ALBERT

Description: The biomisation method is used to reconstruct Latin American vegetation at 6000±500 and 18 000±1000 radiocarbon years before present (14C yr BP) from pollen data. Tests using modern pollen data from 381 samples derived from 287 locations broadly reproduce potential natural vegetation. The strong temperature gradient associated with the Andes is recorded by a transition from high altitude cool grass/shrubland and cool mixed forest to mid-altitude cool temperate rain forest, to tropical dry, seasonal and rain forest at low altitudes. Reconstructed biomes from a number of sites do not match the potential vegetation due to local factors such as human impact, methodological artefacts and mechanisms of pollen representivity of the parent vegetation. At 6000±500 14C yr BP 255 samples are analysed from 127 sites. Differences between the modern and the 6000±500 14C yr BP reconstruction are comparatively small. Patterns of change relative to the modern reconstruction are mainly to biomes characteristic of drier climate in the north of the region with a slight more mesic shift in the south. Cool temperate rain forest remains dominant in western South America. In northwestern South America a number of sites record transitions from tropical seasonal forest to tropical dry forest and tropical rain forest to tropical seasonal forest. Sites in Central America also show a change in biome assignment to more mesic vegetation, indicative of greater plant available moisture, e.g. on the Yucatán peninsula sites record warm evergreen forest, replacing tropical dry forest and warm mixed forest presently recorded. At 18 000±1000 14C yr BP 61 samples from 34 sites record vegetation that reflects a generally cool and dry environment. Cool grass/shrubland prevalent in southeast Brazil, Amazonian sites record tropical dry forest, warm temperate rain forest and tropical seasonal forest. Southernmost South America is dominated by cool grass/shrubland, a single site retains cool temperate rain forest indicating that forest was present at some locations at the LGM. Some sites in Central México and lowland Colombia remain unchanged in their biome assignments, although the affinities that these sites have to different biomes do change between 18 000±1000 14C yr BP and present. The "unresponsive" nature of these sites results from their location and the impact of local edaphic influence.

Description: This paper presents extensive {bias determination} analyses of ozone observations from the Atmospheric Chemistry Experiment (ACE) satellite instruments: the ACE Fourier Transform Spectrometer (ACE-FTS) and the Measurement of Aerosol Extinction in the Stratosphere and Troposphere Retrieved by Occultation (ACE-MAESTRO) instrument. Here we compare the latest ozone data products from ACE-FTS and ACE-MAESTRO with coincident observations from nearly 20 satellite-borne, airborne, balloon-borne and ground-based instruments, by analysing volume mixing ratio profiles and partial column densities. The ACE-FTS version 2.2 Ozone Update product reports more ozone than most correlative measurements from the upper troposphere to the lower mesosphere. At altitude levels from 16 to 44 km, the average values of the mean relative differences are nearly all within +1 to +8%. At higher altitudes (45–60 km), the ACE-FTS ozone amounts are significantly larger than those of the comparison instruments, with mean relative differences of up to +40% (about +20% on average). For the ACE-MAESTRO version 1.2 ozone data product, mean relative differences are within ±10% (average values within ±6%) between 18 and 40 km for both the sunrise and sunset measurements. At higher altitudes (~35–55 km), systematic biases of opposite sign are found between the ACE-MAESTRO sunrise and sunset observations. While ozone amounts derived from the ACE-MAESTRO sunrise occultation data are often smaller than the coincident observations (with mean relative differences down to −10%), the sunset occultation profiles for ACE-MAESTRO show results that are qualitatively similar to ACE-FTS, indicating a large positive bias (mean relative differences within +10 to +30%) in the 45–55 km altitude range. In contrast, there is no significant systematic difference in bias found for the ACE-FTS sunrise and sunset measurements.

