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  • Seismological Society of America  (2)
  • Blackwell Science, Ltd  (1)
  • 2015-2019
  • 2000-2004  (3)
  • 2000  (3)
  • 1
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: Enteropathogenic Escherichia coli (EPEC) produces attaching and effacing lesions (AE) on epithelial cells. The genes involved in the formation of the AE lesions are contained within a pathogenicity island named the locus of enterocyte effacement (LEE). The LEE comprises 41 open reading frames organized in five major operons: LEE1, LEE2, LEE3, LEE4 and tir. The first gene of the LEE1 operon encodes a transcription activator of the other LEE operons that is called the LEE-encoded regulator (Ler). The LEE2 and LEE3 operons are divergently transcribed with overlapping −10 promoter regions, and gene fusion studies have shown that they are both activated by Ler. Deletion analysis, using lacZ reporter fusions, of the LEE2 and LEE3 promoters demonstrated that deletions extending closer to the LEE2 transcription start site than −247 bp lead to loss of activation by Ler, whereas only 70 bp upstream of the LEE3 transcription start site is required for Ler-mediated activation. We have purified Ler as a His-tagged protein and used it to perform DNA-binding assays with LEE2 and LEE3. We observed that Ler bound to a DNA fragment containing the −300 to +1 region of LEE2; however, it failed to bind to a DNA fragment containing the −300 to +1 region of LEE3, suggesting that Ler activates both operons by only binding to the regulatory region upstream of LEE2. The Ler-activatable LEE3::lacZ fusions extended to what would be −246 bp of the LEE2 operon. A lacZ fusion from the −300 to +1 region of LEE3 failed to be activated by Ler, consistent with our hypothesis that Ler activates the expression of LEE2 and LEE3 by binding to a region located downstream of the LEE3 transcription start site. DNase I footprinting revealed that Ler protected a region of 121 bp upstream of LEE2. Purified Ler mutated in the coiled-coil domain was unable to activate transcription and to bind to the LEE2 regulatory region. These data indicate that Ler may bind as a multimer to LEE2 and activate both divergent operons by a novel mechanism potentially involving changes in the DNA structure.
    Type of Medium: Electronic Resource
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  • 2
    Publication Date: 2000-03-01
    Print ISSN: 0895-0695
    Electronic ISSN: 1938-2057
    Topics: Geosciences
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  • 3
    Publication Date: 2000-10-01
    Description: We used the 3D finite-difference method to model observed seismograms of two earthquakes (M (sub L) 4.9 and 3.5) in the Seattle region and to simulate ground motions for hypothetical M 6.5 and M 5.0 earthquakes on the Seattle fault, for periods greater than 2 sec. A 3D velocity model of the Seattle Basin was constructed from studies that analyzed seismic-reflection surveys, borehole logs, and gravity and aeromagnetic data. The observations and the simulations highlight the importance of the Seattle Basin on long-period ground motions. For earthquakes occurring just south of the basin, the edge of the basin and the variation of the thickness of the Quaternary deposits in the basin produce much larger surface waves than expected from flat-layered models. The data consist of seismograms recorded by instruments deployed in Seattle by the USGS and the University of Washington (UW). The 3D simulation reproduces the peak amplitude and duration of most of the seismograms of the June 1997 Bremerton event (M (sub L) 4.9) recorded in Seattle. We found the focal mechanism for this event that best fits the observed seismograms in Seattle by combining Green's functions determined from the 3D simulations for the six fundamental moment couples. The February 1997 event (M (sub L) 3.5) to the south of the Seattle Basin exhibits a large surface-wave arrival at UW whose amplitude is matched by the synthetics in our 3D velocity model, for a source depth of 9 km. The M 6.5 simulations incorporated a fractal slip distribution on the fault plane. These simulations produced the largest ground motions in an area that includes downtown Seattle. This is mainly caused by rupture directed up dip toward downtown, radiation pattern of the source, and the turning of S waves by the velocity gradient in the Seattle basin. Another area of high ground motion is located about 13 km north of the fault and is caused by an increase in the amplitude of higher-mode Rayleigh waves caused by the thinning of the Quaternary deposits.
    Print ISSN: 0037-1106
    Electronic ISSN: 1943-3573
    Topics: Geosciences , Physics
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