ALBERT

Notes: The aim of the present study was to test the four commonly used models to predict the dates of flowering of temperate-zone trees, the spring warming, sequential, parallel and alternating models. Previous studies concerning the performance of these models have shown that they were unable to make accurate predictions based on external data. One of the reasons for such inaccuracy may be wrong estimations of the parameters of each model due to the non-convergence of the optimization algorithm towards their maximum likelihood. We proposed to fit these four models using a simulated annealing method which is known to avoid local extrema of any kind of function, and thus is particularly well adapted to fit budburst models, as their likelihood function presents many local maxima. We tested this method using a phenological dataset deduced from aeropalynological data. Annual pollen spectra were used to estimate the dates of flowering of the populations around the sampling station. The results show that simulated annealing provides a better fit than traditional methods. Despite this improvement, classical models still failed to predict external data. We expect the simulated annealing method to allow reliable comparisons among models, leading to a selection of biologically relevant ones.

Notes: Many strains of mycobacteria produce two ferric chelating substances that are termed exochelin (an excreted product) and mycobactin (a cell-associated product). These agents may function as iron acquisition siderophores. To examine the genetics of the iron acquisition system in mycobacteria, ultraviolet (UV) and transposon (Tn611 ) mutagenesis techniques were used to generate exochelin-deficient mutants of Mycobacterium smegmatis strains ATCC 607 and LR222 respectively. Mutants were identified on CAS siderophore detection agar plates. Comparisons of the amounts of CAS-reactive material excreted by the possible mutant strains with that of the wild-type strains verified that seven UV mutant strains and two confirmed transposition mutant strains were deficient in exochelin production. Cell-associated mycobactin production in the mutants appeared to be normal. From the two transposon mutants, the mutated gene regions were cloned and identified by colony hybridization with an IS6100 probe, and the DNA regions flanking the transposon insertion sites were then used as probes to clone the wild-type loci from M. smegmatis LR222 genomic DNA. Complementation assays showed that an 8 kb Pst I fragment and a 4.8 kb Pst I/SacI subclone of this fragment complemented one transposon mutant (LUN2) and one UV mutant (R92). A 10.1 kb SacI fragment restored exochelin production to the other transposon mutant (LUN1). The nucleotide sequence of the 15.3 kb DNA region that spanned the two transposon insertion sites overlapped the 5′ region of the previously reported exochelin biosynthetic gene fxbA and contained three open reading frames that were transcribed in the opposite orientation to fxbA. The corresponding genes were designated exiT, fxbB and fxbC. The deduced amino acid sequence of ExiT suggested that it was a member of the ABC transporter superfamily, while FxbB and FxbC displayed significant homology with many enzymes (including pristinamycin I synthetase) that catalyse non-ribosomal peptide synthesis. We propose that the peptide backbone of the siderophore exochelin is synthesized in part by enzymes resembling non-ribosomal peptide synthetases and that the ABC transporter ExiT is responsible for exochelin excretion.

Notes: Many plants accumulate organic osmolytes in response to the imposition of environmental stresses that cause cellular dehydration. Although an adaptive role for these compounds in mediating osmotic adjustment and protecting subcellular structure has become a central dogma in stress physiology, the evidence in favour of this hypothesis is largely correlative. Transgenic plants engineered to accumulate proline, mannitol, fructans, trehalose, glycine betaine or ononitol exhibit marginal improvements in salt and/or drought tolerance. While these studies do not dismiss causative relationships between osmolyte levels and stress tolerance, the absolute osmolyte concentrations in these plants are unlikely to mediate osmotic adjustment. Metabolic benefits of osmolyte accumulation may augment the classically accepted roles of these compounds. In re-assessing the functional significance of compatible solute accumulation, it is suggested that proline and glycine betaine synthesis may buffer cellular redox potential. Disturbances in hexose sensing in transgenic plants engineered to produce trehalose, fructans or mannitol may be an important contributory factor to the stress-tolerant phenotypes observed. Associated effects on photoassimilate allocation between root and shoot tissues may also be involved. Whether or not osmolyte transport between subcellular compartments or different organs represents a bottleneck that limits stress tolerance at the whole-plant level is presently unclear. None the less, if osmolyte metabolism impinges on hexose or redox signalling, then it may be important in long-range signal transmission throughout the plant.

