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  • Artikel  (93)
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  • 1
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    Novel Curvularia species from clinical specimens (2014)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 33 no. 1, pp. 48-60
    Details
    Publikationsdatum: 2024-01-12
    Beschreibung: The fungal genus Curvularia includes numerous plant pathogens and some emerging opportunistic pathogens of humans. In a previous study we used morphology and sequences of the nuclear ribosomal internal transcribed spacer region (ITS) and the glyceraldehyde-3-phosphate dehydrogenase (gpd) gene to identify species within a set of 99 clinical Curvularia isolates from the USA. Seventy-two isolates could be identi\xef\xac\x81ed while the remaining 27 isolates belonged in three unclassi\xef\xac\x81ed clades that were tentatively labelled Curvularia sp. I, II and III. In the present study, we further assess the taxonomic placement of these isolates using sequences of ITS, gpd, the large subunit rDNA, and the second largest subunit of RNA polymerase II. DNA sequence comparisons with a set of 87 isolates representing 33 Curvularia spp. and members of the closely-related genera Bipolaris and Exserohilum revealed that Curvularia sp. I, II and III represent novel lineages in Curvularia. These lineages are morphologically different from the currently accepted species. In the phylogenetic tree, Curvularia sp. I and sp. III were each split into two distinct lineages. Morphology and phylogeny supported the proposal of \xef\xac\x81ve new species, to be named C. americana, C. chlamydospora, C. hominis, C. muehlenbeckiae and C. pseudolunata. The concatenated 4-locus phylogeny revealed the existence of six clades in Curvularia, which are associated with particular morphological features. They were named after representative species, namely americana, eragrostidis, hominis, lunata, spicifera and trifolii.
    Schlagwort(e): Bipolaris ; Curvularia ; gpd ; ITS ; LSU ; phylogeny ; RPB2 ; systematics
    Repository-Name: National Museum of Natural History, Netherlands
    Materialart: info:eu-repo/semantics/article
    Format: application/pdf
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  • 2
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    Phylogenetic circumscription of Arthrographis (Eremomycetaceae, Dothideomycetes) (2014)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 32 no. 1, pp. 102-114
    Details
    Publikationsdatum: 2024-01-12
    Beschreibung: Numerous members of Ascomycota and Basidiomycota produce only poorly differentiated arthroconidial asexual morphs in culture. These arthroconidial fungi are grouped in genera where the asexual-sexual connections and their taxonomic circumscription are poorly known. In the present study we explored the phylogenetic relationships of two of these ascomycetous genera, Arthrographis and Arthropsis. Analysis of D1/D2 sequences of all species of both genera revealed that both are polyphyletic, with species being accommodated in different orders and classes. Because genetic variability was detected among reference strains and fresh isolates resembling the genus Arthrographis, we carried out a detailed phenotypic and phylogenetic analysis based on sequence data of the ITS region, actin and chitin synthase genes. Based on these results, four new species are recognised, namely Arthrographis chlamydospora, A. curvata, A. globosa and A. longispora. Arthrographis chlamydospora is distinguished by its cerebriform colonies, branched conidiophores, cuboid arthroconidia and terminal or intercalary globose to subglobose chlamydospores. Arthrographis curvata produced both sexual and asexual morphs, and is characterised by navicular ascospores and dimorphic conidia, namely cylindrical arthroconidia and curved, cashew-nut-shaped conidia formed laterally on vegetative hyphae. Arthrographis globosa produced membranous colonies, but is mainly characterised by doliiform to globose arthroconidia. Arthrographis longispora also produces membranous colonies, but has poorly differentiated conidiophores and long arthroconidia. Morphological variants are described for A. kalrae and our results also revealed that Eremomyces langeronii and A. kalrae, traditionally considered the sexual and asexual morphs of the same species, are not conspecific.
    Schlagwort(e): Arthroconidial fungi ; Arthrographis ; Arthropsis ; Eremomyces ; phylogeny ; taxonomy
    Repository-Name: National Museum of Natural History, Netherlands
    Materialart: info:eu-repo/semantics/article
    Format: application/pdf
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  • 3
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    Array analysis using circular-wave-front geometry: an application to locate the nearby seismo-volcanic source (2011)
    Details
    Publikationsdatum: 2012-02-03
    Beschreibung: The zero-lag cross-correlation technique, used for array analysis in the hypothesis of plane waves, has been modified to allow the wave front to be circular. Synthetic tests have been performed to check the capability of the method
    Beschreibung: Published
    Beschreibung: 159-170
    Beschreibung: 3.1. Fisica dei terremoti
    Beschreibung: JCR Journal
    Beschreibung: reserved
    Schlagwort(e): Arrays ; Volcano seismology ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 4
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    DEPTH-DEPENDENT SEISMIC ATTENUATION IN THE GRANADA ZONE (SOUTHERN SPAIN) (2011)
    Seismological Society of America
    Details
    Publikationsdatum: 2017-04-04
    Beschreibung: Coda-Q estimates for the Granada Basin (Southern Spain) are obtained by analyzing earthquakes occurring within or close to the borders of this area. The data set is composed of 54 earthquakes with local magnitudes ranging between 2.2 and 4.0 and with epicentral distances to the nearest station smaller than 10 km. A single-scattering process is assumed. Coda-Q values obtained show a clear dependence on frequency according to the relationship Q = Qof", where n ranges from 0.81 to 0.89. After removing the main site effects and discussing the possible multiple-scattering influence, the lapse-time dependence is interpreted as due to attenuation variations with depth. This result agrees with the variation of coda Q obtained by using different sets of events with increasing hypocentral depth ranges.
