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  • Persian sturgeon  (12)
  • 2020-2022  (12)
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  • 1
    Publication Date: 2021-07-06
    Description: The objective of this study was to analyse the population genetic structure of the Persian sturgeon (Acipenser persicus) in Sefidrud and Gorganrud rivers watershed based on the characterization of microsatellite markers during 2006 - 2008. 100 samples of Persian sturgeon were collected from two regions. Four microsatellite loci (Ls68, Spl168, Spl173 and Afu68) were analyzed for the molecular characterization of this species which resulted in polymorphic patterns. DNA bands were analysed using Biocapt and GenAlex software package. A total of 109 alleles were observed of which the maximum number of alleles (17) were found in Spl168 locus which belonged to sturgeons from Sefidrud river's watershed and the minimum number of alleles (10) in Ls68 locus belonging to the sturgeons from Gorganrud river's watershed. Results of microsatellite analysis revealed that the differences between samples of two regions were not statistically significant (p〉0.05), neither for the average number of alleles per locus nor for observed heterozygosities. The calculated Fst and Rst between two regions was 0.07 and 0.17 showing that the genetic difference was significant (p〈 0.01). Samples from Sefidrud river's watershed in Spl173, Afu68 and Spl168 loci and samples of other regions in Afu68 and Spl168 loci were at Hardy-Weinberg equation. The genetic distance was calculated as 0.4 which represents a significant genetic difference between samples of two studied areas. In conclusion, this study suggests that the Persian sturgeons in two regions of the southern part of the Caspian Sea are genetically differentiated, therefore fisheries management of these unique stocks for restocking and conservation of gene pools is highly recommended.
    Description: Article includes abstract in Farsi on last page.
    Keywords: Biology ; Fisheries ; Persian sturgeon ; Acipenser persicus ; Caspian Sea ; Microsatellite ; Genetic structure ; Population genetic ; Iran
    Repository Name: AquaDocs
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  • 2
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    In:  http://aquaticcommons.org/id/eprint/22837 | 18721 | 2018-05-25 22:34:14 | 22837 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-10
    Description: In this study Escherichia coli DE3 containing expression vector (pET21a) with cloned Persian sturgeon growth hormone (psGH) gene was grown in 10 mL LB broth on a 150 rpm shaker, at the temperature of 37 °C. At the late log phase (determined by OD standard curve) 100 µL isopropyl β-D-1-thiogalactopyranoside (IPTG) was added for induction of GH synthesis. Samples were taken every 2 hours and after bacterial cells lysis crude extracts with recombinant proteins inclusion bodies (IB) were loaded on 15% SDS-PAGE gel. Thenafter staining, comparative concentrations of rpsGH were measured by densitometric scanning of sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel it was more than 90 %. The maximum yield of GH was observed after 4 hours of growth. To recover active psGH from inclusion bodies we used imidozole to obtain most of the total recombinant protein in the soluble fraction. Purification of 6xhisN tag recombinant psGH has been performed using affinity chromatography where nickel was bound to an agarose bead by chelation using NTA (nitrilotriacetic acid) beads. The overall yield of the purified monomeric psGH was approximately 50% of the initial IB proteins. The purification manipulations including IB isolation and solubilisation, protein refolding by dialyze and affinity chromatography ensure yields of biologically active psGH up to 30%. This study shows that, the affinity chromatography is a powerful and very specific method for recombinant proteins purification of psGH.
