ALBERT

Description: Background: Avocado (Persea americana) is an economically important tropical fruit considered to be a good source of fatty acids. Despite its importance, the molecular and cellular characterization of biochemical and developmental processes in avocado is limited due to the lack of transcriptome and genomic information. Results: The transcriptomes of seeds, roots, stems, leaves, aerial buds and flowers were determined using different sequencing platforms. Additionally, the transcriptomes of three different stages of fruit ripening (pre-climacteric, climacteric and post-climacteric) were also analyzed. The analysis of the RNAseqatlas presented here reveals strong differences in gene expression patterns between different organs, especially between root and flower, but also reveals similarities among the gene expression patterns in other organs, such as stem, leaves and aerial buds (vegetative organs) or seed and fruit (storage organs). Important regulators, functional categories, and differentially expressed genes involved in avocado fruit ripening were identified. Additionally, to demonstrate the utility of the avocado gene expression atlas, we investigated the expression patterns of genes implicated in fatty acid metabolism and fruit ripening. Conclusions: A description of transcriptomic changes occurring during fruit ripening was obtained in Mexican avocado, contributing to a dynamic view of the expression patterns of genes involved in fatty acid biosynthesis and the fruit ripening process.

Description: Chronic joint pain is associated to an increase in the consumption of medication and decrease in life quality in elderly people, which requires developing non-pharmacological treatments. The aim of this study was to evaluate the effectivity of a group intervention, based on animal-assisted therapy and applied to elderly people with chronic joint pain and polymedication, regarding the decrease of chronic pain, use of analgesics and improvement of life quality. A randomized controlled trial, two arms and open-label was conducted in a Primary Health Center. Twelve weekly sessions of kinesitherapy; in the EG, these exercises were performed with the additional assistance of the therapy dog. A total of 52 participants (22 Control Group (CG), 30 EG), average age 77.50 (±7.3), women 90.4%. A significant reduction on post-intervention values of pain β = −0.67(−1.27, −0.08), p = 0.03 and pain induced insomnia β = −0.53(−1.01, −0.05), p = 0.03 was found in EG for increasing baseline values. Animal-assisted therapy leads to an additional reduction in the perception of pain and pain induced insomnia in individuals with higher baseline severity. The presence of the dog improves the attachment to intervention and the satisfaction of the participants.

Description: Severity of drought in California (U.S.) varies from year-to-year and is highly influenced by precipitation in winter months, causing billion-dollar events in single drought years. Improved understanding of the variability of drought on decadal and longer timescales is essential to support regional water resources planning and management. This paper presents a soft-computing approach to forecast the Palmer Drought Severity Index (PDSI) in California. A time-series of yearly data covering more than two centuries (1801–2014) was used for the design of ensemble projections to understand and quantify the uncertainty associated with interannual-to-interdecadal predictability. With a predictable structure elaborated by exponential smoothing, the projections indicate for the horizon 2015–2054 a weak increase of drought, followed by almost the same pace as in previous decades, presenting remarkable wavelike variations with durations of more than one year. Results were compared with a linear transfer function model approach where Pacific Decadal Oscillation and El Niño Southern Oscillation indices were both used as input time series. The forecasted pattern shows that variations attributed to such internal climate modes may not provide more reliable predictions than the one provided by purely internal variability of drought persistence cycles, as present in the PDSI time series.

Description: Recent advances in semantic web and deep learning technologies enable new means for the computational analysis of vast amounts of information from the field of digital humanities. We discuss how some of the techniques can be used to identify historical and cultural symmetries between different characters, locations, events or venues, and how these can be harnessed to develop new strategies to promote intercultural and cross-border aspects that support the teaching and learning of history and heritage. The strategies have been put to the test in the context of the European project CrossCult, revealing enormous potential to encourage curiosity to discover new information and increase retention of learned information.

Description: This article contains the results and analysis of the dynamic behavior of a poppet valve through CFD simulation. A computational model based on the finite volume method was developed to characterize the flow at the interior of the valve while it is moving. The model was validated using published data from the valve manufacturer. This data was in accordance with the experimental model. The model was used to predict the behavior of the device as it is operated at high frequencies. Non-dimensional parameters for generalizing and analyzing the effects of the properties of the fluid were used. It was found that it is possible to enhance the dynamic behavior of the valve by altering the viscosity of the working fluid. Finally, using the generated model, the influence of the angle of the poppet was analyzed. It was found that angle has a minimal effect on pressure. However, flow forces increase as angle decreases. Therefore, reducing poppet angle is undesirable because it increases power requirements for valve actuation.

