ALBERT

Description: This study presents the latest updates to the Audubon Society of Western Pennsylvania (ASWP) testbed, a $50,000 USD, 104-node outdoor multi-hop wireless sensor network (WSN). The network collects environmental data from over 240 sensors, including the EC-5, MPS-1 and MPS-2 soil moisture and soil water potential sensors and self-made sap flow sensors, across a heterogeneous deployment comprised of MICAz, IRIS and TelosB wireless motes. A low-cost sensor board and software driver was developed for communicating with the analog and digital sensors. Innovative techniques (e.g., balanced energy efficient routing and heterogeneous over-the-air mote reprogramming) maintained high success rates (>96%) and enabled effective software updating, throughout the large-scale heterogeneous WSN. The edaphic properties monitored by the network showed strong agreement with data logger measurements and were fitted to pedotransfer functions for estimating local soil hydraulic properties. Furthermore, sap flow measurements, scaled to tree stand transpiration, were found to be at or below potential evapotranspiration estimates. While outdoor WSNs still present numerous challenges, the ASWP testbed proves to be an effective and (relatively) low-cost environmental monitoring solution and represents a step towards developing a platform for monitoring and quantifying statistically relevant environmental parameters from large-scale network deployments.

Description: During 2014 exceptionally warm water temperatures developed across a wide area off the California coast and within San Francisco Bay (SFB) and persisted into 2016. Observations and numerical model output are used to document this warming and determine its origins. The coastal warming was mostly confined to the upper 100 meters of the ocean and was manifested strongly in the two leading modes of upper ocean (0-100 m) temperature variability in the extra-tropical eastern Pacific. Observations suggest that the coastal warming in 2014 propagated into nearshore regions from the west while later indicating a warming influence that propagated from south to north into the region associated with the 2015-16 El Niño event. An analysis of the upper ocean (0-100 m) heat budget in a Regional Ocean Modeling System simulation confirmed this scenario. The results from a set of sensitivity runs with the model in which the lateral boundary conditions varied supported the conclusions drawn from the heat budget analysis. Concerning the warming in the SFB, an examination of the observations and the heat budget in an unstructured-grid numerical model simulation suggested that the warming during the second half of 2014 and early 2016 originated in the adjacent California coastal ocean and propagated through the Golden Gate into the Bay. The finding that the coastal and Bay warming are due to the relatively slow propagation of signals from remote sources raises the possibility that such warming events may be predictable many months or even several seasons in advance.

Description: Distinguishing between local, anthropogenic nutrient inputs and large-scale climatic forcing as drivers of coastal phytoplankton biomass is critical to developing effective nutrient management strategies. Here we assess the relative importance of these two drivers by comparing trends in chlorophyll- a between shallow coastal (0.1–16.5 km) and deep offshore (17–700 km) areas, hypothesizing that coastal regions influenced by anthropogenic nutrient inputs may have different spatial and temporal patterns in chlorophyll- a concentration from offshore regions where coastal inputs are less influential. Quarterly conductivity-temperature-depth (CTD) fluorescence measurements collected from three southern California continental shelf regions since 1998 were compared to chlorophyll- a data from the more offshore California Cooperative Fisheries Investigations (CalCOFI) program. The trends in the coastal zone were similar to those offshore, with a gradual increase of chlorophyll-a biomass and shallowing of its maximum layer since the beginning of observations, followed by chlorophyll- a declining and deepening from 2010 to present. An exception was the northern coastal part of SCB, where chlorophyll- a continued increasing after 2010. The long-term increase in chlorophyll- a prior to 2010 was correlated with increased nitrate concentrations in deep waters, while the recent decline was associated with deepening of the upper mixed layer, both linked to the low-frequency climatic cycles of the Pacific Decadal Oscillation and North Pacific Gyre Oscillation. These large-scale factors affecting the physical structure of the water column may also influence the delivery of nutrients from deep ocean outfalls to the euphotic zone, making it difficult to distinguish the effects of anthropogenic inputs on chlorophyll along the coast.

Description: A long period grating (LPG) modified with a mesoporous film infused with a calixarene as a functional compound was employed for the detection of individual volatile organic compounds (VOCs) and their mixtures. The mesoporous film consisted of an inorganic part, SiO2 nanoparticles (NPs), along with an organic moiety of poly(allylamine hydrochloride) polycation PAH, which was finally infused with the functional compound, p-sulphanato calix[4]arene (CA[4]) or p-sulphanato calix[8]arene (CA[8]). The LPG sensor was designed to operate at the phase matching turning point to provide the highest sensitivity. The sensing mechanism is based on the measurement of the refractive index (RI) change induced by a complex of the VOCs with calixarene. The LPG, modified with a coating of 5 cycles of (SiO2 NPs/PAH) and infused with CA[4] or CA[8], was exposed to chloroform, benzene, toluene and acetone vapours. The British Standards test of the VOCs emissions from material (BS EN ISO 16000-9:2006) was used to test the LPG sensor performance.

