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  • Humans  (16)
  • 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas  (2)
  • Models, Molecular
  • Polymer and Materials Science
  • 2010-2014  (19)
  • 2012  (19)
  • 1
    Publication Date: 2020-02-24
    Description: There are myriad reasons why we wish to understand the behavior of sulfur in magmatic systems, reasons that vary from pure intellectual curiosity to possible impacts on society and its resources. Since ancient times sulfur has been associated with volcanic activity, and the role of sulfur in the formation of ore deposits has long been recognized because of the necessity of metal ores for our modern life-style (e.g., Barnes 1979; Naldrett 1989; Simon and Ripley 2011, this volume). Recently the mechanisms and quantities of sulfur freed from natural magmas have become an important environmental issue due to their potential effects on global climate change. For example, the average annual volcanic SO2 emission rate of 7.5 to 10.5 teragrams (Tg) per year (Halmer et al. 2002) may contribute 10% of the global atmospheric sulfur input (Halmer et al. 2002; Smith et al. 2004), and individual eruptive episodes can rapidly contribute gigantic sulfur loads to the atmosphere, 100’s to 1000’s of Tg, depending on the scale of the eruption (Self 2006). Such sulfur emissions can produce potentially catastrophic local and global changes (e.g., Fedele et al. 2003; Ward 2009); Courtillot and Rennes (2003) correlated the timing of flood basalts with extinction events in Earth’s history and hypothesized a causal relation. Part of the kill mechanism responsible for extinction may be volcanically derived sulfur creating anoxic oceans and another part of the mechanism may be climatic changes brought about by sulfur injection into the atmosphere (Ward 2009). Indeed, Erwin (2006) advocates that sulfur released from the eruption of the Siberian Flood basalts played a role in the end-Permian extinction.
    Description: Published
    Description: 167-213
    Description: JCR Journal
    Description: open
    Keywords: magma ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
    Publication Date: 2017-04-04
    Description: Ambrym is one of the most actively erupting basaltic volcanoes in the Vanuatu island arc. Scoria clasts collected from a fallout deposit in the inner terrace of its Benbow active crater were analyzed through series of synchrotron X-ray computed microtomographic experiments, as well as permeability measurements and simulations. Our goal was to reconstruct and visualize scoria textures in 3D and to quantify vesicularity, permeability, vesicle sizes and distributions in order to understand how gas moves in and out of Ambrym basaltic magma. We find that vesicle size distributions in the volume range between ~ 103 and 1010 μm3 define two scoria classes. Vesicle size distributions in the low-to-moderately (0.44–0.67) vesicular samples can be fit by power laws with an exponent of 1 ± 0.2; distributions in the highly vesicular (0.86–0.88) samples can be fit by power laws with a higher exponent (1.4 to 1.7), as well as by exponential fits. Highly vesicular samples exhibit a very pronounced large vesicle, consisting of networks of smaller, interconnected vesicles, that is more than three orders of magnitude larger in volume than all other vesicles in each distribution. This type of vesicle is not found in the low-to-moderately vesicular samples. In addition, vesicle number density negatively correlates with vesicularity: less vesicular samples have the highest number density and vice versa, and contain far more numerous small-to-medium-sized vesicles than highly vesicular samples. Measured and calculated viscous (Darcian) permeabilities overlap in the range 10− 13 and 10− 9 m2, with higher values in the more vesicular samples. We ascribe these differences in the textural and physical properties of the scoria clasts to their derivation from distinct magma portions in the conduit that were driven by convective overturn and underwent different vesiculation histories and gas transport dynamics. Comparing basaltic scoria clasts from Ambrym to those from mild explosive activity at Stromboli volcano (Italy) reveals that differences in their vesicle size distributions may result from the influence of different crystal contents and shapes on the vesiculation and permeability of the respective magmas. Finally, we highlight how rheological properties have a fundamental role in determining the degassing behaviour of basaltic magma at Ambrym and other volcanoes in general.