Description: We provide here an overview of, and a summary of results arising from, an extensive experimental campaign (the Spread F Experiment, or SpreadFEx) performed from September to November 2005, with primary measurements in Brazil. The motivation was to define the potential role of neutral atmosphere dynamics, specifically gravity wave motions propagating upward from the lower atmosphere, in seeding Rayleigh-Taylor instability (RTI) and plasma bubbles extending to higher altitudes. Campaign measurements focused on the Brazilian sector and included ground-based optical, radar, digisonde, and GPS measurements at a number of fixed and temporary sites. Related data on convection and plasma bubble structures were also collected by GOES 12, and the GUVI instrument aboard the TIMED satellite. Initial results of our SpreadFEx analyses are described separately by Fritts et al. (2009). Further analyses of these data provide additional evidence of 1) gravity wave (GW) activity near the mesopause apparently linked to deep convection predominantly to the west of our measurement sites, 2) small-scale GWs largely confined to lower altitudes, 3) larger-scale GWs apparently penetrating to much higher altitudes, 4) substantial GW amplitudes implied by digisonde electron densities, and 5) apparent influences of these perturbations in the lower F-region on the formation of equatorial spread F, RTI, and plasma bubbles extending to much higher altitudes. Other efforts with SpreadFEx data have also yielded 6) the occurrence, locations, and scales of deep convection, 7) the spatial and temporal evolutions of plasma bubbles, 8) 2-D (height-resolved) structures in electron density fluctuations and equatorial spread F at lower altitudes and plasma bubbles above, and 9) the occurrence of substantial tidal perturbations to the large-scale wind and temperature fields extending to bottomside F-layer and higher altitudes. Collectively, our various SpreadFEx analyses suggest direct links between deep tropical convection and large GW perturbations at large spatial scales at the bottomside F-layer and their likely contributions to the excitation of RTI and plasma bubbles extending to much higher altitudes.

Description: Methyl chloride (CH3Cl) is a chlorine-containing trace gas in the atmosphere contributing significantly to stratospheric ozone depletion. Large uncertainties in estimates of its source and sink magnitudes and temporal and spatial variations currently exist. GEIA inventories and other bottom-up emission estimates are used to construct a priori maps of the surface fluxes of CH3Cl. The Model of Atmospheric Transport and Chemistry (MATCH), driven by NCEP interannually varying meteorological data, is then used to simulate CH3Cl mole fractions and quantify the time series of sensitivities of the mole fractions at each measurement site to the surface fluxes of various regional and global sources and sinks. We then implement the Kalman filter (with the unit pulse response method) to estimate the surface fluxes on regional/global scales with monthly resolution from January 2000 to December 2004. High frequency observations from the AGAGE, SOGE, NIES, and NOAA/ESRL HATS in situ networks and low frequency observations from the NOAA/ESRL HATS flask network are used to constrain the source and sink magnitudes. The inversion results indicate global total emissions around 4100±470 Gg yr−1 with very large emissions of 2200±390 Gg yr−1 from tropical plants, which turn out to be the largest single source in the CH3Cl budget. Relative to their a priori annual estimates, the inversion increases global annual fungal and tropical emissions, and reduces the global oceanic source. The inversion implies greater seasonal and interannual oscillations of the natural sources and sink of CH3Cl compared to the a priori. The inversion also reflects the strong effects of the 2002/2003 globally widespread heat waves and droughts on global emissions from tropical plants, biomass burning and salt marshes, and on the soil sink.

Description: The MARSCHALS (Millimetre-wave Airborne Receiver for Spectroscopic CHaracterisation of Atmospheric Limb-Sounding) project has the general objectives of demonstrating the measurement capabilities of a limb viewing instrument working in the millimetre and sub-millimetre spectral regions (from 294 to 349 GHz) for the study of the Upper Troposphere – Lower Stratosphere (UTLS). MARSCHALS has flown on board the M-55 stratospheric aircraft (Geophysica) in two measurements campaigns. Here we report the results of the analysis of MARSCHALS measurements during the SCOUT-O3 campaign held in Darwin (Australia) in December 2005 obtained with MARC (Millimetre-wave Atmospheric-Retrieval Code). MARSCHALS measured vertical distributions of temperature, water vapour, ozone and nitric acid in the altitude range from 10 to 20 km in presence of clouds that obscure measurements in the middle infrared spectroscopic region. The minimum altitude at which the retrieval has been possible is determined by the high water concentration typical of the tropical region rather than the extensive cloud coverage experienced during the flight. Water has been measured from 10 km to flight altitude (~18 km) with a 10% accuracy, ozone from 14 km to flight altitude with accuracy ranging from 10% to 60%, while the retrieval of nitric acid has been possible with an accuracy not better than 40% only from 16 km to flight altitude due to the low signal to noise ratio of its emission in the analysed spectral region. The results have been validated using measurement made in a less cloudy region by MIPAS-STR, an infrared limb-viewing instrument on board the M-55, during the same flight.