    Keywords: Biology ; Chemistry ; Fisheries ; Persian sturgeon ; Growth hormone ; Purification ; Affinity chromatography ; Biotechnology ; Iran
    Repository Name: AquaDocs
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  • 3
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25519 | 18721 | 2018-10-05 15:40:50 | 25519 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: The Persian sturgeon (Acipenser persicus) is more abundant sturgeon species in the South Caspian Sea and consist the highest proportion of Iranian Caviar, meat as well as bringing maximum foreign currency income, however from systematic point of view and differentiation of this species from Russian sturgeon (Acipenser gueldenstadttii) a serious challenging issues remain, where some Russian scientist are believe that the Persian sturgeon is not as an valid species and consider it as a subspecies of Russian sturgeon. This research conducted with the objective of identification and introducing a molecular marker based on specific DNA for differentiation of two species of Persian sturgeon and Russian sturgeon via a proved molecular marker method. For this purposes 8 different molecular approaches such: Microsatellite, AFLP, RAPD, sequencing of Cytb, 16sDNA, ND5, Growth Hormone gene and finally Single Nucleotide Polymorphism (SNP) were investigated. Based on applied methodology, between 5 to 16 caudal fin tissues were sampled for each species from different region of the Caspian Sea, Sefiedrud River, Ural and Volga rivers. Following DNA extraction, its quality and quantity were determined and the PCR experiment has been conducted using 5-110 primers according to various methods and type of gene. The PCR products were electrophoresed on Polyacrilamid or agarose gels and followed by silver and Ethidium Bromide staining. In RAPD method, polymorphic DNA band was cut on the gel followed by purification and then the segments were cloned in vector in Top10 strain of E.coli, and then sequenced. Meanwhile for Growth Hormone gene in Persian and Russian sturgeon the MEGA 4, Gene runner software were used to design the appropriate primers for PCR amplification. The PCR products were cloned in PTZ57R/T vector and transformed in Top10 E.coli strain and sequenced finally. For all other genes, similar methods were applied for PCR amplification and its products were sequenced and statistical analysis as well as phylogenetical tree was performed. In Single Nucleotide Polymorphism (SNP) method, after genomic library construction, in total 14.4 billion nucleotides were sequenced and similarity/ differentiation analysis of two species were investigated using specific bioinformatic software. Results indicated that Microsatellite and AFLP methods showed high level of genetic variation both within and between species. The Cytb gene, when 4 sample sequences from each species were compared two species were differentiated, however when analysis repeated over 15 samples, the sequence comparison couldn't differentiate two above mentioned species. Full sequence comparison of 16sDNA and mtDNA-ND5 gene showed variation in some nucleotide in both species of Persian and Russian sturgeon but no significant. Results of sequences obtained from cloned segment with RAPD method and also specific primer design based on produced sequences could succeed to discover a variable DNA band that able to differentiate two species from each other. Results of the present study also showed that the growth hormone gene (GH) of Persian and Russian sturgeon consists of 645 nucleotide that translate to 214 Amino Acids. The sequence comparison indicated that the gene coding growth hormone in Persian and Russian sturgeon had the highest similarity with GH of Mammals (71%), Anguilaformes (63%) and less similarity with bony fish (37%). Phylogenetic analysis indicates that Persian and Russian sturgeon in compare to other organism are ancient species and this gene is originated from a common ancestor. At present study the most appropriate results obtained from Single Nucleotide Polymorphism (SNP) method by sequencing 14.4 billion nucleotide from genome of two species of Persian and Russian sturgeon from North and the South Caspian Sea could prove that the Persian sturgeon is a valid and independent specie. This excellent results is the biggest scientific achievement for differentiation of two highly commercial important sturgeon species in the Caspian Sea in last two decades.
    Keywords: Biology ; Iran ; Caspian Sea ; 16S rDNA ; Acipenser persicus ; Persian sturgeon ; Acipenser gueldenstadttii ; DNA ; Russian sturgeon ; Species differentiation ; Molecular Marker ; SNP
    Repository Name: AquaDocs
    Type: monograph
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  • 4
    Publication Date: 2021-07-06
    Description: The goal of this study was to analyse the population genetic structure of the Persian sturgeon (Acipenser persicus) between South Caspian Sea and Sefidrud River with mtDNA control region (Dloop gene) and DNA sequencing method during 2010 – 2012 sturgeon stock assessment project. Fish speciemns were collected by bottom trawl net. Extraction of DNA, PCR and DNA sequencing were carried out. Diversity index, the gamma distribution shape parameter for the rate heterogeneity among sites and nucleotide sequence, Fst index, exact test, the historical demographic pattern using neutrality tests and mismatch distribution analysis (D test of Tajima and Fs test of Fu) were analysed. Thirteen haplotypes were obtained, average (±SD) for haplotype diversity was 0.961 ± 0.101, nucleotide diversity was 0.038 ± 0.015, the gamma distribution shape parameter was 0.19, Fst index revealed little genetic structure between populations and the significant Fst value was seen by 10000 permutation only between Sefidrud River and Other Areas (P≤ 0.05) and was confirmed by exact test of population differentiation. Mismatch distribution for Acipenser persicus appeared to be unimodal, which closely matched the expected distributions under the sudden expansion model and supported by the low Harpending’s Raggedness index (0.061). Tajima’s D and Fu’s Fs statistics were -0.84 and - 0.220, respectively, and was not significant. The results of this study showed that the population of Acipenser persicus in Sefidrud River were genetically differentiated from South Caspian Sea and three other areas represented a single panmictic populations. Therefore, fisheries managements of this valuable species should be directed towards conservation of gene pools and increasing different populations.
