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  • 1
    Publication Date: 2013-01-04
    Description: Acanthamoeba myosin II (AMII) has two heavy chains ending in a 27-residue nonhelical tailpiece and two pairs of light chains. In a companion article, we show that five, and only five, serine residues can be phosphorylated both in vitro and in vivo: Ser639 in surface loop 2 of the motor...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 2
    Publication Date: 2013-01-04
    Description: It had been proposed previously that only filamentous forms of Acanthamoeba myosin II have actin-activated MgATPase activity and that this activity is inhibited by phosphorylation of up to four serine residues in a repeating sequence in the C-terminal nonhelical tailpiece of the two heavy chains. We have reinvestigated these issues...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 3
    Publication Date: 2015-12-19
    Description: The cooling power consumption in large scale superconducting systems is huge and cryogenic devices used in space applications often require an extremely long cryogen holding time. To economically maintain the device at its operating temperature and minimize the refrigeration losses, high performance of thermal isolation is essential. The radiation from warm surrounding surfaces and conducting heat leaks through supports and penetrations are the dominant heat loads to the cold mass under vacuum condition. The advanced developments in various cryogenic applications to successfully reduce the heat loads through radiation and conduction are briefly and systematically discussed and evaluated in this review paper. These include: (1) thermal Insulation for different applications (foams, perlites, glass bubbles, aerogel and MLI), (2) sophisticated low-heat-leak support (cryogenic tension straps, trolley bars and posts with dedicated thermal intercepts), and (3) novel cryogenic heat switc...
    Print ISSN: 1757-8981
    Electronic ISSN: 1757-899X
    Topics: Mechanical Engineering, Materials Science, Production Engineering, Mining and Metallurgy, Traffic Engineering, Precision Mechanics
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  • 4
    Publication Date: 2010-01-16
    Description: Soybean (Glycine max) is one of the most important crop plants for seed protein and oil content, and for its capacity to fix atmospheric nitrogen through symbioses with soil-borne microorganisms. We sequenced the 1.1-gigabase genome by a whole-genome shotgun approach and integrated it with physical and high-density genetic maps to create a chromosome-scale draft sequence assembly. We predict 46,430 protein-coding genes, 70% more than Arabidopsis and similar to the poplar genome which, like soybean, is an ancient polyploid (palaeopolyploid). About 78% of the predicted genes occur in chromosome ends, which comprise less than one-half of the genome but account for nearly all of the genetic recombination. Genome duplications occurred at approximately 59 and 13 million years ago, resulting in a highly duplicated genome with nearly 75% of the genes present in multiple copies. The two duplication events were followed by gene diversification and loss, and numerous chromosome rearrangements. An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schmutz, Jeremy -- Cannon, Steven B -- Schlueter, Jessica -- Ma, Jianxin -- Mitros, Therese -- Nelson, William -- Hyten, David L -- Song, Qijian -- Thelen, Jay J -- Cheng, Jianlin -- Xu, Dong -- Hellsten, Uffe -- May, Gregory D -- Yu, Yeisoo -- Sakurai, Tetsuya -- Umezawa, Taishi -- Bhattacharyya, Madan K -- Sandhu, Devinder -- Valliyodan, Babu -- Lindquist, Erika -- Peto, Myron -- Grant, David -- Shu, Shengqiang -- Goodstein, David -- Barry, Kerrie -- Futrell-Griggs, Montona -- Abernathy, Brian -- Du, Jianchang -- Tian, Zhixi -- Zhu, Liucun -- Gill, Navdeep -- Joshi, Trupti -- Libault, Marc -- Sethuraman, Anand -- Zhang, Xue-Cheng -- Shinozaki, Kazuo -- Nguyen, Henry T -- Wing, Rod A -- Cregan, Perry -- Specht, James -- Grimwood, Jane -- Rokhsar, Dan -- Stacey, Gary -- Shoemaker, Randy C -- Jackson, Scott A -- England -- Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉HudsonAlpha Genome Sequencing