Description: Electrostatic Solitary Waves (ESWs) have been observed by several spacecraft in the current layers of Earth's magnetosphere since 1982. ESWs are manifested as isolated pulses (one wave period) in the high time resolution waveform data obtained on these spacecraft. They are thus nonlinear structures generated out of nonlinear instabilities and processes. We report the first observations of ESWs associated with the onset of a super-substorm that occurred on 24 August 2005 while the Cluster spacecraft were located in the magnetotail at around 18–19 RE and moving northward from the plasma sheet to the lobes. These ESWs were detected in the waveform data of the WBD plasma wave receiver on three of the Cluster spacecraft. The majority of the ESWs were detected about 5 min after the super-substorm onset during which time 1) the PEACE electron instrument detected significant field-aligned electron fluxes from a few 100 eV to 3.5 keV, 2) the EDI instrument detected bursts of field-aligned electron currents, 3) the FGM instrument detected substantial magnetic fluctuations and the presence of Alfvén waves, 4) the STAFF experiment detected broadband electric and magnetic waves, ion cyclotron waves and whistler mode waves, and 5) CIS detected nearly comparable densities of H+ and O+ ions and a large tailward H+ velocity. We compare the characteristics of the ESWs observed during this event to those created in the laboratory at the University of California-Los Angeles Plasma Device (LAPD) with an electron beam. We find that the time durations of both space and LAPD ESWs are only slightly larger than the respective local electron plasma periods, indicating that electron, and not ion, dynamics are responsible for generation of the ESWs. We have discussed possible mechanisms for generating the ESWs in space, including the beam and kinetic Buneman type instabilities and the acoustic instabilities. Future studies will examine these mechanisms in more detail using the space measurements as inputs to models, and better relate the ESW space measurements to the laboratory through PIC code models.

Description: The Sulfur Transport and dEposition Model (STEM) developed at the University of Iowa is applied to the analysis of observations obtained during the Intercontinental Chemical Transport Experiment-Phase B (INTEX-B), conducted over the Pacific Ocean during the 2006 North American spring season. This paper reports on the model performance of meteorological parameters, trace gases, aerosols and photolysis rate (J-values) predictions with the NASA DC-8 and NSF/NCAR C-130 airborne measurements along with observations from three surface sites Mt. Bachelor, Trinidad Head and Kathmandu, Nepal. In general the model shows appreciable skill in predicting many of the important aspects of the observed distributions. The major meteorological parameters driving long range transport are accurately predicted by the WRF simulations used in this study. Furthermore, the STEM model predicts aerosols and trace gases concentrations within a standard deviation of most of the observed mean values. The results also point towards areas where model improvements are needed; e.g., the STEM model underestimates CO (15% for the DC8 and 6% for the C-130), whereas it overpredicts PAN (by a factor of two for both aircraft). The errors in the model calculations are attributed to uncertainty in emissions estimates and uncertainty in the top and lateral boundary conditions. Results from a series of sensitivity simulations examining the impact of the growth of emissions in Asia from 2000 to 2006, the importance of biomass burning, the effect of using boundary conditions from different global models, and the role of heterogeneous chemistry on the predictions are also presented. The impacts of heterogeneous reactions at specific times during dust transport episodes can be significant, and in the presence of dust both sulfate and nitrate aerosol production is increased and gas phase nitric acid levels are reduced appreciably (~50%). The aging of the air masses during the long range transport over the Pacific and the impact of various sources (source regions as well as energy and biomass burning) on targeted observations are analyzed using back-trajectories and tagged CO-tracer analysis.