    Description: Published
    Description: 55-64
    Description: 2.3. TTC - Laboratori di chimica e fisica delle rocce
    Description: JCR Journal
    Description: restricted
    Keywords: Ambrym ; Basaltic scoria ; 3D X-ray micro-tomography analysis ; Volcanic degassing ; Magma convection ; Crystal effect ; 04. Solid Earth::04.08. Volcanology::04.08.01. Gases ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.05. Volcanic rocks
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 3
    Publication Date: 2012-10-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2012 Oct 11;490(7419):157. doi: 10.1038/490157a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23060166" target="_blank"〉PubMed〈/a〉
    Keywords: Genetic Diseases, Inborn/genetics ; Genetic Privacy ; *Genome, Human ; Humans ; Sequence Analysis/economics/ethics/*instrumentation/standards
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
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    Nature Publishing Group (NPG)
    Publication Date: 2012-08-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2012 Aug 30;488(7413):568. doi: 10.1038/488568a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22932355" target="_blank"〉PubMed〈/a〉
    Keywords: Circumcision, Male/economics/ethnology/*statistics & numerical data ; Cultural Characteristics ; Humans ; Internationality ; Male ; Physicians ; Sexually Transmitted Diseases/*epidemiology/*prevention & control ; United States/epidemiology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
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    Nature Publishing Group (NPG)
    Publication Date: 2012-08-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2012 Aug 23;488(7412):443. doi: 10.1038/488443a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22914147" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; California ; Crops, Agricultural/economics/genetics/metabolism ; Food Labeling/economics/*legislation & jurisprudence ; *Food, Genetically Modified/economics ; Herbicides ; Humans ; Pest Control, Biological/economics/legislation & jurisprudence ; Public Opinion
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 6
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    Nature Publishing Group (NPG)
    Publication Date: 2012-07-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2012 Jul 18;487(7407):282-3. doi: 10.1038/487282a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22810669" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Databases, Genetic/trends ; Gene Expression Profiling ; *Genetic Research/economics ; Humans ; Research/economics/*trends
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 7
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    Nature Publishing Group (NPG)
    Publication Date: 2012-07-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2012 Jul 23;487(7408):417. doi: 10.1038/487417a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22836978" target="_blank"〉PubMed〈/a〉
    Keywords: Aged, 80 and over ; *Awards and Prizes ; California ; Foundations/economics ; Genome, Human/*genetics ; Genomics/*economics/instrumentation/*methods/trends ; Humans ; Hydrogen-Ion Concentration ; Longevity/genetics ; Semiconductors ; Time Factors
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2012-07-18
    Description: Protein stability, assembly, localization and regulation often depend on the formation of disulphide crosslinks between cysteine side chains. Enzymes known as sulphydryl oxidases catalyse de novo disulphide formation and initiate intra- and intermolecular dithiol/disulphide relays to deliver the disulphides to substrate proteins. Quiescin sulphydryl oxidase (QSOX) is a unique, multi-domain disulphide catalyst that is localized primarily to the Golgi apparatus and secreted fluids and has attracted attention owing to its overproduction in tumours. In addition to its physiological importance, QSOX is a mechanistically intriguing enzyme, encompassing functions typically carried out by a series of proteins in other disulphide-formation pathways. How disulphides are relayed through the multiple redox-active sites of QSOX and whether there is a functional benefit to concatenating these sites on a single polypeptide are open questions. Here we present the first crystal structure of an intact QSOX enzyme, derived from a trypanosome parasite. Notably, sequential sites in the disulphide relay were found more than 40 A apart in this structure, too far for direct disulphide transfer. To resolve this puzzle, we trapped and crystallized an intermediate in the disulphide hand-off, which showed a 165 degrees domain rotation relative to the original structure, bringing the two active sites within disulphide-bonding distance. The comparable structure of a mammalian QSOX enzyme, also presented here, shows further biochemical features that facilitate disulphide transfer in metazoan orthologues. Finally, we quantified the contribution of concatenation to QSOX activity, providing general lessons for the understanding of multi-domain enzymes and the design of new catalytic relays.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521037/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521037/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Alon, Assaf -- Grossman, Iris -- Gat, Yair -- Kodali, Vamsi K -- DiMaio, Frank -- Mehlman, Tevie -- Haran, Gilad -- Baker, David -- Thorpe, Colin -- Fass, Deborah -- GM26643/GM/NIGMS NIH HHS/ -- P41 RR001081/RR/NCRR NIH HHS/ -- R01 GM026643/GM/NIGMS NIH HHS/ -- England -- Nature. 2012 Aug 16;488(7411):414-8. doi: 10.1038/nature11267.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Structural Biology, Weizmann Institute of Science, Rehovot 76100, Israel.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22801504" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; Animals ; Biocatalysis ; Catalytic Domain ; Crystallography, X-Ray ; Disulfides/*metabolism ; Humans ; Mice ; Models, Molecular ; Oxidation-Reduction ; Oxidoreductases/*chemistry/*metabolism ; Protein Conformation ; Rotation ; Trypanosoma brucei brucei/*enzymology
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    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 9
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    Nature Publishing Group (NPG)
    Publication Date: 2012-12-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2012 Dec 20;492(7429):321. doi: 10.1038/492321a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23257857" target="_blank"〉PubMed〈/a〉
    Keywords: Biotechnology/*economics/organization & administration ; California ; Drug Industry/*economics/organization & administration ; Genetics, Medical/*economics/organization & administration ; Genetics, Population ; Genomics/*economics/organization & administration ; Humans ; Iceland
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 10
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    Nature Publishing Group (NPG)
    Publication Date: 2012-11-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2012 Nov 8;491(7423):171. doi: 10.1038/491171a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23135443" target="_blank"〉PubMed〈/a〉
    Keywords: *Access to Information ; *Databases, Genetic/utilization ; Genetic Testing/*methods/standards ; Genetics, Medical/*methods/standards ; Humans ; National Institutes of Health (U.S.) ; Sample Size ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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