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  • 1
    Publication Date: 2022-10-31
    Description: Dataset: CTD AR29 and TN368
    Description: CTD casts from the first cruise and third cruises of the SPIROPA project. The first cruise (AR29), took place aboard the R/V Neil Armstrong in April 2018 and the third cruise (TN368) took place on the R/V Thomas G. Thompson cruise in July of 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/807119
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1657803
    Keywords: Temperature ; Salinity ; Fluorescence
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 2
    Publication Date: 2022-10-31
    Description: Dataset: CTD AR29, RB1904 and TN3638
    Description: CTD casts from the first, second and third cruises of the SPIROPA project. The first cruise (AR29), took place aboard the R/V Neil Armstrong in April 2018, the second cruise (RB1904) on the Ronald H. Brown in May 2019 and the third cruise (TN368) took place on the R/V Thomas G. Thompson cruise in July of 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/807119
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1657803
    Keywords: Temperature ; Salinity ; Fluorescence
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 3
    Publication Date: 2022-10-31
    Description: Dataset: Discrete Seawater Samples
    Description: Discrete seawater samples collected at the surface, 1 m below the surface, and 1 m above the bottom two times a week at each mooring (Kelp and Outside) from June 12, 2018 to August 3, 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/826410
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; DIC ; Alkalinity ; PH ; Temperature ; Salinity
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 4
    Publication Date: 2022-10-31
    Description: Dataset: Inside and Outside Kelp Forest Mooring
    Description: Data from moored instruments (pH, dissolved oxygen, temperature, salinity, PAR, pressure) at 9 depths outside (36° 37.342’ N, 121° 54.049’ W) and inside the kelp canopy (36° 37.297’ N, 121° 54.102’ W.) at Hopkins Marine Station, recorded between June and October 2018. The tidal depth of the kelp canopy mooring ranges from 8 to 11 meter. The outside mooring is located 115m north and offshore from the kelp forest, the tidal range is 16 to 9 meters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/822549
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737096, NSF Division of Ocean Sciences (NSF OCE) OCE-1737176
    Keywords: Ocean acidification ; Kelp forest ; Biogeochemistry ; Spatiotemporal variability ; Upwelling ; PH ; Oxygen ; Temperature ; Salinity ; PAR
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 5
    Publication Date: 2022-10-31
    Description: Dataset: CTD AR29 and TN368: Diatom Hotspot Data
    Description: CTD casts from the first cruise and third cruises of the SPIROPA project. The first cruise (AR29 Transect 24), took place aboard the R/V Neil Armstrong in April 2018 and the third cruise (TN368) took place on the R/V Thomas G. Thompson cruise in July of 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/807119
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1657803
    Keywords: Temperature ; Salinity ; Fluorescence
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 6
    Publication Date: 2022-10-26
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 125(2), (2020): e2019JC015856, doi:10.1029/2019JC015856.
    Description: Summer temperature and velocity measurements from 14 years in 15 m of water over the inner shelf off Oregon were used to investigate interannual temperature variability and the capacity of the across‐shelf heat flux to buffer net surface warming. There was no observable trend in summer mean temperatures, and the standard deviation of interannual variability (0.5°C) was less than the standard deviation in daily temperatures each summer (1.6°C, on average). Yet net surface heat flux provided a nearly constant source of heat each year, with a standard deviation less than 15 urn:x-wiley:jgrc:media:jgrc23812:jgrc23812-math-0001 of the interannual mean. The summer mean across‐shelf upwelling circulation advected warmer water offshore near the surface, cooling the inner shelf and buffering the surface warming. In most years (11 out of 14), this two‐dimensional heat budget roughly closed with a residual less than 20 urn:x-wiley:jgrc:media:jgrc23812:jgrc23812-math-0002 of the leading term. Even in years when the heat budget did not balance, the observed temperature change was negligible, indicating that an additional source of cooling was needed to close the budget. A comparison of the residual to the interannual variability in fields such as along‐shelf wind stress, stratification, and along‐shelf currents found no significant correlation, and further investigation into the intraseasonal dynamics is recommended to explain the results. An improved understanding of the processes that contribute to warming or cooling of the coastal ocean has the potential to improve predictions of the impact of year‐to‐year changes in local winds and circulation, such as from marine heat waves or climate change, on coastal temperatures.