Notes: The evergreen species Yucca glauca was characterized at the end of September and following exposure to low temperatures at the end of November. In November the diurnal pattern of xanthophyll cycle-dependent energy dissipation was altered such that this thermal dissipation process was engaged at a high level throughout the day, whereas in September it only became engaged when leaves received direct sunlight. An analysis of the diurnal partitioning of the absorbed excitation energy into photochemistry versus thermal dissipation suggested that a smaller fraction of that energy was utilized in photochemistry and a greater fraction was dissipated thermally at the end of November compared to September. Lower ratios of Chl a/b and β-carotene/xanthophylls both suggested a decrease in the ratio of reaction centre plus core antenna proteins compared to light-harvesting proteins, and a lower leaf chlorophyll content suggested a decrease in light-harvesting capacity in November versus September. Thus adjustments to the photosynthetic apparatus occurred on several levels in response to the increase in excess excitation energy that Y. glauca experienced during the onset of winter.

Notes: Water relations of tomato fruit and the epidermal and pericarp activities of the putative cell wall loosening and tightening enzymes Xyloglucan endotransglycosylase (XET) and peroxidase were investigated, to determine whether tomato fruit growth is principally regulated in the epidermis or pericarp. Analysis of the fruit water relations and observation of the pattern of expansion of tomato fruit slices in vitro, has shown that the pericarp exerts tissue pressure on the epidermis in tomato fruit, suggesting that the rate of growth of tomato fruit is determined by the physical properties of the epidermal cell walls. The epidermal activities of XET and peroxidase were assayed throughout fruit development. Temporal changes in these enzyme activities were found to correspond well with putative cell wall loosening and stiffening during fruit development. XET activity was found to be proportional to the relative expansion rate of the fruit until growth ceased, and a peroxidase activity weakly bound to the epidermal cell wall appeared shortly before cessation of fruit expansion. No equivalent peroxidase activity was detected in pericarp tissue of any age. It is therefore plausible that the expansion of tomato fruit is regulated by the combined action of these enzyme activities in the fruit epidermis.

Notes: The Pliocene Loreto basin is an asymmetrical half graben located on the eastern margin of Baja California Sur, Mexico, which formed by rapid subsidence along the dextral-normal Loreto fault. The southern Loreto basin contains numerous, well exposed coarse-grained Gilbert-type fan deltas that were derived from the footwall of the Loreto fault. Detailed sedimentological study of individual foreset beds provides information about down-slope flow transformations of cohesionless sediment gravity flows in shallow water. Deposits of Gilbert-delta foresets consist of ungraded, normal-graded, inverse- to normal-graded, and bipartite conglomerate and sandstone. Lateral transitions in sorting, grading style and internal structure are commonly observed within individual beds, both across and down slope, suggesting heterogeneity within flows and a close relationship between high-density turbidity currents and gravel traction carpets. A conceptual model for flow transformation and deposition of high-density turbidity currents on Gilbert-delta foreset slopes is developed for Pliocene strata in the Loreto basin. In this model, ungraded cohesionless debris flows evolved rapidly down-slope into normal-graded gravelly turbidity currents. With continued down-slope transport, the gravel fraction collapses and becomes concentrated into a basal traction carpet undergoing laminar shear, and is over-ridden by a sandy turbulent suspension. The short distances (10–20 m) over which lateral transitions within single beds are observed indicate very rapid flow transformations (10–20 s) and rapid deposition of gravel traction carpets by frictional freezing on and near the base of the foreset slope.

Notes: 1. Aquatic insects were quantitatively surveyed at five sites along the tidally influenced section of a river-dominated estuary in North Wales. Site 1 was the furthest upstream and was established as a reference site as it was never inundated by salt water. Site 5 was the furthest downstream and was inundated by all incoming tides. Numerically, insects made up 32% of the estuarine invertebrate fauna.2. Although the densities of most insect taxa decreased towards the estuary mouth, there were significant numbers present downstream for much of the year; for example, in April at site 4 (which was inundated by 81% of all high tides), a mean of 3514 chironomid larvae were recorded per m2 of estuary bed. Even at site 5, which was inundated twice daily, there were 747 larvae per m2. Among the larger aquatic insects, caddisfly and elmid beetle larvae, together with stonefly nymphs, were consistently taken at site 4 (e.g. maxima of forty-eight caddisfly larvae m–2 in December and seventy elmids m–2 in April), although their densities were lower than upstream.3. There were seasonal shifts in the longitudinal distribution of several taxa, most notably the extension of chironomids down the estuary in April and July, and the concentration of simuliid larvae and mayfly nymphs at site 2 in July. The total freshwater benthos showed a downstream shift between September and December, which was maintained through April and into the summer. The latter was despite peak saltwater inundation (highest tides) in October, November and April. In June and July, when saltwater intrusion was lowest, the ranges of many aquatic insects had contracted to sites 1 and 2.4. Laboratory experiments showed that virtually all individuals of nineteen species of insects collected from site 1 (freshwater) survived a 4-h immersion in 8.75‰ saltwater (25% strength seawater). Immersion in progressively more saline solutions reduced the survivorship of first the mayflies, followed by the caddisflies Glossosoma conformis and Hydropsyche instabilis. After 4 h in full strength seawater, all specimens of the stonefly Dinocras cephalotes, over half of the Perla bipunctata, and some individuals of nine species of caddisfly were alive. Four species of caddisfly (Sericostoma personatum, Odontocerum albicorne, Potamophylax cingulatus and Adicella reducta) survived a 24-h simulated tidal cycle of immersion. With the exception of P. cingulatus, a few individuals of these caddisfly species survived immersion in full-strength seawater for 24 h. For some individual species there was good agreement between their observed longitudinal distribution in the estuary and laboratory-measured salinity tolerance; however, there was no significant correlation, overall, for the fauna.

