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  • Articles  (9)
  • American Institute of Physics (AIP)  (5)
  • Blackwell Science Ltd  (4)
  • 2020-2023
  • 2000-2004  (9)
  • 1
    Electronic Resource
    Electronic Resource
    [S.l.] : American Institute of Physics (AIP)
    Physics of Fluids 12 (2000), S. 589-596 
    ISSN: 1089-7666
    Source: AIP Digital Archive
    Topics: Physics
    Notes: Numerical simulations of an impulsively started jet were performed in order to investigate the effects of trailing jet instability on axisymmetric vortex ring formation. The predictions were compared to experimental results reported in the literature and to recently published numerical results. The total and vortex ring circulations were found to be in good agreement with both the experimental and the numerical results. The presence of a universal formation time scale was confirmed. The results also highlighted an important interaction between an instability which develops in the trailing jet for large discharge times and the dynamics of the head vortex ring. This interaction accelerates the process by which the vortex ring detaches from the trailing jet and has a significant effect on the vortex ring circulation. © 2000 American Institute of Physics.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    Journal of Mathematical Physics 43 (2002), S. 2670-2689 
    ISSN: 1089-7658
    Source: AIP Digital Archive
    Topics: Mathematics , Physics
    Notes: A comprehensive study of the symmetric Lévy stable probability density function is presented. This is performed for orders both less than 2, and greater than 2. The latter class of functions are traditionally neglected because of a failure to satisfy non-negativity. The complete asymptotic expansions of the symmetric Lévy stable densities of order greater than 2 are constructed, and shown to exhibit intricate series of transcendentally small terms—asymptotics beyond all orders. It is demonstrated that the symmetric Lévy stable densities of any arbitrary rational order can be written in terms of generalized hypergeometric functions, and a number of new special cases are given representations in terms of special functions. A link is shown between the symmetric Lévy stable density of order 4, and Pearcey's integral, which is used widely in problems of optical diffraction and wave propagation. This suggests the existence of applications for the symmetric Lévy stable densities of order greater than 2, despite their failure to define a probability density function. © 2002 American Institute of Physics.
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  • 3
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    Journal of Mathematical Physics 42 (2001), S. 1860-1868 
    ISSN: 1089-7658
    Source: AIP Digital Archive
    Topics: Mathematics , Physics
    Notes: The complete asymptotic expansions, that is to say expansions which include any exponentially small terms lying beyond all orders of the asymptotic power series, are calculated for the Fermi–Dirac integrals. We present two methods to accomplish this, the first in the complex plane utilizing Mellin transforms and Hankel's representation of the gamma function, and the second on the real line using the known asymptotic expansions of the confluent hypergeometric functions. The complete expansions of Fp(η) are then used to investigate the effect that these traditionally neglected exponentially small terms have on physical systems. It is shown that for a 2 dimensional nonrelativistic ideal Fermi gas, the subdominant exponentially small series becomes dominant. © 2001 American Institute of Physics.
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  • 4
    Electronic Resource
    Electronic Resource
    [S.l.] : American Institute of Physics (AIP)
    Physics of Fluids 13 (2001), S. 2671-2681 
    ISSN: 1089-7666
    Source: AIP Digital Archive
    Topics: Physics
    Notes: The sound radiated by an axisymmetric (two-dimensional) premixed reacting free jet was studied using direct numerical simulation. The jet was injected into cold combustion products. A narrow (in radial extent) high temperature pulse was specified at the jet inlet to stabilize the reacting jet. The computational domain included both the near-field flow and far-field acoustic regions. Both reacting and nonreacting cases were considered. The heat release associated with the reacting jet had a significant effect on the vortical structure, as well as the sound radiation level and pattern, within the jet. The sound radiation pattern and the source terms in Lighthill's equation were used to identify apparent sound source locations. Within the context of the assumptions of the present simulations, the results showed that the effect of heat release was to: (1) Stabilize the jet, (2) enhance sound radiation levels due to an increase in the entropy source, and (3) shift the frequency of the most unstable mode to lower values, resulting in a broader sound spectrum. © 2001 American Institute of Physics.
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  • 5
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 116 (2002), S. 460-470 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Temperature and coverage dependent studies of p-aminobenzoic acid on a Cu(110) single crystal surface show a novel sequence of periodic structures linked to successive removal of hydrogen from the adsorbed species, as shown by LEED, STM, HREELS, and TPD. At room temperature, flat-lying molecules with a primitive unit cell of (3×4) periodicity with glide plane along the 〈001〉 direction are observed. Annealing this surface to 464 K causes partial desorption of H2 and a variation of the intensity in HREELS of various bands and formation of a (5 −22 4) periodicity. STM images suggest the formation of dimers, as a result of the dehydrogenation. On annealing to higher temperatures (510 K), further dehydrogenation forms (6 −51 2) structure. Finally, at 540 K, a (4 −31 2) periodicity is revealed in which all species correspond to dehydrogenated dimers. Through this sequence, all species retain a flat-lying orientation on the surface. © 2002 American Institute of Physics.