Center, 601 Genome Way, Huntsville, Alabama 35806, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20075913" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/genetics ; Breeding ; Chromosomes, Plant/genetics ; Evolution, Molecular ; Gene Duplication ; Genes, Duplicate/genetics ; Genes, Plant/genetics ; Genome, Plant/*genetics ; *Genomics ; Molecular Sequence Data ; Multigene Family/genetics ; Phylogeny ; Plant Root Nodulation/genetics ; *Polyploidy ; Quantitative Trait Loci/genetics ; Recombination, Genetic ; Repetitive Sequences, Nucleic Acid/genetics ; Soybean Oil/biosynthesis ; Soybeans/*genetics ; Synteny/genetics ; Transcription Factors/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2010-03-17
    Description: The freshwater cnidarian Hydra was first described in 1702 and has been the object of study for 300 years. Experimental studies of Hydra between 1736 and 1744 culminated in the discovery of asexual reproduction of an animal by budding, the first description of regeneration in an animal, and successful transplantation of tissue between animals. Today, Hydra is an important model for studies of axial patterning, stem cell biology and regeneration. Here we report the genome of Hydra magnipapillata and compare it to the genomes of the anthozoan Nematostella vectensis and other animals. The Hydra genome has been shaped by bursts of transposable element expansion, horizontal gene transfer, trans-splicing, and simplification of gene structure and gene content that parallel simplification of the Hydra life cycle. We also report the sequence of the genome of a novel bacterium stably associated with H. magnipapillata. Comparisons of the Hydra genome to the genomes of other animals shed light on the evolution of epithelia, contractile tissues, developmentally regulated transcription factors, the Spemann-Mangold organizer, pluripotency genes and the neuromuscular junction.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chapman, Jarrod A -- Kirkness, Ewen F -- Simakov, Oleg -- Hampson, Steven E -- Mitros, Therese -- Weinmaier, Thomas -- Rattei, Thomas -- Balasubramanian, Prakash G -- Borman, Jon -- Busam, Dana -- Disbennett, Kathryn -- Pfannkoch, Cynthia -- Sumin, Nadezhda -- Sutton, Granger G -- Viswanathan, Lakshmi Devi -- Walenz, Brian -- Goodstein, David M -- Hellsten, Uffe -- Kawashima, Takeshi -- Prochnik, Simon E -- Putnam, Nicholas H -- Shu, Shengquiang -- Blumberg, Bruce -- Dana, Catherine E -- Gee, Lydia -- Kibler, Dennis F -- Law, Lee -- Lindgens, Dirk -- Martinez, Daniel E -- Peng, Jisong -- Wigge, Philip A -- Bertulat, Bianca -- Guder, Corina -- Nakamura, Yukio -- Ozbek, Suat -- Watanabe, Hiroshi -- Khalturin, Konstantin -- Hemmrich, Georg -- Franke, Andre -- Augustin, Rene -- Fraune, Sebastian -- Hayakawa, Eisuke -- Hayakawa, Shiho -- Hirose, Mamiko -- Hwang, Jung Shan -- Ikeo, Kazuho -- Nishimiya-Fujisawa, Chiemi -- Ogura, Atshushi -- Takahashi, Toshio -- Steinmetz, Patrick R H -- Zhang, Xiaoming -- Aufschnaiter, Roland -- Eder, Marie-Kristin -- Gorny, Anne-Kathrin -- Salvenmoser, Willi -- Heimberg, Alysha M -- Wheeler, Benjamin M -- Peterson, Kevin J -- Bottger, Angelika -- Tischler, Patrick -- Wolf, Alexander -- Gojobori, Takashi -- Remington, Karin A -- Strausberg, Robert L -- Venter, J Craig -- Technau, Ulrich -- Hobmayer, Bert -- Bosch, Thomas C G -- Holstein, Thomas W -- Fujisawa, Toshitaka -- Bode, Hans R -- David, Charles N -- Rokhsar, Daniel S -- Steele, Robert E -- P 21108/Austrian Science Fund FWF/Austria -- R24 RR015088/RR/NCRR NIH HHS/ -- England -- Nature. 2010 Mar 25;464(7288):592-6. doi: 10.1038/nature08830. Epub 2010 Mar 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20228792" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Anthozoa/genetics ; Comamonadaceae/genetics ; DNA Transposable Elements/genetics ; Gene Transfer, Horizontal/genetics ; Genome/*genetics ; Genome, Bacterial/genetics ; Hydra/*genetics/microbiology/ultrastructure ; Molecular Sequence Data ; Neuromuscular Junction/ultrastructure
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2015-08-20
