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  • *Phylogeny  (2)
  • *Electric Conductivity  (1)
  • Nature Publishing Group (NPG)  (3)
  • Blackwell Publishing Ltd
  • Nature Publishing Group
  • Oxford University Press
  • 2010-2014  (3)
  • 1945-1949
  • 2012  (1)
  • 2011  (2)
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  • Nature Publishing Group (NPG)  (3)
  • Blackwell Publishing Ltd
  • Nature Publishing Group
  • Oxford University Press
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  • 2010-2014  (3)
  • 1945-1949
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  • 1
    Publication Date: 2011-09-06
    Description: Evolutionary relationships among the eight major lineages of Mollusca have remained unresolved despite their diversity and importance. Previous investigations of molluscan phylogeny, based primarily on nuclear ribosomal gene sequences or morphological data, have been unsuccessful at elucidating these relationships. Recently, phylogenomic studies using dozens to hundreds of genes have greatly improved our understanding of deep animal relationships. However, limited genomic resources spanning molluscan diversity has prevented use of a phylogenomic approach. Here we use transcriptome and genome data from all major lineages (except Monoplacophora) and recover a well-supported topology for Mollusca. Our results strongly support the Aculifera hypothesis placing Polyplacophora (chitons) in a clade with a monophyletic Aplacophora (worm-like molluscs). Additionally, within Conchifera, a sister-taxon relationship between Gastropoda and Bivalvia is supported. This grouping has received little consideration and contains most (〉95%) molluscan species. Thus we propose the node-based name Pleistomollusca. In light of these results, we examined the evolution of morphological characters and found support for advanced cephalization and shells as possibly having multiple origins within Mollusca.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4024475/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4024475/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kocot, Kevin M -- Cannon, Johanna T -- Todt, Christiane -- Citarella, Mathew R -- Kohn, Andrea B -- Meyer, Achim -- Santos, Scott R -- Schander, Christoffer -- Moroz, Leonid L -- Lieb, Bernhard -- Halanych, Kenneth M -- 1R01GM097502/GM/NIGMS NIH HHS/ -- 1R01NS06076/NS/NINDS NIH HHS/ -- R01 GM097502/GM/NIGMS NIH HHS/ -- R01 NS039103/NS/NINDS NIH HHS/ -- R21 DA030118/DA/NIDA NIH HHS/ -- R21 RR025699/RR/NCRR NIH HHS/ -- R21DA030118/DA/NIDA NIH HHS/ -- England -- Nature. 2011 Sep 4;477(7365):452-6. doi: 10.1038/nature10382.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, Auburn University, 101 Rouse Life Sciences, Auburn, Alabama 36849, USA. kmkocot@auburn.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21892190" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bivalvia/anatomy & histology/classification/genetics ; Expressed Sequence Tags ; Gastropoda/anatomy & histology/classification/genetics ; Gene Expression Profiling ; Genes ; Genome/*genetics ; Genomics ; Models, Biological ; Mollusca/anatomy & histology/*classification/*genetics ; *Phylogeny
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2011-03-04
    Description: Annelida, the ringed worms, is a highly diverse animal phylum that includes more than 15,000 described species and constitutes the dominant benthic macrofauna from the intertidal zone down to the deep sea. A robust annelid phylogeny would shape our understanding of animal body-plan evolution and shed light on the bilaterian ground pattern. Traditionally, Annelida has been split into two major groups: Clitellata (earthworms and leeches) and polychaetes (bristle worms), but recent evidence suggests that other taxa that were once considered to be separate phyla (Sipuncula, Echiura and Siboglinidae (also known as Pogonophora)) should be included in Annelida. However, the deep-level evolutionary relationships of Annelida are still poorly understood, and a robust reconstruction of annelid evolutionary history is needed. Here we show that phylogenomic analyses of 34 annelid taxa, using 47,953 amino acid positions, recovered a well-supported phylogeny with strong support for major splits. Our results recover chaetopterids, myzostomids and sipunculids in the basal part of the tree, although the position of Myzostomida remains uncertain owing to its long branch. The remaining taxa are split into two clades: Errantia (which includes the model annelid Platynereis), and Sedentaria (which includes Clitellata). Ancestral character trait reconstructions indicate that these clades show adaptation to either an errant or a sedentary lifestyle, with alteration of accompanying morphological traits such as peristaltic movement, parapodia and sensory perception. Finally, life history characters in Annelida seem to be phylogenetically informative.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Struck, Torsten H -- Paul, Christiane -- Hill, Natascha -- Hartmann, Stefanie -- Hosel, Christoph -- Kube, Michael -- Lieb, Bernhard -- Meyer, Achim -- Tiedemann, Ralph -- Purschke, Gunter -- Bleidorn, Christoph -- England -- Nature. 2011 Mar 3;471(7336):95-8. doi: 10.1038/nature09864.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Osnabruck, FB05 Biology/Chemistry, AG Zoology, Barbarastrasse 11, 49069 Osnabruck, Germany. struck@biologie.uni-osnabrueck.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21368831" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Annelida/anatomy & histology/chemistry/*classification ; Expressed Sequence Tags ; Genome/genetics ; Genomics ; Models, Biological ; *Phylogeny
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2012-10-30
    Description: Oxygen consumption in marine sediments is often coupled to the oxidation of sulphide generated by degradation of organic matter in deeper, oxygen-free layers. Geochemical observations have shown that this coupling can be mediated by electric currents carried by unidentified electron transporters across centimetre-wide zones. Here we present evidence that the native conductors are long, filamentous bacteria. They abounded in sediment zones with electric currents and along their length they contained strings with distinct properties in accordance with a function as electron transporters. Living, electrical cables add a new dimension to the understanding of interactions in nature and may find use in technology development.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pfeffer, Christian -- Larsen, Steffen -- Song, Jie -- Dong, Mingdong -- Besenbacher, Flemming -- Meyer, Rikke Louise -- Kjeldsen, Kasper Urup -- Schreiber, Lars -- Gorby, Yuri A -- El-Naggar, Mohamed Y -- Leung, Kar Man -- Schramm, Andreas -- Risgaard-Petersen, Nils -- Nielsen, Lars Peter -- England -- Nature. 2012 Nov 8;491(7423):218-21. doi: 10.1038/nature11586. Epub 2012 Oct 24.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Geomicrobiology, Department of Bioscience, Aarhus University, 8000 Aarhus C, Denmark.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23103872" target="_blank"〉PubMed〈/a〉
    Keywords: Aquatic Organisms/cytology/metabolism/ultrastructure ; Deltaproteobacteria/cytology/*metabolism/ultrastructure ; Denmark ; *Electric Conductivity ; Electron Transport ; Geologic Sediments/microbiology ; Glass ; Microspheres ; Molecular Sequence Data ; Molecular Typing ; Oceans and Seas ; Oxygen/metabolism ; Porosity ; RNA, Ribosomal, 16S/analysis/genetics ; Sulfides/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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