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  • Wiley  (240)
  • National Academy of Sciences  (75)
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  • 2015-2019  (372)
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  • 2017  (191)
  • 1
    Publication Date: 2017-06-17
    Description: Cell and gene therapy approaches are safer when they possess a system that enables the therapy to be rapidly halted. Human mesenchymal stem cells were transduced with an adenoviral vector containing the cDNA for bone morphogenetic protein 2 (AdBMP2) to induce bone formation. To make this method safer, a system to quickly kill these virally transduced cells was designed and evaluated. Cells were encapsulated inside poly(ethylene glycol) diacrylate (PEG-Da) hydrogels that are able to shield the cells from immunological destruction. The system involves an inducible caspase-9 (iCasp9) activated using a specific chemical inducer of dimerization (CID). Delivering AdBMP2-transduced human mesenchymal stem cells encapsulated in PEG-Da hydrogel promoted ectopic ossification in vivo , and the iCasp9 system allowed direct control of the timing of apoptosis of the injected cells. The iCasp9-CID system enhances the safety of delivering AdBMP2-transduced cells, making it a more compelling therapeutic for bone repair and spine fusion. This article is protected by copyright. All rights reserved
    Electronic ISSN: 0091-7419
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Published by Wiley
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  • 2
    Publication Date: 2017-07-31
    Print ISSN: 0730-2312
    Electronic ISSN: 1097-4644
    Topics: Biology , Chemistry and Pharmacology , Medicine
    Published by Wiley
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  • 3
    Publication Date: 2019
    Description: Abstract The width of the tropical Hadley circulation (HC) has garnered intense interest in recent decades, owing to the emerging evidence for its expansion in observations and models and to the anticipated impacts on surface climate in its descending branches. To better clarify the causes and impacts of tropical widening, this work generalizes the zonal mean HC to the regional level by defining meridional overturning cells (RC) using the horizontally divergent wind. The edges of the RC are more closely connected to surface hydroclimate than more traditional metrics of regional tropical width (such as the sea level pressure ridge) or even than the zonal mean HC. Simulations reveal a robust weakening of the RC in response to greenhouse gas increases, along with a widening of the RC in some regions. For example, simulated widening of the zonal mean HC in the Southern Hemisphere appears to arise in large part from regional overturning anomalies over the Eastern Pacific, where there is no clear RC. Unforced interannual variability in the position of the zonal mean HC edge is associated with a more general regional widening. These distinct regional signatures suggest that the RCs may be well suited for the attribution of observed circulation trends. The spatial pattern of regional meridional overturning trends in reanalyses corresponds more closely to the pattern associated with unforced interannual variability than to the pattern associated with CO2 forcing, suggesting a large contribution of natural variability to the recent observed tropical widening trends.
    Print ISSN: 2169-897X
    Electronic ISSN: 2169-8996
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 4
  • 5
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Testor, P., de Young, B., Rudnick, D. L., Glenn, S., Hayes, D., Lee, C. M., Pattiaratchi, C., Hill, K., Heslop, E., Turpin, V., Alenius, P., Barrera, C., Barth, J. A., Beaird, N., Becu, G., Bosse, A., Bourrin, F., Brearley, J. A., Chao, Y., Chen, S., Chiggiato, J., Coppola, L., Crout, R., Cummings, J., Curry, B., Curry, R., Davis, R., Desai, K., DiMarco, S., Edwards, C., Fielding, S., Fer, I., Frajka-Williams, E., Gildor, H., Goni, G., Gutierrez, D., Haugan, P., Hebert, D., Heiderich, J., Henson, S., Heywood, K., Hogan, P., Houpert, L., Huh, S., Inall, M. E., Ishii, M., Ito, S., Itoh, S., Jan, S., Kaiser, J., Karstensen, J., Kirkpatrick, B., Klymak, J., Kohut, J., Krahmann, G., Krug, M., McClatchie, S., Marin, F., Mauri, E., Mehra, A., Meredith, M. P., Meunier, T., Miles, T., Morell, J. M., Mortier, L., Nicholson, S., O'Callaghan, J., O'Conchubhair, D., Oke, P., Pallas-Sanz, E., Palmer, M., Park, J., Perivoliotis, L., Poulain, P., Perry, R., Queste, B., Rainville, L., Rehm, E., Roughan, M., Rome, N., Ross, T., Ruiz, S., Saba, G., Schaeffer, A., Schonau, M., Schroeder, K., Shimizu, Y., Sloyan, B. M., Smeed, D., Snowden, D., Song, Y., Swart, S., Tenreiro, M., Thompson, A., Tintore, J., Todd, R. E., Toro, C., Venables, H., Wagawa, T., Waterman, S., Watlington, R. A., & Wilson, D. OceanGliders: A component of the integrated GOOS. Frontiers in Marine Science, 6, (2019): 422, doi:10.3389/fmars.2019.00422.
