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  • 1
    Publication Date: 2024-04-03
    Description: Plasmids are extrachromosomal genetic elements that often encode fitness-enhancing features. However, many bacteria carry “cryptic” plasmids that do not confer clear beneficial functions. We identified one such cryptic plasmid, pBI143, which is ubiquitous across industrialized gut microbiomes and is 14 times as numerous as crAssphage, currently established as the most abundant extrachromosomal genetic element in the human gut. The majority of mutations in pBI143 accumulate in specific positions across thousands of metagenomes, indicating strong purifying selection. pBI143 is monoclonal in most individuals, likely due to the priority effect of the version first acquired, often from one's mother. pBI143 can transfer between Bacteroidales, and although it does not appear to impact bacterial host fitness in vivo, it can transiently acquire additional genetic content. We identified important practical applications of pBI143, including its use in identifying human fecal contamination and its potential as an alternative approach to track human colonic inflammatory states.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
    Format: application/pdf
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  • 2
    Publication Date: 2024-01-22
    Description: The recently selected missions to Venus have opened a new era for the exploration of this planet. These missions will provide information about the chemistry of the atmosphere, the geomorphology, local-to-regional surface composition, and the rheology of the interior. One key scientific question to be addressed by these future missions is whether Venus remains volcanically active, and if so, how its volcanism is currently evolving. Hence, it is fundamental to analyze appropriate terrestrial analog sites for the study of possibly active volcanism on Venus. To this regard, we propose Mount Etna - one of the most active and monitored volcanoes on Earth - as a suitable terrestrial laboratory for remote and in-situ investigations to be performed by future missions to Venus. Being characterized by both effusive and explosive volcanic products, Mount Etna offers the opportunity to analyze multiple eruptive styles, both monitoring active volcanism and identifying the possible occurrence of pyroclastic activity on Venus. We directly compare Mount Etna with Idunn Mons, one of the most promising potentially active volcanoes of Venus. Despite the two structures show a different topography, they also show some interesting points of comparison, and in particular: a) comparable morpho-structural setting, since both volcanoes interact with a rift zone, and b) morphologically similar volcanic fields around both Mount Etna and Idunn Mons. Given its ease of access, we also propose Mount Etna as an analog site for laboratory spectroscopic studies to identify the signatures of unaltered volcanic deposits on Venus.
    Description: Published
    Description: 115959
    Description: OSV2: Complessità dei processi vulcanici: approcci multidisciplinari e multiparametrici
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 3
    Publication Date: 2024-05-20
    Description: To ensure the long-term sustainable use of African Great Lakes (AGL), and to better understand the functioning of these ecosystems, authorities, managers and scientists need regularly collected scientific data and information of key environmental indicators over multi-years to make informed decisions. Monitoring is regularly conducted at some sites across AGL; while at others sites, it is rare or conducted irregularly in response to sporadic funding or short-term projects/studies. Managers and scientists working on the AGL thus often lack critical long-term data to evaluate and gauge ongoing changes. Hence, we propose a multi-lake approach to harmonize data collection modalities for better understanding of regional and global environmental impacts on AGL. Climate variability has had strong impacts on all AGL in the recent past. Although these lakes have specific characteristics, their limnological cycles show many similarities. Because different anthropogenic pressures take place at the different AGL, harmonized multilake monitoring will provide comparable data to address the main drivers of concern (climate versus regional anthropogenic impact). To realize harmonized long-term multi-lake monitoring, the approach will need: (1) support of a wide community of researchers and managers; (2) political goodwill towards a common goal for such monitoring; and (3) sufficient capacity (e.g., institutional, financial, human and logistic resources) for its implementation. This paper presents an assessment of the state of monitoring the AGL and possible approaches to realize a long-term, multi-lake harmonized monitoring strategy. Key parameters are proposed. The support of national and regional authorities is necessary as each AGL crosses international boundaries.