    Description: The authors would like to acknowledge the David and Lucile Packard Foundation and The Gordon and Betty Moore Foundation for their support of the Partnership for Interdisciplinary Studies of Coastal Oceans (PISCO) mooring program. This paper is PISCO contribution 504. The contributions of A. Kirincich and S. Lentz were supported by National Science Foundation (NSF) Grant OCE‐1558874). E. Lemagie was partially supported by NSF Grant OCE‐1558874 as well as the Woods Hole Oceanographic Institution Postdoctoral Scholars program. Temperature and velocity data were collected and made available by PISCO (www.piscoweb.org). The NDBC and NWPO3 buoy data are freely available from NOAA (www.ndbc.noaa.gov). Surface heat flux reanalyses were download online: ERA5 was accessed through www.ecmwf.int/en/forecasts/datasets/reanalysis-datasets/era5, and NCEP and OAFlux data were downloaded from www.esrl.noaa.gov/psd/data/gridded/data.ncep.reanalysis.html and http://oaflux.whoi.edu/, respectively.
    Description: 2020-07-24
    Keywords: Inner shelf ; Heat budget ; Temperature ; PISCO ; Oregon coast ; Upwelling
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
    Publication Date: 2022-07-28
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lonati, G., Zitterbart, D. P., Miller, C. A., Corkeron, P. J., Murphy, C. T., & Moore, M. J. Investigating the thermal physiology of critically endangered North Atlantic right whales Eubalaena glacialis via aerial infrared thermography. Endangered Species Research, 48, (2022): 139–154, https://doi.org/10.3354/esr01193.
    Description: The Critically Endangered status of North Atlantic right whales Eubalaena glacialis (NARWs) warrants the development of new, less invasive technology to monitor the health of individuals. Combined with advancements in remotely piloted aircraft systems (RPAS, commonly ‘drones’), infrared thermography (IRT) is being increasingly used to detect and count marine mammals and study their physiology. We conducted RPAS-based IRT over NARWs in Cape Cod Bay, MA, USA, in 2017 and 2018. Observations demonstrated 3 particularly useful applications of RPAS-based IRT to study large whales: (1) exploring patterns of cranial heat loss and providing insight into the physiological mechanisms that produce these patterns; (2) tracking subsurface individuals in real-time (depending on the thermal stratification of the water column) using cold surface water anomalies resulting from fluke upstrokes; and (3) detecting natural changes in superficial blood circulation or diagnosing pathology based on heat anomalies on post-cranial body surfaces. These qualitative applications present a new, important opportunity to study, monitor, and conserve large whales, particularly rare and at-risk species such as NARWs. Despite the challenges of using this technology in aquatic environments, the applications of RPAS-based IRT for monitoring the health and behavior of endangered marine mammals, including the collection of quantitative data on thermal physiology, will continue to diversify.
    Description: All activities were conducted under NOAA permit 18355-01 and were approved by Woods Hole Oceanographic Institution’s Institutional Animal Care and Use Committee (IACUC). The RPAS pilot-in-command was certified through the United States Federal Aviation Admin-istration. We thank Amy Knowlton (Anderson Cabot Center for Ocean Life at the New England Aquarium) for photo-identifying individual North Atlantic right whales and Rocky Geyer (Woods Hole Oceanographic Institution) for providing and interpreting water temperature data relatedto the observations of thermal flukeprints (courtesy of the Massachusetts Water Resources Authority). We also appreciate constructive conversations with Iain Kerr (Ocean Alliance), Chris Zadra (Ocean Alliance), and Joy Reidenberg (Icahn School of Medicine at Mount Sinai). Funding was provided by a Woods Hole Oceanographic Research Opportunity grant, the North Pond Foundation, and NMFS NA14OAR4320158.
    Keywords: Cetaceans ; Drone ; Health ; Marine mammals ; Remote sensing ; Temperature ; UAVs
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Inomura, K., Deutsch, C., Wilson, S. T., Masuda, T., Lawrenz, E., Lenka, B., Sobotka, R., Gauglitz, J. M., Saito, M. A., Prášil, O., & Follows, M. J. Quantifying oxygen management and temperature and light dependencies of nitrogen fixation by Crocosphaera watsonii. Msphere, 4(6), (2019): e00531-19, doi: 10.1128/msphere.00531-19.