    Keywords: Biology ; Fisheries ; Acipenser persicus ; population ; genetic ; structure ; South Caspian Sea ; DNA sequencing ; Persian sturgeon ; Sefidrud River ; Caspian Sea ; method ; Iran ; parameter ; heterogeneity ; populations ; fisheries
    Repository Name: AquaDocs
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  • 5
    Publication Date: 2021-06-30
    Description: The effects of stocking density of eggs and larvae were studied related to the morphological deformities appearance, percentage of survival, and growth rate, in order to achieve the most suitable stocking density for eggs and larvae in incubators and rearing tanks. The egg stocking densities were 500, 700 and 900 g per incubator for great sturgeon, 500 and 1000g per incubator for Persian sturgeon and 400 and 425g per incubator for stellate sturgeon. Larvae were stocked at densities of 10000, 15000 and 20000 larvae per m3 for great sturgeon, 21660, 41004 and 69000 larvae per m3 for Persian sturgeon and 15770, 23250, 57660 and 62250 larvae per m3for stellate sturgeon. The results indicate significant differences in percentage of survived in fertilized eggs (p〈0.05). By transferring the larvae into the fibreglass tanks, growth and survival rate decreased, whereas mortality and incidence of deformities increased as stocking density increased particularly on the onset of exogenous feeding. In the present study totally 20 types of deformities including bent spine, hunched back, hanging or looped tail, fin deformation, stunted body length and etc. were registered. The results showed that the morphological deformities frequency in dead and live fish were higher in high stocking densities comparing to the low stocking densities.
    Keywords: Aquaculture ; Biology ; Great sturgeon ; Persian sturgeon ; stellate sturgeon ; Morphological deformities ; Stocking density ; Larval survival ; Iran
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  • 6
    Publication Date: 2021-07-07
    Description: In order to have a sustainable management on Persian sturgeon as a highly commercial species in the South Caspian Sea, we need to identify its population structure and the level as well as its conservation status in their natural habitat. To develop a conservation program for this all Caspian Sea' sturgeon species it requires knowledge of its genetic diversity using reliable molecular marker to study population genetic structure. For these purposes, an enriched library was prepared based on a modified biotin-capture method. Approximately 1800 positive clones were screened for microsatellites in an Acipenser persicus genomic library. Of these 350 positively hybridizing clones were sequenced, and 81 clones were identified as having microsatellites with adequate flanking regions. We developed and tested 68 microsatellite primer pairs for Persian sturgeon. Out of 68 primer pairs developed, 11 pairs resulted in poor or no amplification, 13 were ambiguous, 6 were monomorphic, 20 were tetrasomic and 18 were octosomic in Persian sturgeon. While none of the markers showed disomic inheritance in Persian sturgeon and Russian sturgeon (A. gueldenstaedtii). Several of the markers appeared useful for studies stellate sturgeon (A. stellatus), ship sturgeon (A. nudiventris) and beluga (Huso huso). Nearly all the polymorphic pattern for ship, stellate and beluga displayed the simple banding patterns characteristic of disomic loci, while those for Russian sturgeon displayed banding patterns characteristic of tetraploid or higher polyploid levels. These markers may prove useful in a variety of future sturgeon population genetic studies in the Caspian Sea.