Description: Models that incorporate known species-mixing effects on tree growth are essential tools to properly design silvicultural guidelines for mixed-species stands. Here, we developed generalized height–diameter (h-d) and basal area growth models for mixed stands of two main forest species in Spain: Scots pine (Pinus sylvestris L.) and Maritime pine (Pinus pinaster Ait.). Mixed-effects models were fitted from plot measurement and tree rings data from 726 Scots pine and 693 Maritime pine trees from mixed and pure stands in the Northern Iberian Range in Spain, with the primary objective of representing interactions between the species where they are interspersed in mixtures of varying proportions. An independent dataset was used to test the performance of the h-d models against models previously fitted for monospecific stands of both species. Basal area increment models were evaluated using a 10-fold block cross-validation procedure. We found that species mixing had contrasting effects on the species in both models. In h-d models, the species-mixing proportion determined the effect of species interactions. Basal area growth models showed that interspecific competition was influential only for Maritime pine; however, these effects differed depending on the mode of competition. For Scots pine, tree growth was not restricted by interspecies competition. The combination of mixed-effect models and the inclusion of parameters expressing species-mixing enhanced estimates of tree height and basal area growth compared with the available models previously developed for pure stands. Although the species-mixing effects were successfully represented in the fitted models, additional model components for accurately simulating the stand dynamics of mixtures with Scots pine and Maritime pine and other species mixtures require similar model refinements. Upon the completion of analyses required for these model refinements, the degree of improvement in simulating growth in species mixtures, including the effects of different management options, can be evaluated.

Description: During creep, magnesium alloys undergo microstructural changes due to temperature and stress. These alterations are associated with the evolution of the present phases at a microstructural level, creating different strain rates during primary and tertiary creep, and with the stability of the inter-metallic phase Mg17Al12 formed at these temperatures. In this paper, the results of creep testing of high-pressure die-cast AZ91 magnesium alloys are reported. During creep, continuous and discontinuous precipitates grow, which influences creep resistance. The creep mechanism that acts at these intermediate temperatures up to 150 °C is termed dislocation climbing. Finally, the influence of the type of precipitates on the creep behavior of alloys is determined by promoting the formation of continuous precipitates by a short heat treatment prior to creep testing.

Description: Background: Understanding the mechanisms by which hundreds of diverse cell types develop from a single mammalian zygote has been a central challenge of developmental biology. Conrad H. Waddington, in his metaphoric “epigenetic landscape” visualized the early embryogenesis as a hierarchy of lineage bifurcations. In each bifurcation, a single progenitor cell type produces two different cell lineages. The tristable dynamical systems are used to model the lineage bifurcations. It is also shown that a genetic circuit consisting of two auto-activating transcription factors (TFs) with cross inhibitions can form a tristable dynamical system. Results: We used gene expression profiles of pre-implantation mouse embryos at the single cell resolution to visualize the Waddington landscape of the early embryogenesis. For each lineage bifurcation we identified two clusters of TFs – rather than two single TFs as previously proposed – that had opposite expression patterns between the pair of bifurcated cell types. The regulatory circuitry among each pair of TF clusters resembled a genetic circuit of a pair of single TFs; it consisted of positive feedbacks among the TFs of the same cluster, and negative interactions among the members of the opposite clusters. Our analyses indicated that the tristable dynamical system of the two-cluster regulatory circuitry is more robust than the genetic circuit of two single TFs. Conclusions: We propose that a modular hierarchy of regulatory circuits, each consisting of two mutually inhibiting and auto-activating TF clusters, can form hierarchical lineage bifurcations with improved safeguarding of critical early embryogenesis against biological perturbations. Furthermore, our computationally fast framework for modeling and visualizing the epigenetic landscape can be used to obtain insights from experimental data of development at the single cell resolution.

Description: Background: Poly(A)-binding proteins (PABPs) are evolutionarily conserved proteins that have important functions in the regulation of translation and the control of mRNA stability in eukaryotes. Most PABPs encode a C-terminal domain known as the MLLE domain (previously PABC or CTC), which can mediate protein interactions. In earlier work we identified and predicted that four classes of MLLE-interacting proteins were present in Arabidopsis thaliana, which we named CID A, B, C, and D. These proteins encode transcription-activating domains (CID A), the Lsm and LsmAD domains of ataxin-2 (CID B), the CUE and small MutS-related domains (CID C), and two RNA recognition domains (CID D). We recently found that a novel class that lacks the LsmAD domain is present in CID B proteins. Results: We extended our analysis to other classes of CIDs present in the viridiplantae. We found that novel variants also evolved in classes CID A and CID C. A specific transcription factor domain is present in a distinct lineage in class A, and a variant that lacks at least two distinct domains was also identified in a divergent lineage in class C. We did not detect any variants in Class D CIDs. This class often consists of four to six highly conserved RNA-binding proteins, which suggests that major redundancy is present in this class. Conclusions: CIDs are likely to operate as components of posttranscriptional regulatory assemblies. The evident diversification of CIDs may be neutral or may be important for plant adaptation to the environment and for acquisition of specific traits during evolution. The fact that CIDs subclasses are maintained in early lineages suggest that a presumed interference between duplicates was resolved, and a defined function for each subclass was achieved.