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  • Oxford University Press  (2)
  • 2020-2022  (2)
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  • 1
    Publication Date: 2020-10-24
    Description: Forensics aims at using physical evidence to solve investigations with science-based principles, thus operating within a theoretical framework. This however, is often rather weak, the exception being DNA-based human forensics that is well anchored in theory. Soil is a most commonly encountered, easily and unknowingly transferred evidence but it is seldom employed as soil analyses require extensive expertise. In contrast, comparative analyses of soil bacterial communities using nucleic acid technologies can efficiently and precisely locate the origin of forensics soil traces. However, this application is still in its infancy, and is very rarely used. We posit that understanding the theoretical bases and limitations of their uses is essential for soil microbial forensics to be judiciously implemented. Accordingly, we review the ecological theory and experimental evidence explaining differences between soil microbial communities– i.e. the generation of beta diversity and propose to integrate a bottom-up approach of interactions at the micro-scale, reflecting historical contingencies with top-down mechanisms driven by the geographic template, providing a potential explanation why bacterial communities map according to soil types. Finally, we delimit the use of soil microbial forensics based on the present technologies and ecological knowledge, and propose possible venues to remove existing bottlenecks.
    Print ISSN: 0168-6445
    Electronic ISSN: 1574-6976
    Topics: Biology
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  • 2
    Publication Date: 2021-03-19
    Description: Bdellovibrio and like organisms (BALOs) are obligate predatory bacteria commonly encountered in the environment. In dual predator-prey cultures, prey accessibility ensures optimal feeding and replication and rapid BALO population growth. However, the environmental prey landscape is complex, as it also incorporates non-prey cells and other particles. These may act as decoys, generating unproductive encounters which in turn may affect both predator and prey population dynamics. In this study, we hypothesized that increasing decoy: prey ratios would bring about increasing costs on the predator's reproductive fitness. We also tested the hypothesis that different BALOs and decoys would have different effects. To this end, we constructed prey landscapes including periplasmic or epibiotic predators including two types of decoy under a large range of initial decoy: prey ratio, and mixed cultures containing multiple predators and prey. We show that as decoy: prey ratios increase, the maximal predator population sizes is reduced and the time to reach it significantly increases. We found that BALOs spent less time handling non-prey (including superinfection-immune invaded prey) than prey cells, and did not differentiate between efficient and less efficient prey. This may explain why in multiple predator and prey cultures, less preferred prey appear to act as decoy.
    Print ISSN: 0168-6496
    Electronic ISSN: 1574-6941
    Topics: Biology
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