ALBERT

Notes: Xylella fastidiosa strains are responsible for several plant diseases and since such isolates display a broad host range and complex biological behavior, genomic comparisons employing microarray hybridizations may provide an effective method to compare them. Thus, we performed a thorough validation of this type of approach using two recently sequenced strains of this phytopathogen. By matching microarray hybridization results to direct sequence comparisons, we were able to establish precise cutoff ratios for common and exclusive sequences, allowing the identification of exclusive genes involved in important biological traits. This validation will enable the use of microarray-based comparisons across a wide variety of microorganisms

Notes: Bacillus anthracis was isolated and identified from a bacterial collection of samples from the Amazon river bank. Type II restriction endonuclease activity was detected in this prokaryote, the enzyme was purified, the molecular mass of the native protein estimated by gel filtration, and optima pH, temperature and salt requirements were determined. Quality control assays showed complete absence of ‘non-specific nucleases’. Restriction cleavage analysis and DNA sequencing of restriction fragments allowed unequivocal demonstration of 5′-GG↓CC-3′ as the recognition sequence. This enzyme was named Ban AI and is therefore an isoschizomer of the prototype restriction endonuclease Hae III. This is the first report of a type II restriction endonuclease identified, purified from a natural isolate of B. anthracis.

Notes: The gene bolA has been shown to trigger the formation of osmotically stable round cells when overexpressed in stationary phase. We show that in poor growth conditions bolA is essential for normal cell morphology in stationary phase and under conditions of starvation. During exponential growth bolA promotes round morphology through a mechanism that is strictly dependent on the two main Escherichia colid,d-carboxypeptidases, PBP5 and PBP6. The results show that bolA controls the levels of transcription of dacA (PBP5), dacC (PBP6) and ampC (AmpC), a class C β-lactamase, thus connecting for the first time penicillin binding proteins (PBPs) and β-lactamases at the level of gene regulation. Furthermore, PBP5 and PBP6 are shown to be independently regulated and to have distinct effects on the peptidoglycan layer. The evidence presented demonstrates that bolA is a regulator of cell wall biosynthetic enzymes with different roles in cell morphology and cell division.

Notes: Aluminium (A1) tolerance of 63 rye accessions from a world spring rye collection was evaluated using the haematoxylin method and the root growth method. The haematoxylin method is based on the ability of A1-tolerant seedlings to continue root growth following a short pulse treatment with a high Al concentration, while the root growth method uses the root growth and root tolerance index to judge A1 tolerance. Significantly higher levels of A1 tolerance were found in rye than in the A1-tolerant bread wheat cultivar ‘Maringa’. Under the assumption that the ability of roots to grow under A1 stress is a combination of root vigour (long roots) and A1 tolerance, a hypothesis allowing for the differentiation of five genotype classes was suggested. This study demonstrated that the haematoxylin method and the root growth parameter identify genotypes with long root growth under A1 stress, but failed to detect A1 tolerance in genotypes with poor root vigour. These genotypes can only be identified using the root tolerance index parameter. However, the haematoxylin method is highly suitable for screening large segregating populations derived from improved germplasm that has been preselected for agronomically preferable traits, including plant vigour.

Notes: The zero erucic acid Ethiopian mustard lines developed so far are characterized by an exceptionally high linolenic acid content in the seed oil. The mutant line N2-4961, expressing low linolenic acid content in a high erucic acid background, was developed through chemical mutagenesis. The objective of this research was to study the inheritance of low linolenic acid content in this mutant. Line N2-4961 was reciprocally crossed with its parent line C-101 and the linolenic acid content of the reciprocal F1, F2 and BC1 generations was studied. No maternal, cytoplasmic or dominance effects were detected in the analysis of F1 seeds and F1 plants from reciprocal crosses. Linolenic acid content segregated in 1: 2: 1 ratios in all the F2 populations studied, suggesting monogenic inheritance. This was confirmed with the analysis of the reciprocal backcross generation. The simple inheritance of low linolenic acid content in N2-4961 will facilitate the transference of this trait to zero erucic acid lines of Ethiopian mustard.

Notes: In this paper, we present new seismic and heat-flow data that show the base of the hydrate stability zone (BHSZ) in Lake Baikal to be locally characterized by abnormal variations in depth, with distinct regions of deeper-than-normal and regions of shallower-than-normal BHSZ. These variations are related to strong lateral variations in heat flow, and occur in close association with important rift-basin faults. Areas of shallow BHSZ are also characterized by the presence of several methane seeps and mud volcanoes at the lake floor. We infer that the seeps are the surface expression of escape pathways for overpressured fluids generated by the dissociation of pre-existing hydrates, in response to a thermal pulse caused by an upward flow of hydrothermal fluids towards the BHSZ. It thus seems that present-day hydrate dissociation in Lake Baikal is modulated by the tectonic activity in the rift rather than by – climatically controlled – changes in lake level or water temperature.