    Description: Crocosphaera is a major dinitrogen (N2)-fixing microorganism, providing bioavailable nitrogen (N) to marine ecosystems. The N2-fixing enzyme nitrogenase is deactivated by oxygen (O2), which is abundant in marine environments. Using a cellular scale model of Crocosphaera sp. and laboratory data, we quantify the role of three O2 management strategies by Crocosphaera sp.: size adjustment, reduced O2 diffusivity, and respiratory protection. Our model predicts that Crocosphaera cells increase their size under high O2. Using transmission electron microscopy, we show that starch granules and thylakoid membranes are located near the cytoplasmic membranes, forming a barrier for O2. The model indicates a critical role for respiration in protecting the rate of N2 fixation. Moreover, the rise in respiration rates and the decline in ambient O2 with temperature strengthen this mechanism in warmer water, providing a physiological rationale for the observed niche of Crocosphaera at temperatures exceeding 20°C. Our new measurements of the sensitivity to light intensity show that the rate of N2 fixation reaches saturation at a lower light intensity (∼100 μmol m−2 s−1) than photosynthesis and that both are similarly inhibited by light intensities of 〉500 μmol m−2 s−1. This suggests an explanation for the maximum population of Crocosphaera occurring slightly below the ocean surface.
    Description: We thank Stephanie Dutkiewicz and Sallie W. Chisholm for useful discussion, Martin Lukeš for technical assistance for the N2 fixation measurement, and the members of Writing and Communication Center at MIT for their advice on writing. This research was supported by the Japan Student Service Organization (JASSO) (grant L11171020001 to K.I.), the Gordon and Betty Moore Foundation (grant GBMF 3775 to C.D. and grant GBMF 3778 to M.J.F.), the U.S. National Science Foundation (grant OCE-1756524 to S.T.W., grant OCE-1558702 to M.J.F., and grant OCE-PRF 1421196 to J.M.G), the Simons Foundation (Simons Postdoctoral Fellowship in Marine Microbial Ecology award 544338 to K.I., Simons Collaboration on Ocean Processes and Ecology award 329108 to M.J.F., Simons Collaboration on Computational BIOgeochemical Modeling of Marine EcosystemS [CBIOMES] award 549931 to M.J.F.), the Czech Science Foundation (GAČR) (grant 16-15467S to O.P.), and the National Sustainability Programme (NPU) (grant LO1416 Algatech plus to O.P.).
    Keywords: Crocosphaera ; Carbon ; Cell flux model ; Daily cycle ; Iron ; Light ; Nitrogen ; Nitrogen fixation ; Oxygen ; Photosynthesis ; Temperature
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 9
    Publication Date: 2022-10-21
    Description: The critically endangered status of North Atlantic right whales (NARWs, Eubalaena glacialis) warrants the development of new, less invasive technology to monitor the health of individuals. Combined with advancements in remotely piloted aircraft systems (RPAS, commonly “drones”), infrared thermography (IRT) is being increasingly used to detect and count marine mammals and study their physiology. We conducted RPAS-based IRT over NARWs in Cape Cod Bay, Massachusetts, USA in 2017 and 2018. Observations demonstrated three particularly useful applications of RPAS-based IRT to study large whales: 1) exploring patterns of cranial heat loss and providing insight into the physiological mechanisms that produce these patterns; 2) tracking subsurface individuals in real-time (depending on the thermal stratification of the water column) using cold surface water anomalies resulting from fluke upstrokes; and 3) detecting natural changes in superficial blood circulation or diagnosing pathology based on hot anomalies on post-cranial body surfaces. These qualitative applications present a new, important opportunity to study and monitor large whales, particularly rare and at-risk species like NARWs. Despite the challenges of using this technology in aquatic environments, the applications of RPAS-based IRT for monitoring the health and behavior of endangered marine mammals, including the collection of quantitative data on thermal physiology, will continue to diversify.
    Keywords: Drone ; Cetacean ; Health ; Temperature ; Right whale
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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