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  • Articles  (5)
  • Woods Hole Oceanographic Institution  (3)
  • Oxford University Press  (2)
  • 2020-2023  (5)
  • 2020-2020
  • 1995-1999
  • 2022  (5)
  • 1
    Publication Date: 2022-11-10
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sassenhagen, I., Erdner, D., Lougheed, B., Richlen, M., & SjÖqvist, C. Estimating genotypic richness and proportion of identical multi-locus genotypes in aquatic microalgal populations. Journal of Plankton Research, 44(4), (2022): 559-572, https://doi.org/10.1093/plankt/fbac034.
    Description: The majority of microalgal species reproduce asexually, yet population genetic studies rarely find identical multi-locus genotypes (MLG) in microalgal blooms. Instead, population genetic studies identify large genotypic diversity in most microalgal species. This paradox of frequent asexual reproduction but low number of identical genotypes hampers interpretations of microalgal genotypic diversity. We present a computer model for estimating, for the first time, the number of distinct MLGs by simulating microalgal population composition after defined exponential growth periods. The simulations highlighted the effects of initial genotypic diversity, sample size and intraspecific differences in growth rates on the probability of isolating identical genotypes. We estimated the genotypic richness for five natural microalgal species with available high-resolution population genetic data and monitoring-based growth rates, indicating 500 000 to 2 000 000 distinct genotypes for species with few observed clonal replicates (〈5%). Furthermore, our simulations indicated high variability in genotypic richness over time and among microalgal species. Genotypic richness was also strongly impacted by intraspecific variability in growth rates. The probability of finding identical MLGs and sampling a representative fraction of genotypes decreased noticeably with smaller sample sizes, challenging the detection of differences in genotypic diversity with typical isolate numbers in the field.
    Description: This work was supported by the Olle Engkvist foundation [200-0564 to I.S.]; the Swedish Research Council (Vetenskapsrådet) [2018-04992 to B.C.L.]; the Academy of Finland [321609 to C.S.]; the National Science Foundation [NSF OCE-1841811 to D.L.E. and M.L.R.]; and the National Institute of Environmental Health [NIEHS P01ES028949 to M.L.R.].
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Suca, J. J., Wiley, D. N., Silva, T. L., Robuck, A. R., Richardson, D. E., Glancy, S. G., Clancey, E., Giandonato, T., Solow, A. R., Thompson, M. A., Hong, P., Baumann, H., Kaufman, L., & Llopiz, J. K. Sensitivity of sand lance to shifting prey and hydrography indicates forthcoming change to the northeast US shelf forage fish complex. Ices Journal of Marine Science, 78(3), (2021): 1023–1037, https://doi.org/10.1093/icesjms/fsaa251.
    Description: Northern sand lance (Ammodytes dubius) and Atlantic herring (Clupea harengus) represent the dominant lipid-rich forage fish species throughout the Northeast US shelf and are critical prey for numerous top predators. However, unlike Atlantic herring, there is little research on sand lance or information about drivers of their abundance. We use intra-annual measurements of sand lance diet, growth, and condition to explain annual variability in sand lance abundance on the Northeast US Shelf. Our observations indicate that northern sand lance feed, grow, and accumulate lipids in the late winter through summer, predominantly consuming the copepod Calanus finmarchicus. Sand lance then cease feeding, utilize lipids, and begin gonad development in the fall. We show that the abundance of C. finmarchicus influences sand lance parental condition and recruitment. Atlantic herring can mute this effect through intra-guild predation. Hydrography further impacts sand lance abundance as increases in warm slope water decrease overwinter survival of reproductive adults. The predicted changes to these drivers indicate that sand lance will no longer be able to fill the role of lipid-rich forage during times of low Atlantic herring abundance—changing the Northeast US shelf forage fish complex by the end of the century.
    Description: Research was funded by the Bureau of Ocean Energy Management (IA agreement M17PG0019; DNW, LK, HB, and JKL), including a subaward via the National Marine Sanctuary Foundation (18-11-B-203). Additional support came from the National Oceanic and Atmospheric Administration Woods Hole Sea Grant Program (NA18OAR4170104, Project No. R/O-57; JKL, HB, and DNW) and a National Science Foundation Long-term Ecological Research grant for the Northeast US Shelf Ecosystem (OCE 1655686; JKL). JJS was funded by the National Science Foundation Graduate Research Fellowship programme. ARR was funded by an NOAA Nancy Foster Scholarship.