    Beschreibung: Published
    Beschreibung: 1232-1244
    Beschreibung: 3.1. Fisica dei terremoti
    Beschreibung: JCR Journal
    Beschreibung: reserved
    Schlagwort(e): Seismic attenuation ; Coda-Q ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 5
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    Time reverse location of seismic long-period events recorded on Mt Etna (2012)
    Wiley
    Details
    Publikationsdatum: 2017-04-04
    Beschreibung: We present the first application of a time reverse location method in a volcanic setting, for a family of long-period (LP) events recorded on Mt Etna. Results are compared with locations determined using a full moment tensor grid search inversion and cross-correlation method. From 2008 June 18 to July 3, 50 broad-band seismic stations were deployed on Mt Etna, Italy, in close proximity to the summit. Two families of LP events were detected with dominant spectral peaks around 0.9 Hz. The large number of stations close to the summit allowed us to locate all events in both families using a time reversal location method. The method involves taking the seismic signal, reversing it in time, and using it as a seismic source in a numerical seismic wave simulator where the reversed signals propagate through the numerical model, interfere constructively and destructively, and focus on the original source location. The source location is the computational cell with the largest displacement magnitude at the time of maximum energy current density inside the grid. Before we located the two LP families we first applied the method to two synthetic data sets and found a good fit between the time reverse location and true synthetic location for a known velocity model. The time reverse location results of the two families show a shallow seismic region close to the summit in agreement with the locations using a moment tensor full waveform inversion method and a cross-correlation location method.
    Beschreibung: Published
    Beschreibung: 452-462
    Beschreibung: 1.4. TTC - Sorveglianza sismologica delle aree vulcaniche attive
    Beschreibung: JCR Journal
    Beschreibung: reserved
    Schlagwort(e): Volcano seismology ; Computational seismology ; Wave propagation ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 6
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    Ficus cornelisiana, a new species of Ficus subsection Urostigma (Moraceae) from the Sino-himalayan region (2014)
    In:  Blumea - Biodiversity, Evolution and Biogeography of Plants (0006-5196) vol.59 (2014) nr.1 p.6
    Details
    Publikationsdatum: 2015-03-06
    Beschreibung: A small fig tree has been misidentified as Ficus orthoneura for a long time. However, morphologically it is distinct from F. orthoneura and F. hookeriana. Typical are the ellipsoid, puberulous receptacle and caducous basal bracts. Leaf anatomy shows a multiple epidermis with the cells in the inner layer much larger than in the outer layer and thus both layers resemble an epidermis with a separate hypodermis. The abaxial cuticle is strongly sculptured, the palisade layer shows some long subdivided cells, and enlarged lithocysts are only present abaxially. Because of these differences we hereby describe it as a new species, named in honour of Cornelis (Cees) Berg: Ficus cornelisiana.
    Schlagwort(e): China ; Ficus ; Moraceae ; new species ; Vietnam
    Repository-Name: National Museum of Natural History, Netherlands
    Materialart: Article / Letter to the editor
    Format: application/pdf
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  • 7
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    MEASUREMENTS OF INTRINSIC AND SCATTERING SEISMIC ATTENUATION IN THE CRUST (2011)
    Seismological Society of America
    Details
    Publikationsdatum: 2017-04-04
    Beschreibung: Intrinsic and scattering attenuation parameters, Q~ and Qs, have been measured in three different tectonic areas for local and shallow earthquakes located close to the receiver. The approach developed by Wennerberg (1993), which takes into account the numerical correction of the coda-Q parameter for the multiple scat- tering formulation of Zeng, was used to infer from the estimates of coda Q and direct S-wave Q the intrinsic (Qi) and scattering (Qs) Q values. Results for 1 to 12 Hz range show that Q~ is comparable to Qs for the Etna volcano and for the Campi Flegrei area, while Qi for the tectonically active area of Granada is lower than Qs. Coda Q is close to intrinsic Q, suggesting that, at least in the crust, coda Q is a good estimate of the intrinsic Q. Volcanic areas show a reasonable higher degree of heterogeneity, if compared with the nonvolcanic area of Granada.