    Keywords: Biology ; Fisheries ; Persian sturgeon ; Acipenser persicus ; Caspian Sea ; Microsatellite ; Population genetic ; Iran
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  • 7
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    In:  http://aquaticcommons.org/id/eprint/21716 | 18721 | 2017-11-28 08:37:42 | 21716 | University of Guilan, Faculty of Natural Resources, Iran
    Publication Date: 2021-06-29
    Description: In the present study, mitochondrial DNA polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) assay was used to assess the population structure and genetic relationships among six Persian sturgeon, Acipenser persicus populations from the south Caspian Sea along the Iranian coast. The complete nucleotide dehydrogenase subunit 5 (NADH 5) region of mtDNA amplified by PCR was digested with five restriction enzymes. In total, 154 individuals from six populations including: Guilan (Zone1-2), Mazandaran (Zone 3 and 5), Golestan (Zone 4) and Sefidroud River, from the south Caspian Sea along the Iranian coast were analyzed using five restriction endonucleases (Rsa І, Hinf І, HaeIII, Mbo І and Cfr13І), yielding 17 haplotypes. Samples from Sefidroud River were clearly identified by cluster and molecular variance model (AMOVA) analyses. This collection showed dominant haplotypes that were little in populations from the other geographic areas. The mean haplotype diversity (h) and nucleotide diversity (π) were 0.739±0.038 and 0.0105±0.0043, respectively. Based on heterogeneity test haplotype frequencies of Persian sturgeon populations and Monte-Carlo with 1000 replicates in PCR-RFLP method significant differences were seen (χ2 =37.12, P〈 0.0001) and these results showed that haplotype distribution in different location were significant and populations of Sefidroud River were statistically significant (P〈 0.0001). This result suggests that the unique genetic structure of Sefidroud River represents a highly valuable genetic resource and should now be treated as demographically independent and managed separately.
    Keywords: Biology ; Fisheries ; genetic ; polymorphismsc ; relationships ; Persian sturgeon ; Acipenser persicus ; Caspian Sea ; mitochondrial DNA ; Restriction ; length ; Iran ; haplotype
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  • 8
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25294 | 18721 | 2018-09-07 08:21:17 | 25294 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: The objective of the present study was to determine the possible production of Persian sturgeon (Acipenser persicus) and Beluga (Huso huso) gynogen/triploids and also to determine the most appropriate type of thermal shock and the duration of induced shock after fertilization. Persian sturgeon and Beluga spawners were collected from Guilan's sturgeon catch stations and transported to the Shahid Beheshti sturgeon hatchery for artificial breeding and restocking programs. Ovulated eggs and sperms were collected based on common procedures in hatcheries. In order to separate the seminal fluids and dilute the milts, sperms were centrifuged at 6000 rpm for 20 min. and seminal fluids stored in refrigerator for further use. Sperm motility was investigated. In order to determine the best duration for radiation, the milt was diluted (1:9) with immobilizing solution. Samples of diluted milt were placed for UV irradiation (UV lamp model UVG-54, 254 nm, made by UVP America) for 0.5, 1, 1.5, 1.45, 2, to 5 min. The motility of radiated sperms and controls were examined under the light microscope and the motility curve was drawn. For application of thermal shock two types of heat shock (32, 34 and 37°C) and cold shock (0±1°C) were used for duration of 2.5 and 60 min respectively. Both thermal shock were applied at 12, 15, 18 min after fertilization. Four experimental groups were designed including; normal eggs as control group and sperms without UV thermal shock), gynogenesis (Sperm irradiated with UV and thermal shock were applied), triploid (thermal shock without radiation by UV on sperm) and haploid group (without thermal shock but using irradiated sperm for fertilization). Verification of the success of treatments was assessed using genetic analysis on sturgeon larvae and fingerlings. In triploids the total surface area, volume of cells and nucleus as well as chromosome number were determined. To identify a gynogenetic larva, microsatellite markers were used to analysis specific loci by using primers designed for lake sturgeon. The results were analyzed using SPSS, Excell software. To determine the significant levels between various parameters and comparison between controls and various treatments, one way of Analysis of Variance (ANOVA) was used. Whenever the significant level was observed to determine its level a Duncan test were examined. Results of present study showed that the best duration for UV radiation on sperms of Beluga was 105-110 seconds. Average fertilization rate for control Beluga was 51%, while in heat shock group it was 2-5 % and in cold shock it was 44.6%. There was a significant difference in fertilization rate in cold shock group compared to heat shock group (P〈0.05), however no difference was observed between 32 and 34°C treatments. The average survival rate of larvae in control group was 51%, while in heat shock treatment (32 and 34°C) it was very low close to zero. However in cold shock treatment the results was better and hatching percentage of larvae was between 30 -35%. Triploid treatment showed better results than gynogenesis group. A minimum triploid larvae obtained from heat shock was zero but using cold shock, the maximum number of 170 specimen was harvested. There was no significant difference in the number of larvae obtained between 32 and 34° C treatments (P〈0.05). Although some difference was observed on large and small axes, surface areas and volume of red blood cells but no significant differences were observed between control and triploid groups (P 0.05). In the meantime, the chromosome number in triploid beluga was (3N=177±3) as compared to diploid 2N= 118±3, which indicated an extra set of chromosome (n=60) in triploid fish. Totally 26.6% of investigated fish was triploids. Microsatellite molecular markers clearly differentiate gynogenetic fish on the bases of allele inheritance of male and female parents, and were proven that this technique can clearly identify allelic inheritance of parents to offspring. In Persian sturgeon in compare to beluga a different results were observed. Heat shock (37°C) not present any positive results therefore has no application in induce gynogenesis on this species, also no significant difference was observed between 32 and 34°C treatment. Cold shock showed better results, especially when duration of UV radiation was adjusted to 105 seconds. Molecular analysis using microsatellite marker positively proved the gynogenetic offspring by counting the allelic inheritance. However Persian sturgeon as a tetraploid species (2N=240) has its difficulty on scoring the banding patterns. We highly recommend disomic primers application for allelic inheritance on gynogene Persian sturgeon.