Description: Coral reefs are built of calcium carbonate (CaCO 3 ) produced biogenically by a diversity of calcifying plants, animals and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO 3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a two-week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the non-bleaching period was ∼8.5, significantly elevated above that of the surrounding open ocean (∼8.0-8.1) as a consequence of daytime NEP (up to 112 mmol C m −2 hr −1 ). Diurnal-averaged NEC was 390 ± 90 mmol CaCO 3 m −2 day −1 , higher than any other coral reef studied to date despite comparable calcifier cover (25%) and relatively high fleshy algal cover (19%). Coral bleaching linked to elevated temperatures significantly reduced daytime NEP by 29 mmol C m −2 hr −1 . pH on the reef flat declined by 0.2 units, causing a 40% reduction in NEC in the absence of pH changes in the surrounding open ocean. Our findings highlight the interactive relationship between carbonate chemistry of coral reef ecosystems and ecosystem production and calcification rates, which are in turn impacted by ocean warming. As open-ocean waters bathing coral reefs warm and acidify over the 21 st century, the health and composition of reef benthic communities will play a major role in determining on-reef conditions that will in turn dictate the ecosystem response to climate change.

Description: The oceanic response to high-frequency local diurnal wind forcing is examined in a small coastal embayment located along an understudied stretch of the central California coast. We show that local diurnal wind forcing is the dominant control on nearshore temperature variability and circulation patterns. A complex empirical orthogonal function (CEOF) analysis of velocities in San Luis Obispo Bay reveals that the first mode CEOF amplitude time series, which accounts for 47.9% of the variance, is significantly coherent with the local wind signal at the diurnal frequency and aligns with periods of weak and strong wind forcing. The diurnal evolution of the hydrographic structure and circulation in the bay is examined using both individual events and composite-day averages. During the late afternoon, the local wind strengthens and results in a sheared flow with near-surface warm waters directed out of the bay and a compensating flow of colder waters into the bay over the bottom portion of the water column. This cold water intrusion into the bay causes isotherms to shoal towards the surface and delivers subthermocline waters to shallow reaches of the bay, representing a mechanism for small-scale upwelling. When the local winds relax, the warm water mass advects back into the bay in the form of a buoyant plume front. Local diurnal winds are expected to play an important role in nearshore dynamics and local upwelling in other small coastal embayments with important implications for various biological and ecological processes. This article is protected by copyright. All rights reserved.

Description: Sequences of correlated seafloor temperature, current velocity and acoustic backscatter events recorded at Ocean Drilling Program (ODP) sites at 4300 m depth in the Middle America Trench have been inferred to result from tidally-induced turbidity currents generated in the vicinity of the 3300-m deep sill at the southern end of the trench. New data from the borehole observatories extends the temperature records to 11 years (November 2002 to December 2013) and confirms the highly episodic nature of the events. We present satellite altimetry data and ocean circulation model results to show that event timing is correlated with intraseasonal Kelvin wave motions in the equatorial Pacific. The observed temperature events had a mean (±1standard deviation) occurrence interval of 61(±24) days, which spans the periods of the first two baroclinic modes. Lag times between peak bottom-water temperatures at the ODP sites and the passage of eastward propagating Kelvin wave crests at locations in the eastern equatorial Pacific are consistent with the time for mode-1 waves to propagate to the southern end of the trench at a mean phase speed of 2.0 m⋅s −1 . Findings indicate that Kelvin wave currents augment tidal motions in the vicinity of the sill, triggering turbidity currents that travel northwestward along the trench axis at mean speeds of ∼0.1 m⋅s −1 . We conclude that mode-1 (or, possibly, mixed mode-1 and mode-2) baroclinic Kelvin waves generated by large-scale atmospheric processes in the western tropical Pacific lead to heat and mass transport deep within Middle America Trench in the eastern tropical Pacific.

Description: A mechanomyography muscle contraction (MC) sensor, affixed to the skin surface, was used to quantify muscle tension during repetitive functional electrical stimulation (FES)-evoked isometric rectus femoris contractions to fatigue in individuals with spinal cord injury (SCI). Nine persons with motor complete SCI were seated on a commercial muscle dynamometer that quantified peak torque and average torque outputs, while measurements from the MC sensor were simultaneously recorded. MC-sensor-predicted measures of dynamometer torques, including the signal peak (SP) and signal average (SA), were highly associated with isometric knee extension peak torque (SP: r = 0.91, p 〈 0.0001), and average torque (SA: r = 0.89, p 〈 0.0001), respectively. Bland-Altman (BA) analyses with Lin’s concordance (ρC) revealed good association between MC-sensor-predicted peak muscle torques (SP; ρC = 0.91) and average muscle torques (SA; ρC = 0.89) with the equivalent dynamometer measures, over a range of FES current amplitudes. The relationship of dynamometer torques and predicted MC torques during repetitive FES-evoked muscle contraction to fatigue were moderately associated (SP: r = 0.80, p 〈 0.0001; SA: r = 0.77; p 〈 0.0001), with BA associations between the two devices fair-moderate (SP; ρC = 0.70: SA; ρC = 0.30). These findings demonstrated that a skin-surface muscle mechanomyography sensor was an accurate proxy for electrically-evoked muscle contraction torques when directly measured during isometric dynamometry in individuals with SCI. The novel application of the MC sensor during FES-evoked muscle contractions suggested its possible application for real-world tasks (e.g., prolonged sit-to-stand, stepping,) where muscle forces during fatiguing activities cannot be directly measured.