    Description: The OceanGliders program started in 2016 to support active coordination and enhancement of global glider activity. OceanGliders contributes to the international efforts of the Global Ocean Observation System (GOOS) for Climate, Ocean Health, and Operational Services. It brings together marine scientists and engineers operating gliders around the world: (1) to observe the long-term physical, biogeochemical, and biological ocean processes and phenomena that are relevant for societal applications; and, (2) to contribute to the GOOS through real-time and delayed mode data dissemination. The OceanGliders program is distributed across national and regional observing systems and significantly contributes to integrated, multi-scale and multi-platform sampling strategies. OceanGliders shares best practices, requirements, and scientific knowledge needed for glider operations, data collection and analysis. It also monitors global glider activity and supports the dissemination of glider data through regional and global databases, in real-time and delayed modes, facilitating data access to the wider community. OceanGliders currently supports national, regional and global initiatives to maintain and expand the capabilities and application of gliders to meet key global challenges such as improved measurement of ocean boundary currents, water transformation and storm forecast.
    Description: The editorial team would like to recognize the support of the global glider community to this paper. Our requests for data and information were met with enthusiasm and welcome contributions from around the globe, clearly demonstrating to us a point made in this paper that there are many active and dedicated teams of glider operators and users. We should also acknowledge the support that OceanGliders has received from the WMO/IOC JCOMM-OCG and JCOMMOPS that have allowed this program to develop, encouraging us to articulate a vision for the role of gliders in the GOOS. We acknowledge support from the EU Horizon 2020 AtlantOS project funded under grant agreement No. 633211 and gratefully acknowledge the many agencies and programs that have supported underwater gliders: AlterEco, ANR, CFI, CIGOM, CLASS Ellet Array, CNES, CNRS/INSU, CONACyT, CSIRO, DEFRA, DFG/SFB-754, DFO, DGA, DSTL, ERC, FCO, FP7, and H2020 Europen Commission, HIMIOFoTS, Ifremer, IMOS, IMS, IOOS, IPEV, IRD, Israel MOST, JSPS, MEOPAR, NASA, NAVOCEANO (Navy), NERC, NFR, NJDEP, NOAA, NRC, NRL, NSF, NSERC, ONR, OSNAP, Taiwan MOST, SANAP-NRF, SENER, SIMS, Shell Exploration and Production Company, Sorbonne Université, SSB, UKRI, UNSW, Vettleson, Wallenberg Academy Fellowship, and WWF.
    Keywords: In situ ocean observing systems ; Gliders ; Boundary currents ; Storms ; Water transformation ; Ocean data management ; Autonomous oceanic platforms ; GOOS
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Todd, R. E., Chavez, F. P., Clayton, S., Cravatte, S., Goes, M., Greco, M., Ling, X., Sprintall, J., Zilberman, N., V., Archer, M., Aristegui, J., Balmaseda, M., Bane, J. M., Baringer, M. O., Barth, J. A., Beal, L. M., Brandt, P., Calil, P. H. R., Campos, E., Centurioni, L. R., Chidichimo, M. P., Cirano, M., Cronin, M. F., Curchitser, E. N., Davis, R. E., Dengler, M., deYoung, B., Dong, S., Escribano, R., Fassbender, A. J., Fawcett, S. E., Feng, M., Goni, G. J., Gray, A. R., Gutierrez, D., Hebert, D., Hummels, R., Ito, S., Krug, M., Lacan, F., Laurindo, L., Lazar, A., Lee, C. M., Lengaigne, M., Levine, N. M., Middleton, J., Montes, I., Muglia, M., Nagai, T., Palevsky, H., I., Palter, J. B., Phillips, H. E., Piola, A., Plueddemann, A. J., Qiu, B., Rodrigues, R. R., Roughan, M., Rudnick, D. L., Rykaczewski, R. R., Saraceno, M., Seim, H., Sen Gupta, A., Shannon, L., Sloyan, B. M., Sutton, A. J., Thompson, L., van der Plas, A. K., Volkov, D., Wilkin, J., Zhang, D., & Zhang, L. Global perspectives on observing ocean boundary current systems. Frontiers in Marine Science, 6, (2010); 423, doi: 10.3389/fmars.2019.00423.