Notes: The response of the bipolar moss Sanionia uncinata (Hedw.) Loeske to ambient and enhanced UV-B radiation was investigated at an Antarctic (Léonie Island, 67°35′ S, 68°20′ W) and an Arctic (Ny-Alesund, 78°55′ N, 11°56′ E) site, which differed in ambient UV-B radiation (UV-BR: 280–320 nm) levels. The UV-BR effects on DNA damage and photosynthesis were investigated in two types of outdoor experiments. First of all, sections of turf of S. uncinata were collected in an Arctic and Antarctic field site and exposed outdoors to ambient and enhanced UV-BR for 2 d using UV-B Mini-lamps. During these experiments, chlorophyll a fluorescence, chlorophyll concentration and cyclobutyl pyrimidine dimer (CPD) formation were measured. Secondly, at the Antarctic site, a long-term filter experiment was conducted to study the effect of ambient UV-BR on growth and biomass production. Additionally, sections of moss turf collected at both the Antarctic and the Arctic site were exposed to UV-BR in a growth chamber to study induction and repair of CPDs under controlled conditions. At the Antarctic site, a summer midday maximum of 2·1 W m−2 of UV-BR did not significantly affect effective quantum yield (ΔF/Fm′) and the ratio of variable to maximal fluorescence (Fv/Fm). The same was found for samples of S. uncinata exposed at the Arctic site, where summer midday maxima of UV-BR were about 50% lower than at the Antarctic site. Exposure to natural UV-BR in summer did not increase CPD values significantly at both sites. Although the photosynthetic activity remained largely unaffected by UV-B enhancement, DNA damage clearly increased as a result of UV-B enhancement at both sites. However, DNA damage induced during the day by UV-B enhancement was repaired overnight at both sites. Results from the long-term filter experiment at the Antarctic site indicated that branching of S. uncinata was reduced by reduction of ambient summer levels of UV-BR, whereas biomass production was not affected. Exposure of specimens collected from both sites to UV-BR in a growth chamber indicated that Antarctic and Arctic S. uncinata did not differ in UV-BR-induced DNA damage. It was concluded that S. uncinata from both the Antarctic and the Arctic site is well adapted to ambient levels of UV-BR.

Notes: The present study investigated whether the cold-sensitive character of soybean is reflected at the level of mitochondrial membranes. When exposed to an increase of temperature (from 25 to 35 °C), mitochondrial membranes were characterized by a higher phosphatidylcholine : phosphatidylethanolamine ratio and a lower content in 18 : 3 fatty acid. After a reduction of temperature (from 25 to 18 °C) the opposite changes were found. Lipid lateral diffusion and local microviscosity appeared to be comparable in mitochondria from plantlets grown at 25 or 35 °C when assayed at the respective growth temperatures. Some functional aspects (cytochrome c oxidase activity or membrane conductance) tended to this behaviour whereas others (respiration rate or maximum membrane potential) did not. On the other hand, membranes from plants grown at 18 °C were more rigid. Moreover, as illustrated by cytochrome c oxidase activity or respiration rate, functional measurements suggested that these membranes were less active at this temperature. Thus the dynamic characteristics and functional properties measured in mitochondrial membranes were in favour of an adaptive trend at 35 °C, but not at 18 °C despite changes in lipid composition, in accordance with the cold-sensitive character of the plant.

Notes: In order to investigate the annual variation of soil respiration and its components in relation to seasonal changes in soil temperature and soil moisture in a Mediterranean mixed oak forest ecosystem, we set up a series of experimental treatments in May 1999 where litter (no litter), roots (no roots, by trenching) or both were excluded from plots of 4 m2. Subsequently, we measured soil respiration, soil temperature and soil moisture in each plot over a year after the forest was coppiced. The treatments did not significantly affect soil temperature or soil moisture measured over 0–10 cm depth.Soil respiration varied markedly during the year with high rates in spring and autumn and low rates in summer, coinciding with summer drought, and in winter, with the lowest temperatures. Very high respiration rates, however, were observed during the summer immediately after rainfall events. The mean annual rate of soil respiration was 2.9 µmol m−2 s−1, ranging from 1.35 to 7.03 µmol m−2 s−1.Soil respiration was highly correlated with temperature during winter and during spring and autumn whenever volumetric soil water content was above 20%. Below this threshold value, there was no correlation between soil respiration and soil temperature, but soil moisture was a good predictor of soil respiration. A simple empirical model that predicted soil respiration during the year, using both soil temperature and soil moisture accounted for more than 91% of the observed annual variation in soil respiration.All the components of soil respiration followed a similar seasonal trend and were affected by summer drought. The Q10 value for soil respiration was 2.32, which is in agreement with other studies in forest ecosystems. However, we found a Q10 value for root respiration of 2.20, which is lower than recent values reported for forest sites. The fact that the seasonal variation in root growth with temperature in Mediterranean ecosystems differs from that in temperate regions may explain this difference. In temperate regions, increases in size of root populations during the growing season, coinciding with high temperatures, may yield higher apparent Q10 values than in Mediterranean regions where root growth is suppressed by summer drought.The decomposition of organic matter and belowground litter were the major components of soil respiration, accounting for almost 55% of the total soil respiration flux. This proportion is higher than has been reported for mature boreal and temperate forest and is probably the result of a short-term C loss following recent logging at the site.The relationship proposed for soil respiration with soil temperature and soil moisture is useful for understanding and predicting potential changes in Mediterranean forest ecosystems in response to forest management and climate change.