    Description: Published
    Description: 101988
    Description: JCR Journal
    Keywords: Fisheries ; Limnology ; Pollution ; Biodiversity ; Climate change ; Erosion
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 4
    Publication Date: 2024-01-29
    Description: A multiproxy record from a stalagmite collected from Torgashinskaya Cave (Southern Siberia, Russia) and growing between ca. 6 and 3.8 ka shows evidence for regional climatic changes occurring at ca. 5 ka. Interpretation of stable isotope ratios (δ18O and δ13C) and fluorescence data (intensity and wavelength of the emitted fluorescence) suggests that the interval between ca. 5 and 4.2 ka was generally warmer and drier than the interval between ca. 6 and 5 ka. The observed bipartitioning of the climate, attributable to the so-called ‘middlelate Holocene transition’, has a striking similarity to changes in K+ and Na+ concentration of Greenland ice cores (taken as indicators of the strength of the Siberian High and Icelandic Low, respectively), in the abundance of hematite-stained grains in subpolar North Atlantic sediments and, to lesser extent, in the summer Asian monsoon intensity deduced by δ18O from Chinese speleothems. In particular, the δ18O record at Torgashinskaya Cave can be interpreted as mostly driven by temperature changes. Besides several episodes of drift towards higher temperatures, it also strongly suggests the presence of short cooling events centered at 4.1+0.08/-0.07, 4.85+0.05/-0.06, 5.1+0.09/-0.09, 5.3+0.08/-0.07 and 5.8+0.12/-0.13 ka. Notably, the last three such events are in very good correspondence with spikes in the K+ and Na+ concentration of Greenland ice cores. Instead, the cooling around 4.1 ka could be the local response to the 4.2 event, a cold/dry episode identified in several records in the Northern Hemisphere. This suggests that δ18O of speleothem calcite from this area could be a useful proxy for defining the evolution of the Siberian High and its effect on the wider regional climate.
    Description: Published
    Description: 108355
    Description: OSA2: Evoluzione climatica: effetti e loro mitigazione
    Description: JCR Journal
    Keywords: Stable isotopes ; Fluorescence ; Speleothems ; Siberian high ; Holocene ; Permafrost ; Paleoclimate ; 4.2 event
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 5
    Publication Date: 2024-04-05
    Description: Risk mitigation in long-dormant volcanic provinces is a challenge due to the absence of collective memory of past disasters as well as the scarcity, and subtlety, of unrest signals that can be monitored. In this study, the impact of a potential limnic eruption is assessed at the 92-m-deep lake Pavin (French Massif Central). The lake is hosted in a maar crater formed during the last eruptive event in metropolitan France (∼7 ka) and contains dissolved CO2 in the deepest water layer, below 60 m. Carbon dioxide (CO2) emissions measured at the lake surface (0.44 km2) reach up to 10.1 tons/day during the winter. Beyond this (limited) continuous degassing of the lake, the current CO2 budget in the monimolimnion layer (at a depth of 60 m to 92 m) was estimated at 1750 tons, of which about 450 tons are available for release in case of overturn of the lake. Scenarios for CO2 dispersion in the lower atmosphere were simulated with the DISGAS and TWODEE-2 models by varying (i) meteorological conditions, (ii) the amount of CO2 released, (iii) and the mechanisms of degassing during a potential limnic eruption. The simulations allowed identification and delimitation of areas potentially impacted by hazardous CO2 levels in the air down-valley from the lake and directly around the lake. The spatio-temporal evolution of the potential CO2 cloud raises issues regarding the impacts of such a hypothetical event in the close vicinity of the lake and, given the area is populated and highly visited, needs to be considered in future risk mitigation strategies.