    Description: Ocean boundary current systems are key components of the climate system, are home to highly productive ecosystems, and have numerous societal impacts. Establishment of a global network of boundary current observing systems is a critical part of ongoing development of the Global Ocean Observing System. The characteristics of boundary current systems are reviewed, focusing on scientific and societal motivations for sustained observing. Techniques currently used to observe boundary current systems are reviewed, followed by a census of the current state of boundary current observing systems globally. The next steps in the development of boundary current observing systems are considered, leading to several specific recommendations.
    Description: RT was supported by The Andrew W. Mellon Foundation Endowed Fund for Innovative Research at WHOI. FC was supported by the David and Lucile Packard Foundation. MGo was funded by NSF and NOAA/AOML. XL was funded by China’s National Key Research and Development Projects (2016YFA0601803), the National Natural Science Foundation of China (41490641, 41521091, and U1606402), and the Qingdao National Laboratory for Marine Science and Technology (2017ASKJ01). JS was supported by NOAA’s Global Ocean Monitoring and Observing Program (Award NA15OAR4320071). DZ was partially funded by the Joint Institute for the Study of the Atmosphere and Ocean (JISAO) under NOAA Cooperative Agreement NA15OAR4320063. BS was supported by IMOS and CSIRO’s Decadal Climate Forecasting Project. We gratefully acknowledge the wide range of funding sources from many nations that have enabled the observations and analyses reviewed here.
    Keywords: Western boundary current systems ; Eastern boundary current systems ; Ocean observing systems ; Time series ; Autonomous underwater gliders ; Drifters ; Remote sensing ; Moorings
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Reid, E. C., DeCarlo, T. M., Cohen, A. L., Wong, G. T. F., Lentz, S. J., Safaie, A., Hall, A., & Davis, K. A. Internal waves influence the thermal and nutrient environment on a shallow coral reef. Limnology and Oceanography, 64(5), (2019): 1949-1965, doi:10.1002/lno.11162.
    Description: Internal waves can influence water properties in coastal ecosystems through the shoreward transport and mixing of subthermocline water into the nearshore region. In June 2014, a field experiment was conducted at Dongsha Atoll in the northern South China Sea to study the impact of internal waves on a coral reef. Instrumentation included a distributed temperature sensing system, which resolved spatially and temporally continuous temperature measurements over a 4‐km cross‐reef section from the lagoon to 50‐m depth on the fore reef. Our observations show that during summer, internal waves shoaling on the shallow atoll regularly transport cold, nutrient‐rich water shoreward, altering near‐surface water properties on the fore reef. This water is transported shoreward of the reef crest by tides, breaking surface waves and wind‐driven flow, where it significantly alters the water temperature and nutrient concentrations on the reef flat. We find that without internal wave forcing on the fore reef, temperatures on the reef flat could be up to 2.0°C ± 0.2°C warmer. Additionally, we estimate a change in degree heating weeks of 0.7°C‐weeks warmer without internal waves, which significantly increases the probability of a more severe bleaching event occurring at Dongsha Atoll. Furthermore, using nutrient samples collected on the fore reef during the study, we estimated that instantaneous onshore nitrate flux is about four‐fold higher with internal waves than without internal waves. This work highlights the importance of internal waves as a physical mechanism shaping the nearshore environment, and likely supporting resilience of the reef.
    Description: We are grateful for the support of the Dongsha Atoll Research Station and the Dongsha Atoll Marine National Park, whose efforts made this research possible. The authors would also like to thank G. Lohmann from Woods Hole Oceanographic Institution and L. Hou, F. Shiah, and K. Lee from Academia Sinica for providing logistical and field support. We thank S. Tyler, and J. Selker from the Center for Transformative Environmental Monitoring Programs, funded by the National Science Foundation (EAR awards 1440596 and 1440506), for timely and effective provision of experimental design support, logistical support, and equipment for the project. We thank R. Branch, University of Washington, and X. Pan, Ocean University of China, for their guidance and SST data that informed this study. Support to G. T. F. Wong is from the Ministry of Science and Technology, Taiwan, grant NSC98‐2611‐M‐001‐004‐MY3 and NSC100‐2611‐M‐001‐001 and from the Academia Sinica through grants titled “Atmospheric Forcing on Ocean Biogeochemistry (AFOBi)” and “Dongsha Ocean Acidification Study (DOcS)”. Support for S. Lentz is from National Science Foundation grant OCE‐1558343. Support for A. Cohen from NSF Grant No. 1220529, by the Academia Sinica (Taiwan) through a thematic project grant to G. Wong and A. Cohen. Support for E. Reid, A. Safaie, and K. A. Davis is from National Science Foundation grant OCE‐1753317, and support to E. Reid from the Environmental Engineering Henry Samueli Endowed Fellowship and the UCI Oceans Graduate Fellowship.
