natural Sciences and Engineering Research Council of Canada, AMAX Northwest Mining, Co. (North American Tungsten Corp., Ltd), Imperial Oil, Ltd, University of Alberta, Earthwatch International (EI), The Garfield Weston Foundation, Wapusk National Park, Churchill Northern Studies Centre, and the Northern Scientific Training Program. All code for this project are archived (DOI: 10.5281/zenodo.4041165). The data that support the findings of this study are openly available through the Arctic Data Center (Heather Kropp, Michael Loranty, Britta Sannel, Jonathan O'Donnell, Elena Blanc-Betes, et al 2020. Synthesis of soil-air temperature and vegetation measurements in the pan-Arctic. 1990-2016. Arctic Data Center. doi:10.18739/A2736M31X).
    Keywords: Arctic ; Boreal forest ; Soil temperature ; Vegetation change ; Permafrost
    Repository Name: Woods Hole Open Access Server
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  • 3
    Publication Date: 2022-10-27
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chavarry, J. M., Law, K. L., Barton, A. D., Bowlin, N. M., Ohman, M. D., & Choy, C. A. Relative exposure to microplastics and prey for a pelagic forage fish. Environmental Research Letters, 17(6), (2022): 064038, https://doi.org/10.1088/1748-9326/ac7060.
    Description: In the global ocean, more than 380 species are known to ingest microplastics (plastic particles less than 5 mm in size), including mid-trophic forage fishes central to pelagic food webs. Trophic pathways that bioaccumulate microplastics in marine food webs remain unclear. We assess the potential for the trophic transfer of microplastics through forage fishes, which are prey for diverse predators including commercial and protected species. Here, we quantify Northern Anchovy (Engraulis mordax) exposure to microplastics relative to their natural zooplankton prey, across their vertical habitat. Microplastic and zooplankton samples were collected from the California Current Ecosystem in 2006 and 2007. We estimated the abundance of microplastics beyond the sampled size range but within anchovy feeding size ranges using global microplastic size distributions. Depth-integrated microplastics (0–30 m depth) were estimated using a depth decay model, accounting for the effects of wind-driven vertical mixing on buoyant microplastics. In this coastal upwelling biome, the median relative exposure for an anchovy that consumed prey 0.287–5 mm in size was 1 microplastic particle for every 3399 zooplankton individuals. Microplastic exposure varied, peaking within offshore habitats, during the winter, and during the day. Maximum exposure to microplastic particles relative to zooplankton prey was higher for juvenile (1:23) than adult (1:33) anchovy due to growth-associated differences in anchovy feeding. Overall, microplastic particles constituted fewer than 5% of prey-sized items available to anchovy. Microplastic exposure is likely to increase for forage fishes in the global ocean alongside declines in primary productivity, and with increased water column stratification and microplastic pollution.
    Description: This work originated from the Plastic Awareness Global Initiative (PAGI) international workshop, hosted by the Center for Marine Biodiversity and Conservation (CMBC) at Scripps Institution of Oceanography at the University of California San Diego in 2018, with support from Igor Korneitchouk and the Wilsdorf Mettler Future Foundation. We thank the workshop participants for early discussions and a collaborative meeting space. We thank Kelly Lance for her illustration contributions, and the SIO Communications Office for their support. We thank Miriam Doyle and Ryan Rykaczewski for their assistance in data acquisition, and we thank Penny Dockry and Stuart Sandin of CMBC for administrative and logistical support. Julia Chavarry was supported by the San Diego Fellowship. This paper is a contribution from the California Current Ecosystem Long Term Ecological Research site, supported by the National Science Foundation.
    Keywords: Upwelling ecosystems ; Food webs ; Climate change ; Engraulis mordax
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  • 4
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gosselin, K. M., Nelson, R. K., Spivak, A. C., Sylva, S. P., Van Mooy, B. A. S., Aeppli, C., Sharpless, C. M., O’Neil, G. W., Arrington, E. C., Reddy, C. M., & Valentine, D. L. Production of two highly abundant 2-methyl-branched fatty acids by blooms of the globally significant marine cyanobacteria Trichodesmium erythraeum. ACS Omega, 6(35), (2021): 22803–22810, https://doi.org/10.1021/acsomega.1c03196.
    Description: The bloom-forming cyanobacteria Trichodesmium contribute up to 30% to the total fixed nitrogen in the global oceans and thereby drive substantial productivity. On an expedition in the Gulf of Mexico, we observed and sampled surface slicks, some of which included dense blooms of Trichodesmium erythraeum. These bloom samples contained abundant and atypical free fatty acids, identified here as 2-methyldecanoic acid and 2-methyldodecanoic acid. The high abundance and unusual branching pattern of these compounds suggest that they may play a specific role in this globally important organism.
    Description: This work was funded with grants from the National Science Foundation grants OCE-1333148, OCE-1333162, and OCE-1756254 and the Woods Hole Oceanographic Institution (IR&D). GCxGC analysis made possible by WHOI’s Investment in Science Fund.