Description: The exchange of Ammonia (NH3) between grassland and the atmosphere was determined using Relaxed Eddy Accumulation (REA) measurements. The use of REA is of special interest for NH3, since the determination of fluxes at one height permits multiple systems to be deployed to quantify vertical flux divergence (either due to effects of chemical production or advection). During the Braunschweig integrated experiment four different continuous-sampling REA systems were operated during a period of about 10 days and were compared against a reference provided by independent application of the Aerodynamic Gradient Method (AGM). The experiment covered episodes before and after both cutting and fertilizing and provided a wide range of fluxes −60–3600 ng NH3 m−2 s−1 for testing the REA systems. The REA systems showed moderate to good correlation with the AGM estimates, with r2 values for the linear regressions between 0.3 and 0.82. For the period immediately after fertilization, the REA systems showed average fluxes 20% to 70% lower than the reference. At periods with low fluxes REA and AGM can agree within a few %. Overall, the results show that the continuous REA technique can now be used to measure NH3 surface exchange fluxes. While REA requires greater analytical precision in NH3 measurement than the AGM, a key advantage of REA is that reference sampling periods can be introduced to remove bias between sampling inlets. However, while the data here indicate differences consistent with advection effects, significant improvements in sampling precision are essential to allow robust determination of flux divergence in future studies. Wet chemical techniques will be developed further since they use the adsorptive and reactive properties of NH3 that impedes development of cheaper optical systems.

Description: Anaerobic oxidation of methane (AOM) and sulfate reduction (SRR) were investigated in sediments of the western Black Sea, where upward methane transport is controlled by diffusion. To understand the regulation and dynamics of methane production and oxidation in the Black Sea, rates of methanogenesis, AOM, and SRR were determined using radiotracers in combination with pore water chemistry and stable isotopes. In the Danube Canyon and the Dnjepr palaeo-delta AOM did not consume methane effectively and upwards diffusing methane created an extended sulfate-methane transition zone (SMTZ) that spread over more than 2.5 m and was located in brackish and limnic sediment. Measurable AOM rates occurred mainly in the lower part of the SMTZ, sometimes even at depths where sulfate seemed to be unavailable. The inefficiency of methane oxidation appears to be linked to the paleoceanographic history of the sediment, since in all cores methane was completely oxidized at the transition from the formerly oxic brackish clays to marine anoxic sediments. The upward tailing of methane was less pronounced in a core from the deep sea in the area of the Dnjepr Canyon, the only station with a SMTZ close to the marine deposits. Sub-surface sulfate reduction rates were mostly extremely low, and in the SMTZ were even lower than AOM rates. Rates of bicarbonate-based methanogenesis were below detection limit in two of the cores, but δ13C values of methane indicate a biogenic origin. The most δ13C- depleted isotopic signal of methane was found in the SMTZ of the core from the deep sea, most likely as a result of carbon recycling between AOM and methanogenesis.

Description: In-canopy turbulence is a required input to study pollutant cycling and chemistry within plant canopies and to link concentrations and sources. Despite the importance of grasslands worldwide, most previous work has focused on forests and crops. Here, turbulence parameters in a mature agricultural grassland canopy were measured with a combination of a small ultrasonic anemometer, hotwire anemometry and a radon (Rn) tracer technique, as part of a measurement to study ammonia (NH3) exchange with grassland. The measurements are used to derive vertical profiles of basic turbulent parameters, for quadrant-hole analysis of the two-parametric frequency distributions of u'−w' and to derive in-canopy eddy diffusivities as input for models of in-canopy tracer transport. The results are in line with previous measurements on taller canopies, but shows increased decoupling between in-canopy flow and above-canopy turbulence. The comparison of sonic anemometry and Rn measurements implies that Lagrangian time-scales must decrease sharply at the ground, with important implications for estimating the magnitude of ground-level and soil emissions from concentration measurements. Atmospheric stability above and within the canopy has little influence on the standard deviation of vertical wind component inside the canopy. Use of the turbulence parameters in an analytical Lagrangian framework, which is here validated for heat transfer, suggests that measured in-canopy profiles of NH3 are consistent with a ground-level source, presumably from senescent plant parts, which is recaptured by the overlying canopy.