Notes: 1. The rate of grazing damage experienced by submersed and floating leaves of water lilies (Nuphar variegata and Nymphaea odorata) was monitored in lakes in the Upper Peninsula of Michigan, U.S.A. Herbivores damaged 0.2–1.7% of the leaf surface of water lilies per day. These grazing rates differed between plant species, between submersed and floating leaves, and between lakes. Some leaves had more than 60% of their surface damaged and an overall mean of 16% damage occurred during the 2–3 week monitoring period of this study.2. Snapshot measurements of grazing damage on randomly collected submersed and floating leaves of Nuphar showed that submersed leaves were more damaged (11.0 ± 1.6%, n = 84) than floating leaves (3.8 ± 0.6%, n = 92). Overall, these 176 Nuphar leaves had 7.2% of their area damaged.3. Five species of herbivorous insects were commonly found on water lilies (Nymphaeacea). One primarily aquatic insect (sensuNewman 1991), a caddisfly larva (Trichoptera: Limniphilidae), had a generalized diet of water lilies, other macrophytes, algae, and detritus. Four of the five insects were from primarily terrestrial insect groups (Coleoptera and Diptera;‘secondary invaders’, sensuNewman 1991) and consumed only water lilies in food preference experiments.4. The feeding preferences of the generalist trichopteran were altered when the macrophytes were freeze-dried, ground into a powder, and reconstituted in an alginate gel. This suggests that plant structure may be an important feeding determinant for this insect. In contrast, a specialist weevil preferred its host plant in choice assays, regardless of whether fresh tissue or reconstituted macrophytes were used, suggesting this insect cued on a unique, non-structural property of its host plant.5. These results suggest that herbivory on freshwater macrophytes is of a similar magnitude to that on terrestrial plants. The findings of this study are consistent with the hypothesis that herbivorous insects of primarily terrestrial groups have a narrower diet breadth than insects of primarily aquatic groups.

Notes: 1. The total phosphorus–algal biomass relationship from a set of turbid tropical ponds in Kenya was compared with predictions derived from surveys of temperate and subtropical lakes. Despite high concentrations of total phosphorus (TP) (up to 797 μg L–1) and inorganic turbidity (up to 800 mg L–1), the log–log relationship between algal biomass and TP was steeper than expected.2. No evidence of nitrogen limitation was found at high TP, and total nitrogen (TN):TP ratios were higher than in lakes with similar TP levels studied previously. High TN:TP ratios may be a consequence of excretion by cattle into the ponds, a nutrient source characterized by a high ratio of available N to available P.3. Despite extremely high turbidity, the ratio of mixed layer depth to euphotic depth was generally low because these ponds are shallow (≤ 2 m), and was not related to algal yield. A positive relationship was also found between TP and zooplankton biomass, and between TP and the density of the zooplanktivorous bug, Anisops. In contrast, no relationship was found between fish biomass and TP, algal biomass or zooplankton biomass.

Notes: 1. Few studies have assessed the effects of macroconsumers, such as fishes and shrimps, on detritus and detritivores.2. We used an underwater electric field to prevent macroconsumers from feeding in and on leaf packs in a lowland stream in Costa Rica and thus to determine their effects on the density of insect detritivores and decay rates of leaves.3. Exclusion of macroconsumers resulted in significantly higher densities of small invertebrates inhabiting leaf packs. Most of these were collector–gatherers, none were shredders.4. Despite the increase in invertebrate density, decay rates of leaves were not statistically different. These findings contrast with results from temperate streams showing that increases in the density of invertebrates in leaf packs typically result in an increased rate of decay.5. Leaf decay rates and invertebrate densities were also compared between leaf packs placed in electric exclusion treatments and those placed in coarse (2 cm) plastic net bags (as used in many previous studies). Our results suggest that using such netting in tropical streams may deter macroconsumers, which can affect insect density and, potentially, decay rates of organic matter.