    Keywords: Aquaculture ; Biology ; Iran ; Persian sturgeon ; Beluga ; Gynogenesis ; Triploids ; Chromosome manipulation ; Huso huso ; Fertilization ; Motility ; Sperm ; ANOVA ; Survival rate ; Species ; Larvae ; Blood cells
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    Type: monograph
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  • 9
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    In:  http://aquaticcommons.org/id/eprint/21756 | 18721 | 2017-11-30 04:45:47 | 21756 | University of Guilan, Faculty of Natural Resources, Iran
    Publication Date: 2021-06-30
    Description: The effect of starvation and re-feeding was investigated on growth, hematology and biochemical parameters in juvenile Persian sturgeon (Acipenser persicus). Three hundred and seventy five fish (108±0.63 g) were divided into five feeding groups. The control group (C) was fed to satiation three times a day during the experiment. The four groups were starved for 1 (W1), 2 (W2), 3 (W3), and 4 (W4) weeks respectively, and then fed to satiation during a 4 week re-feeding period. The results indicated that some parameters including final weight, specific growth rate ,body weight increase, plasma enzymes (ALT, Alanine aminotransferase, AST, Aspartat aminotransferase and ALP, Alkaline phosphatise, hematological parameters [Mean corpuscular volume (MCV), mean corpuscular hemoglobin concentration (MCHC), and mean corpuscular hemoglobin (MCH)]were significantly affected by feeding regimes. The plasma cortisol, hematocrit, lymphocytes, neutrophils, eosinophils, and monocytes were not affected by starvation and subsequent re-feeding. These findings showed that short term starvations had no significant negative effects on growth performance, most biochemical and hematological parameters in Persian sturgeon could recover when re-feeding resumed.
    Keywords: Biology ; Fisheries ; feeding ; hematology ; starvation ; plasma ; blood ; biochemical parameters ; juvenile ; Persian sturgeon ; Acipenser persicus
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  • 10
    Publication Date: 2021-07-08
    Description: The effects of starvation and subsequent re-feeding on compensatory growth performance, blood serum metabolites and IGF-I mRNA expression in liver and muscle were investigated in juvenile Persian sturgeon. Growth indices including body weight, SGR, CF, and HSI significantly decreased after starvation. However, after re-feeding sturgeons that were starved for 1 week reached the same weight as the control, indicating that complete compensatory growth had occurred. Conversely, sturgeon in longer periods of starvation showed only partial growth compensation. HSI values decreased significantly during starvation, although they returned to the control fish levels after re-feeding. Plasma levels of glucose and insulin during starvation and re-feeding did not significantly change. This suggests that sturgeon is able to maintain glycaemia during starvation, probably due to their non-carbohydrates source dietary. Plasma total lipid level in un-fed treatments, however, was found to increase, possibly as a mechanism to utilise lipids as a fuel during starvation. IGF-I mRNA expression in liver and muscle increased during starvation and decreased after re-feeding. However, changes in the IGF-I mRNA expression were not significantly different among treatments. These results indicate that a periodic short-term starvation in Persian sturgeon does not adversely sacrifice overall fish weight gain and sturgeon can realise compensatory growth.
    Keywords: Aquaculture ; Biology ; Fisheries ; Persian sturgeon ; Feeding regime ; Compensatory growth ; Blood metabolite ; IGF-I mRNA expression ; Iran ; Acipenser persicus ; gene
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