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  • 6
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: Enteropathogenic Escherichia coli (EPEC), like many bacterial pathogens, use a type III secretion system to deliver effector proteins across the bacterial cell wall. In EPEC, four proteins, EspA, EspB, EspD and Tir are known to be exported by a type III secretion system and to be essential for ‘attaching and effacing’ (A/E) lesion formation, the hallmark of EPEC pathogenicity. EspA was recently shown to be a structural protein and a major component of a large, transiently expressed, filamentous surface organelle which forms a direct link between the bacterium and the host cell. In contrast, EspB is translocated into the host cell where it is localized to both membrane and cytosolic cell fractions. EspA and EspB are required for translocation of Tir to the host cell membrane suggesting that they may both be components of the translocation apparatus. In this study, we show that EspB co-immunoprecipitates with the EspA filaments and that, during EPEC infection of HEp-2 cells, EspB localizes closely with EspA. Using a number of binding assays, we also show that EspB can bind and be copurified with EspA. Nevertheless, binding of EspA filaments to the host cell membranes occurred even in the absence of EspB. These results suggest that following initial attachment of the EspA filaments to the target cells, EspB is delivered into the host cell membrane and that the interaction between EspA and EspB may be important for protein translocation.
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  • 7
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: Enteropathogenic Escherichia coli (EPEC), an important cause of infantile diarrhoea in the developing world, disrupts host cell microvilli, causes actin rearrangements and attaches intimately to the host cell surface. This characteristic phenotype, referred to as the attaching and effacing (A/E) effect, is encoded on a 36 kb pathogenicity island called the locus of enterocyte effacement (LEE). The LEE includes genes involved in type III secretion and translocation, the eae gene encoding an outer membrane adhesin known as intimin, the tir gene for the translocated intimin receptor, a regulator and various genes of unknown function. Among this last group is sepL. To determine the role of SepL in EPEC pathogenesis, we constructed and tested a non-polar sepL mutant. We found that this sepL mutant is deficient for A/E and that it secretes markedly reduced quantities of those proteins involved in translocation (EspA, EspB and EspD), but normal levels of those proteins presumed to be effectors (Tir, EspF and EspG). Despite normal levels of secretion, the mutant strain was unable to translocate EspF and Tir into host cells and formed no EspA filaments. Fractionation studies revealed that SepL is a soluble cytoplasmic protein. Yeast two-hybrid and affinity purification studies indicated that SepL interacts with the LEE-encoded protein SepD. In contrast to SepL, we found that SepD is required for type III secretion of both translocation and effector proteins. Together, these results demonstrate that SepL has a unique role in type III secretion as a functional component of the translocation system that interacts with an essential element of the secretion machinery.
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  • 8
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Ltd
    Molecular microbiology 49 (2003), S. 0 
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: The type III secretion system (TTSS) is a modular apparatus assembled by many pathogenic Gram-negative bacteria and is designed to translocate proteins through the bacterial cell wall into the eukaryotic host cell. The conserved components of the TTSS comprise stacks of rings spanning the inner and outer bacterial membrane and a narrow, needle-like structure projecting outwards. The TTSS of enteropathogenic E. coli is unique in that one of the translocator proteins, EspA, polymerizes to form an extension to the needle complex which interacts with the host cell. In this study we present the 3D structure of EspA filaments to c. 26 Å resolution determined from electron micrographs of negatively stained preparations by image processing. The structure comprises a helical tube with a diameter of 120 Å enclosing a central channel of 25 Å diameter through which effector proteins may be transported. The subunit arrangement corresponds to a one-start helix with 28 subunits present in five turns of the helix and an axial rise of 4.6 Å per subunit. This is the first report of a 3D structure of a filamentous extension to the TTSS.
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  • 9
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: Map is an enteropathogenic Escherichia coli (EPEC) protein that is translocated into eukaryotic cells by a type III secretion system. Although not required for the induction of attaching and effacing (A/E) lesion formation characteristic of EPEC infection, translocated Map is suggested to disrupt mitochondrial membrane potential, which may impact upon subsequent functions of the organelle such as control of cell death. Before secretion, many effector proteins are maintained in the bacterial cytosol by association with a specific chaperone. In EPEC, chaperones have been identified for the effector proteins translocated intimin receptor (Tir) and EspF, and for the translocator proteins EspB and EspD. In this study, we present evidence that the Tir-specific chaperone, CesT, also performs a chaperone function for Map. Using a combination of biochemical approaches, we demonstrate specific interaction between CesT and Map. Similar to other chaperone–effector pairings, binding is apparent at the amino-terminus of Map and is indicated to proceed by a similar mechanism to CesT:Tir interaction. Map secretion from a cesT mutant strain (SE884) is shown to be reduced and, importantly, its translocation from this strain after infection of HEp-2 cells is almost totally abrogated. Although other chaperones are reported to have a bivalent binding specificity, CesT is the first member of its family that chaperones more than one protein for translocation.
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