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2019-11-11
    Description: Receptor-activity–modifying proteins (RAMPs) are single transmembrane-spanning proteins which serve as molecular chaperones and allosteric modulators of G-protein–coupled receptors (GPCRs) and their signaling pathways. Although RAMPs have been previously studied in the context of their effects on Family B GPCRs, the coevolution of RAMPs with many GPCR families suggests an expanded repertoire of potential interactions. Using bioluminescence resonance energy transfer-based and cell-surface expression approaches, we comprehensively screen for RAMP interactions within the chemokine receptor family and identify robust interactions between RAMPs and nearly all chemokine receptors. Most notably, we identify robust RAMP interaction with atypical chemokine receptors (ACKRs), which function to establish chemotactic gradients for directed cell migration. Specifically, RAMP3 association with atypical chemokine receptor 3 (ACKR3) diminishes adrenomedullin (AM) ligand availability without changing G-protein coupling. Instead, RAMP3 is required for the rapid recycling of ACKR3 to the plasma membrane through Rab4-positive vesicles following either AM or SDF-1/CXCL12 binding, thereby enabling formation of dynamic spatiotemporal chemotactic gradients. Consequently, genetic deletion of either ACKR3 or RAMP3 in mice abolishes directed cell migration of retinal angiogenesis. Thus, RAMP association with chemokine receptor family members represents a molecular interaction to control receptor signaling and trafficking properties.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 9
    Publication Date: 2017-12-19
    Description: Phenotypic plasticity is an evolvable property of biological systems that can arise from environment-specific regulation of gene expression. To better understand the evolutionary and molecular mechanisms that give rise to plasticity in gene expression, we quantified the effects of 235 single-nucleotide mutations in theSaccharomyces cerevisiae TDH3promoter (PTDH3) on the activity of this promoter in media containing glucose, galactose, or glycerol as a carbon source. We found that the distributions of mutational effects differed among environments because many mutations altered the plastic response exhibited by the wild-type allele. Comparing the effects of these mutations with the effects of 30PTDH3polymorphisms on expression plasticity in the same environments provided evidence of natural selection acting to prevent the plastic response inPTDH3activity between glucose and galactose from becoming larger. The largest changes in expression plasticity were observed between fermentable (glucose or galactose) and nonfermentable (glycerol) carbon sources and were caused by mutations located in the RAP1 and GCR1 transcription factor binding sites. Mutations altered expression plasticity most frequently between the two fermentable environments, with mutations causing significant changes in plasticity between glucose and galactose distributed throughout the promoter, suggesting they might affect chromatin structure. Taken together, these results provide insight into the molecular mechanisms underlying gene-by-environment interactions affecting gene expression as well as the evolutionary dynamics affecting natural variation in plasticity of gene expression.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 10
    Publication Date: 2017-05-30
    Description: Listeria monocytogenes is a common food-borne pathogen that can disseminate from the intestine and infect multiple organs. Here, we used sequence tag-based analysis of microbial populations (STAMP) to investigate L. monocytogenes population dynamics during infection. We created a genetically barcoded library of murinized L. monocytogenes and then used deep sequencing to track the pathogen’s dissemination routes and quantify its founding population (Nb) sizes in different organs. We found that the pathogen disseminates from the gastrointestinal tract to distal sites through multiple independent routes and that Nb sizes vary greatly among tissues, indicative of diverse host barriers to infection. Unexpectedly, comparative analyses of sequence tags revealed that fecally excreted organisms are largely derived from the very small number of L. monocytogenes cells that colonize the gallbladder. Immune depletion studies suggest that distinct innate immune cells restrict the pathogen’s capacity to establish replicative niches in the spleen and liver. Finally, studies in germ-free mice suggest that the microbiota plays a critical role in the development of the splenic, but not the hepatic, barriers that prevent L. monocytogenes from seeding these organs. Collectively, these observations illustrate the potency of the STAMP approach to decipher the impact of host factors on population dynamics of pathogens during infection.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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