    Keywords: Lipids ; Alkyls ; Bacteria ; Genetics ; Chromatography
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  • 5
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Drake, H. F., Rivest, R. L., Edelman, A., & Deutch, J. A simple model for assessing climate control trade-offs and responding to unanticipated climate outcomes. Environmental Research Letters, 16(10), (2021): 104012, https://doi.org/10.1088/1748-9326/ac243e.
    Description: Persistent greenhouse gas (GHG) emissions threaten global climate goals and have prompted consideration of climate controls supplementary to emissions mitigation. We present MARGO, an idealized model of optimally-controlled climate change, which is complementary to both simpler conceptual models and more complicated Integrated Assessment Models. The four methods of controlling climate damage—mitigation, carbon dioxide removal (CDR), adaptation, and solar radiation modification (SRM)—are not interchangeable, as they enter at different stages of the causal chain that connects GHG emissions to climate damages. Early and aggressive mitigation is necessary to stabilize GHG concentrations below a tolerable level. While the most cost-beneficial and cost-effective pathways to reducing climate suffering include deployments of all four controls, the quantitative trade-offs between the different controls are sensitive to value-driven parameters and poorly-known future costs and damages. Static policy optimization assumes perfect foresight and obscures the active role decision-makers have in shaping a climate trajectory. We propose an explicit policy response process wherein climate control policies are re-adjusted over time in response to unanticipated outcomes. We illustrate this process in two 'storyline' scenarios: (a) near-term increases in mitigation and CDR are deficient, such that climate goals are expected to slip out of reach; (b) SRM is abruptly terminated after 40 years of successful deployment, causing an extremely rapid warming which is amplified by an excess of GHGs due to deterred mitigation. In both cases, an optimized policy response yields substantial benefits relative to continuing the original policy. The MARGO model is intentionally designed to be as simple, transparent, customizable, and accessible as possible, addressing concerns about previous climate-economic modelling approaches and enabling a more diverse set of stakeholders to engage with these essential and timely topics.
    Description: This material is based upon work supported by the National Science Foundation Graduate Research Fellowship Program under Grant No. 174530.
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  • 6
    Publication Date: 2022-05-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Min, E., Wilcots, M. E., Naeem, S., Gough, L., McLaren, J. R., Rowe, R. J., Rastetter, E. B., Boelman, N. T., & Griffin, K. L. Herbivore absence can shift dry heath tundra from carbon source to sink during peak growing season. Environmental Research Letters, 16(2), (2021): 024027, https://doi.org/10.1088/1748-9326/abd3d0.
    Description: In arctic tundra, large and small mammalian herbivores have substantial impacts on the vegetation community and consequently can affect the magnitude of carbon cycling. However, herbivores are often absent from modern carbon cycle models, partly because relatively few field studies focus on herbivore impacts on carbon cycling. Our objectives were to quantify the impact of 21 years of large herbivore and large and small herbivore exclusion on carbon cycling during peak growing season in a dry heath tundra community. When herbivores were excluded, we observed a significantly greater leaf area index as well as greater vascular plant abundance. While we did not observe significant differences in deciduous dwarf shrub abundance across treatments, evergreen dwarf shrub abundance was greater where large and small herbivores were excluded. Both foliose and fruticose lichen abundance were higher in the large herbivore, but not the small and large herbivore exclosures. Net ecosystem exchange (NEE) likewise indicated the highest carbon uptake in the exclosure treatments and lowest uptake in the control (CT), suggesting that herbivory decreased the capacity of dry heath tundra to take up carbon. Moreover, our calculated NEE for average light and temperature conditions for July 2017, when our measurements were taken, indicated that the tundra was a carbon source in CT, but was a carbon sink in both exclosure treatments, indicating removal of grazing pressure can change the carbon balance of dry heath tundra. Collectively, these findings suggest that herbivore absence can lead to changes in plant community structure of dry heath tundra that in turn can increase its capacity to take up carbon.
    Description: The authors would like to thank Jess Steketee, Austin Roy, Matthew Suchocki, Ruby An, Cody Lane and the Arctic LTER (NSF Grant No. 1637459) for maintaining the long-term herbivore exclosure experiment. This work was supported by funding from the NSF (Grant Nos. OPP-1603677 to J R M, OPP-1603760 to L G, OPP-1603654 to R J R, OPP-1603560 to E R, OPP-1603777 to N B and K L G). We also acknowledge financial support for Megan Wilcots from the Department of Ecology, Evolution, and Environmental Biology at Columbia University.
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  • 7
    Publication Date: 2022-01-07
    Description: Iron is an indispensable metabolic cofactor in both pro- and eukaryotes, which engenders a natural competition for the metal between bacterial pathogens and their human or animal hosts. Bacteria secrete siderophores that extract Fe3+ from tissues, fluids, cells, and proteins; the ligand gated porins of the Gram-negative bacterial outer membrane actively acquire the resulting ferric siderophores, as well as other iron-containing molecules like heme. Conversely, eukaryotic hosts combat bacterial iron scavenging by sequestering Fe3+ in binding proteins and ferritin. The variety of iron uptake systems in Gram-negative bacterial pathogens illustrates a range of chemical and biochemical mechanisms that facilitate microbial pathogenesis. This document attempts to summarize and understand these processes, to guide discovery of immunological or chemical interventions that may thwart infectious disease.
    Type: Article , PeerReviewed
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