    Description: Published
    Description: 108024
    Description: OSV1: Verso la previsione dei fenomeni vulcanici pericolosi
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 6
    Publication Date: 2024-04-17
    Description: Over the past decades, significant efforts have been made to understand the nature, dynamics and evolution of volcanic systems. In parallel, the continuous demographic expansion and extensive urbanization of volcanic areas have increased the exposure of our society to these natural phenomena. This increases the need to improve our capacities to accurately assess projected volcanic hazards and their potential socioeconomic and environmental impact, and Antarctica and the sub-Antarctic islands are no exception. More than a hundred volcanoes have been identified in Antarctica, some of which are entirely buried beneath the ice sheet and others as submarine volcanoes. Of these, at least eight large (basal diameters 〉 c. 20-30 km) volcanoes are known to be active and pose a considerable threat to scientific and ever-increasing tourism activities being carried out in the region. Despite the scientific and socioeconomic interest, many aspects of the past volcanic activity and magmatic processes in Antarctica, and current volcanic hazards and risks, remain unknown. Moreover, many of Antarctica’s volcanoes preserve a remarkable history of the eruptive environment, from which multiple parameters of past configurations of the Antarctic ice sheet (AIS) can be deduced. Given the critical role that the AIS plays in regulating Earth’s climate, Antarctica’s volcanoes therefore can be regarded as the ground truth for current models of past climates derived from modelling and studies of marine sediments. Here, we provide a succinct overview of the evolution of volcanism and magmatism in Antarctica and the sub-Antarctic region over the past 200 million years. Then, we briefly review the current state of knowledge of the most crucial aspects regarding Antarctica’s volcanic and magmatic processes, and the contributions volcanic studies have made to our understanding of ice sheet history and evolution, geothermal heat flow, as well as present-day and future volcanic hazard and risk. A principal objective is to highlight the problems and critical limitations of the current state of knowledge and to provide suggestions for future potential directions of volcanic-driven investigations in Antarctica. Finally, we also discuss and assess the importance and scope of education and outreach activities specifically relating to Antarctic volcanism, and within the context of broader polar sciences.
    Description: Published
    Description: 107941
    Description: OSV2: Complessità dei processi vulcanici: approcci multidisciplinari e multiparametrici
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 7
    Publication Date: 2024-05-02
    Description: Between Permian to Triassic, the Earth experienced climatic and biotic crises, included the greatest mass extinction at the Permian-Triassic boundary. These climatic and biological changes are reflected in both marine and terrestrial depositional systems. Over this time span, the Gondwana supercontinent hosted numerous large basins that may preserve the paleoenvironment response to global changes in the sedimentary record. This study provides a lithostratigraphic reappraisal of the latest Paleozoic-Mesozoic alluvial Beacon Supergroup at Allan Hills (Convoy Range), which is one of the most complete sedimentary sequences in Antarctica. Fieldwork stratigraphic-lithological observation, facies analysis, and petrographic characterization of sedimentary rocks allow the identification of six depositional units. The investigations point out for a conformable relationship between depositional and lithostratigraphic units, characterized by changes in the fluvial style. The reconnaissance of a “transitional interval” showing intermediate features between the Permian Weller Coal Measures and the Triassic Feather Conglomerate strengthen the conformable nature of the sequence across the Permian-Triassic boundary in this region. The lithological features of such interval strongly resemble those observed in the coeval deeply studied Eastern Australia successions crossing the Permian-Triassic boundary as well as the end-Permian extinction. More precisely, the uppermost coal occurrence, just above a glossopterid macroflora-bearing carbonaceous mudstone within the “transitional interval”, marks the disappearance of coal-peat forming Permian vegetation which corresponds with the terrestrial end-Permian extinction, thus representing one of the few end- Permian extinction records in Antarctica.
    Description: Published
    Description: 111741
    Description: OSA2: Evoluzione climatica: effetti e loro mitigazione
    Description: JCR Journal
    Keywords: Gondwana ; Southern Victoria ; Land Stratigraphy ; Permian-Triassic boundary ; Beacon ; Supergroup ; Allan Hills
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 8
    Publication Date: 2024-05-16
    Description: The Latin American Giant Observatory (LAGO) is a ground-based observatory studying solar or high-energy astrophysics transient events. LAGO takes advantage of its distributed network of Water Cherenkov Detectors (WCDs) in Latin America as a tool to measure the secondary particle flux reaching the ground. These secondary particles are produced during the interaction between the modulated cosmic rays flux and the atmosphere. The LAGO WCDs are sensitive to secondary charged particles, high energy photons through pair creation and Compton scattering, and even neutrons thanks to, e.g., the deuteration of protons in the water volume. The pulse shape generated by these particles depends on several factors, such as the detector geometry, the water purity, the sensor response, or the reflectivity and diffusivity of the inner coating. Due to the decentralized nature of LAGO, these properties are different for each node. Additionally, the pulse shape depends on the convolution between the response of the central photomultiplier (PMT) to individual photons and the time distribution of the Cherenkov photons reaching the PMT. Typically, a WCD gives pulses with a sharp rise time ( 10 ns) and a longer decay time ( 70 ns). In this work, the WCD data used is acquired using the original LAGO data-acquisition system that digitizes pulses at a sampling rate of 40 MHz and 10 bits resolution on time windows of 400 ns. Here, we apply unsupervised machine learning techniques to find patterns in the WCDs data and subsequently create groups, through clustering, that can be used to provide particle separation. We use data acquired from an individual WCD, showing that density-based clustering algorithms are suitable for automatic particle separation producing good candidate groups. Improved separation would help LAGO to reconstruct in situ the properties of primary cosmic rays flux. These results open the possibility to deploy machine learning-based models in our distributed detection network for onboard data analysis as an operative prototype, allowing detectors to be installed at very remote sites.