    Beschreibung: Published
    Beschreibung: 1373-1380
    Beschreibung: 3.1. Fisica dei terremoti
    Beschreibung: JCR Journal
    Beschreibung: reserved
    Schlagwort(e): Seismic scattering ; Seismic attenuation ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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  • 8
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    Lateral Changes of seismic anisotropy in the upper mantle around the Northern Apennines (2012)
    Details
    Publikationsdatum: 2017-10-19
    Beschreibung: We performed three-dimensional analysis of anisotropic parameters of body waves to develop a 3D self-consistent dynamic model of the syn-convergent extension in the Northern Apennines within the multidisciplinary project RETREAT. Simultaneous extension within the convergent margin can be the consequence of the retreat of the subducting Adriatic plate from the orogenic front, caused by sub-lithosphere mantle processes that seismic anisotropy can help to decipher. We use data recorded by the RETREAT temporary array consisting of 35 stations complemented by data of permanent INGV observatories. Currently, 18-months of data are available from some stations, representing half of the passive experiment duration. We detect many examples of core-refracted shear-wave splitting within the upper mantle, and observe both distinct lateral variations of anisotropic parameters and their dependence on the direction of propagation. In particular, the fast shear-wave polarization changes from slab-perpendicular to slab-parallel along the Apennines chain. There is also a distinct change in the anisotropic signals across the presumed boundary of the Tyrrhenian and Adriatic micro-plates. Variations of the splitting time delays and orientation of the fast shear waves, together with considerations on the geodynamics of the area, seem to exclude simple sub-lithosphere mantle corner flow as the only source of the observed anisotropy. Alternate models include (1) a frozen-in fabric of different lithosphere domains, and (2) complex mantle flow associated with the Plio-Pleisocene uplift and extension of Tuscany.
    Beschreibung: Published
    Beschreibung: Vienna
    Beschreibung: 3.3. Geodinamica e struttura dell'interno della Terra
    Beschreibung: open
    Schlagwort(e): anisotropy ; SKS shear wave splitting ; Northern Apennines ; 04. Solid Earth::04.06. Seismology::04.06.07. Tomography and anisotropy ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis ; 04. Solid Earth::04.07. Tectonophysics::04.07.02. Geodynamics ; 04. Solid Earth::04.07. Tectonophysics::04.07.06. Subduction related processes
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: Poster session
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  • 9
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    Resolving the Diplodia complex on apple and other Rosaceae hosts (2012)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi (0031-05850) vol.29 (2012) nr.1 p.29
    Details
    Publikationsdatum: 2015-04-20
    Beschreibung: Diplodia species are known as pathogens on many woody hosts, including fruit trees, worldwide. In this study a collection of Diplodia isolates obtained mostly from apple and other Rosaceae hosts were identified based on morphological characters and DNA sequence data from ITS and EF1-α loci. The results show that the diversity of species associated with twig and branch cankers and fruit rot of apples is larger than previously recognised. Four species were identified, namely D. seriata and D. malorum (which is here reinstated for isolates with D. mutila-like conidia). Diplodia intermedia sp. nov. is closely related to D. seriata, and D. bulgarica sp. nov. is morphologically and phylogenetically distinct from all Diplodia species reported from apples.
    Schlagwort(e): Apple ; black-rot ; Botryosphaeriaceae ; canker ; Diplodia ; phylogeny
    Repository-Name: National Museum of Natural History, Netherlands
    Materialart: Article / Letter to the editor
    Format: application/pdf
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  • 10
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    Time reverse location of seismic long-period events recorded on Mt Etna (2011)
    Wiley
    Details
    Publikationsdatum: 2017-04-04
    Beschreibung: We present the first application of a time reverse location method in a volcanic setting, for a family of long-period (LP) events recorded on Mt Etna. Results are compared with locations determined using a full moment tensor grid search inversion and cross-correlation method. From 2008 June 18 to July 3, 50 broad-band seismic stations were deployed on Mt Etna, Italy, in close proximity to the summit. Two families of LP events were detected with dominant spectral peaks around 0.9 Hz. The large number of stations close to the summit allowed us to locate all events in both families using a time reversal location method. The method involves taking the seismic signal, reversing it in time, and using it as a seismic source in a numerical seismic wave simulator where the reversed signals propagate through the numerical model, interfere constructively and destructively, and focus on the original source location. The source location is the computational cell with the largest displacement magnitude at the time of maximum energy current density inside the grid. Before we located the two LP families we first applied the method to two synthetic data sets and found a good fit between the time reverse location and true synthetic location for a known velocity model. The time reverse location results of the two families show a shallow seismic region close to the summit in agreement with the locations using a moment tensor full waveform inversion method and a cross-correlation location method.
    Beschreibung: In press
    Beschreibung: (11)
    Beschreibung: 1.4. TTC - Sorveglianza sismologica delle aree vulcaniche attive
    Beschreibung: JCR Journal
    Beschreibung: reserved
    Schlagwort(e): Volcano seismology ; Computational seismology ; Wave propagation ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
    Repository-Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Materialart: article
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