    Repository Name: Woods Hole Open Access Server
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  • 3
    Publication Date: 2022-06-14
    Description: This project investigated the distribution of low dissolved oxygen bottom waters (hypoxia) in southern Cape Cod Bay. Hypoxia was documented for the first time in late summer 2019 and 2020 despite extensive monitoring for the past decade. The data include: 1) measurements of bottom dissolved oxygen collected in 2019 by the Massachusetts Division of Marine Fisheries (MDMF) and the Center for Coastal Studies (CCS) ; 2) full water column profiles of temperature, salinity, chlorophyll fluorescence, dissolved oxygen concentration and optical backscatter collected in late summer 2020 by the Woods Hole Oceanographic Institution (WHOI); 3) monthly water quality data including CTD with dissolved oxygen and chlorophyll fluorescence and discrete bottom samples analyzed for dissolved nutrients collected by the CCS for the period 2011-2020; 4) inorganic nutrients from discrete surface and bottom samples collected monthly for the period 2006-2020; 5) bottom temperature data collected the Wreck of Mars location by the MDMF over the period 1991-2021. There are four separate data sets included: 1) MDMF and CCS bottom dissolved oxygn from 2019; 2) CTD and ancillary data collected by WHOI in 2019; 3) CCS monthly survey data from 2011-2020; and 4) bottom temperature data collected by MDMF for 1991-2021. 1) MDMF/CCS dissolved oxygen data was collected from ship-based surveys using an YSI 6920 V2-2 data sonde; 2) WHOI CTD data was collected from vertical casts made from a small research vessel using an RBR CTD; 3) CCS CTD data was collected from vertical casts made from a small research vessel using a SeaBird Electronics CTD; 4) MDMF temperature data was collected from a bottom mounted temperature logger. Related Publications: Scully, M.E., W.R. Geyer, D. Borkman, T.L. Pouch, A. Costa, and O.C. Nichols, in press. Unprecedented summer hypoxia in southern Cape Cod Bay: An ecological response to regional climate change? Biogeosciences.
    Description: National Science Foundation - OCE- 2053240 NOAA Seagrant - NA20OAR4170506
    Keywords: Hypoxia ; Harmful Algal Blooms ; Climate Change ; Thermal stratification
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 4
    Publication Date: 2022-05-26
    Description: Conceptual workflow diagram for biodiversity data products for plankton imaged in the field with an Imaging FlowCytobot (IFCB), generalizing data sources and processing steps from collection to analysis and publication. White clouds represent online resources. Pink rectangles represent different data entities. The yellow rectangle represents analyses in electronic notebooks. Black arrows are automated steps, while blue arrows are manually done. The dashed arrow between the “Level 2 File” and “External Repository” represents the option to also upload a further derived product to an external repository.
    Description: National Science Foundation (EDI DEB #1629233, CyberSEES #1539256, NES-LTER OCE #1655686)
    Keywords: phytoplankton ; plankton imaging ; IFCB ; FAIR data ; reproducibility ; workflow
    Repository Name: Woods Hole Open Access Server
    Type: Image
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  • 5
    Publication Date: 2022-12-01
    Description: The Overturning in the Subpolar North Atlantic Program (OSNAP) is an international effort started in 2014 dedicated to achieving a better understanding of the link between dense-water formation and the meridional overturning circulation in the high-latitude North Atlantic. Moorings, gliders, and subsurface acoustically-tracked RAFOS floats have been used to collect temperature, salinity, and current data across the Labrador Sea, Irminger Sea, Reykjanes Ridge, Iceland Basin, Rockall-Hatton Plateau, and Rockall Trough. The specific objective of the OSNAP float program is to gather information on the pathways of the dense overflow waters transported by the deep limb of the overturning circulation and assess the connection of those pathways with currents observed crossing the OSNAP mooring line. This data report details the observations collected by 148 floats that were deployed for OSNAP during the summers of 2014, 2015, 2016 and 2017. Deployment locations were in the Iceland Basin, Irminger Sea, and in the Charlie-Gibbs Fracture Zone. Mission lengths ranged from 540-730 days, and the floats were ballasted to passively drift at a fixed pressure of either 1800, 2000, 2200, 2500, or 2800 dbar to tag the deep overflow water masses of the subpolar North Atlantic (Iceland-Scotland and Denmark Strait Overflow Waters).
    Description: Funding was provided by the National Science Foundation under Grant No. OCE-1259618 & OCE-1756361
    Keywords: RAFOS ; Trajectory ; Subpolar North Atlantic
    Repository Name: Woods Hole Open Access Server
    Type: Technical Report
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