    Description: Published
    Description: 168557
    Description: JCR Journal
    Keywords: 05.07. Space and Planetary sciences
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 9
    Publication Date: 2024-05-23
    Description: Geofluids from natural springs connect with the crust and/or mantle in many cases, and their geochemical anomalies could be significant for the study on faults activity and even earthquakes. Several natural springs are distributed along the Lenglongling fault zone (LLLFZ) in the northeastern margin of the Tibetan Plateau, where the Ms 6.9 Menyuan earthquake occurred on January 8th, 2022. Based on chemical and isotopic compositions (δD, δ18O, δ13C, and 3He/4He) of water and gas samples, the origin of geofluids and their potential correlation with fault activity even including earthquakes are preliminarily assessed in this paper. The δ13CCO2 values and 3He/4He ratios showed that the gas originating from the crust was associated with the metamorphism of carbonate rocks, whereas the δ18O and δD values of water samples indicated that the natural springs were predominantly infiltrated with precipitations from local mountains ranging 3.7 - 5.5 km in height. Obvious changes of Ca2+ and HCO3􀀀 concentrations in SZK spring waters in the surface rupture zones were observed in a short period (about three months) after the main shock, in contrast to those of the GSK springs far from the surface rupture zones. Such variations might be correlated with the stress increase prior to the 2022 Menyuan Ms 6.9 earthquake. The mechanical fracturing of surrounding limestone rocks during the slipping movement of LLLF could facilitate the water-rock interactions. Compared to three-month observations after the main shock, relatively higher concentrations of HCO3􀀀 and heavier δ18OH2O values of the LHG springs were also observed in the short-term period. The shallow stored formation water might be squeezed along the cracks and rose to the surface during earthquake tremors, causing a sandblasting water phenomenon.
    Description: Published
    Description: 105767
    Description: JCR Journal
    Keywords: Menyuan earthquake ; Natural spring ; Fluid geochemistry ; Lenglongling fault ; Tibetan plateau
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 10
    Publication Date: 2023-11-21
    Description: The world's forests store large amounts of carbon (C), and growing forests can reduce atmospheric CO2 by storing C in their biomass. This has provided the impetus for world-wide tree planting initiatives to offset fossil-fuel emissions. However, forests interact with their environment in complex and multifaceted ways that must be considered for a balanced assessment of the value of planting trees. First, one needs to consider the potential reversibility of C sequestration in trees through either harvesting or tree death from natural factors. If carbon storage is only temporary, future temperatures will actually be higher than without tree plantings, but cumulative warming will be reduced, contributing both positively and negatively to future climate-change impacts. Alternatively, forests could be used for bioenergy or wood products to replace fossil-fuel use which would obviate the need to consider the possible reversibility of any benefits. Forests also affect the Earth's energy balance through either absorbing or reflecting incoming solar radiation. As forests generally absorb more incoming radiation than bare ground or grasslands, this constitutes an important warming effect that substantially reduces the benefit of C storage, especially in snow-covered regions. Forests also affect other local ecosystem services, such as conserving biodiversity, modifying water and nutrient cycles, and preventing erosion that could be either beneficial or harmful depending on specific circumstances. Considering all these factors, tree plantings may be beneficial or detrimental for mitigating climate-change impacts, but the range of possibilities makes generalisations difficult. Their net benefit depends on many factors that differ between specific circumstances. One can, therefore, neither uncritically endorse tree planting everywhere, nor condemn it as counter-productive. Our aim is to provide key information to enable appropriate assessments to be made under specific circumstances. We conclude our discussion by providing a step-by-step guide for assessing the merit of tree plantings under specific circumstances.
    Type: Article , PeerReviewed
    Format: text
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