    Description: All around the globe, humans have greatly altered the abiotic and biotic environment with ever-increasing speed. One defining feature of the Anthropocene epoch is the erosion of biogeographical barriers by human-mediated dispersal of species into new regions, where they can naturalize and cause ecological, economic and social damage. So far, no comprehensive analysis of the global accumulation and exchange of alien plant species between continents has been performed, primarily because of a lack of data. Here we bridge this knowledge gap by using a unique global database on the occurrences of naturalized alien plant species in 481 mainland and 362 island regions. In total, 13,168 plant species, corresponding to 3.9% of the extant global vascular flora, or approximately the size of the native European flora, have become naturalized somewhere on the globe as a result of human activity. North America has accumulated the largest number of naturalized species, whereas the Pacific Islands show the fastest increase in species numbers with respect to their land area. Continents in the Northern Hemisphere have been the major donors of naturalized alien species to all other continents. Our results quantify for the first time the extent of plant naturalizations worldwide, and illustrate the urgent need for globally integrated efforts to control, manage and understand the spread of alien species.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉van Kleunen, Mark -- Dawson, Wayne -- Essl, Franz -- Pergl, Jan -- Winter, Marten -- Weber, Ewald -- Kreft, Holger -- Weigelt, Patrick -- Kartesz, John -- Nishino, Misako -- Antonova, Liubov A -- Barcelona, Julie F -- Cabezas, Francisco J -- Cardenas, Dairon -- Cardenas-Toro, Juliana -- Castano, Nicolas -- Chacon, Eduardo -- Chatelain, Cyrille -- Ebel, Aleksandr L -- Figueiredo, Estrela -- Fuentes, Nicol -- Groom, Quentin J -- Henderson, Lesley -- Inderjit -- Kupriyanov, Andrey -- Masciadri, Silvana -- Meerman, Jan -- Morozova, Olga -- Moser, Dietmar -- Nickrent, Daniel L -- Patzelt, Annette -- Pelser, Pieter B -- Baptiste, Maria P -- Poopath, Manop -- Schulze, Maria -- Seebens, Hanno -- Shu, Wen-sheng -- Thomas, Jacob -- Velayos, Mauricio -- Wieringa, Jan J -- Pysek, Petr -- England -- Nature. 2015 Sep 3;525(7567):100-3. doi: 10.1038/nature14910. Epub 2015 Aug 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Ecology, Department of Biology, University of Konstanz, Universitatsstrasse 10, D-78464 Konstanz, Germany. ; Division of Conservation, Vegetation and Landscape Ecology, University of Vienna, 1030 Wien, Austria. ; Institute of Botany, Department of Invasion Ecology, The Czech Academy of Sciences, CZ-252 43 Pruhonice, Czech Republic. ; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Deutscher Platz 5e, D-04103 Leipzig, Germany. ; Institute of Biochemistry and Biology, University of Potsdam, D-14469 Potsdam, Germany. ; Biodiversity, Macroecology &Conservation Biogeography, University of Gottingen, Busgenweg 1, D-37077 Gottingen, Germany. ; Biota of North America Program (BONAP), Chapel Hill, North Carolina 27516, USA. ; Institute for Aquatic and Ecological Problems, Far East Branch, Russian Academy of Sciences, 680000 Khabarovsk, Russia. ; School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand. ; Departamento de Biodiversidad y Conservacion, Real Jardin Botanico, CSIC, Plaza de Murillo 2, 28014 Madrid, Spain. ; Instituto Amazonico de Investigaciones Cientificas Sinchi, Herbario Amazonico Colombiano, 110311 Bogota, Colombia. ; Instituto de Investigacion de Recursos Biologicos Alexander von Humboldt, 111311 Bogota, Colombia. ; Arts Faculty, Monash University, 3145 Melbourne, Australia. ; Escuela de Biologia, Universidad de Costa Rica, 11501 San Jose, Costa Rica. ; Conservatoire et jardin botaniques de la Ville de Geneve, 1292 Geneve, Switzerland. ; Laboratory of Plant Taxonomy and Phylogeny, Tomsk State University, Lenin Prospect 36, 634050, Tomsk, Russia. ; Department of Botany, PO Box 77000, Nelson Mandela Metropolitan University, Port Elizabeth, 6031 South Africa. ; Centre for Functional Ecology, Departamento de Ciencias da Vida, Universidade de Coimbra, 3001-455 Coimbra, Portugal. ; Facultad de Ciencias Forestales, Instituto de Ecologia y Biodiversidad, Universidad de Concepcion, Victoria 631, 403000, Concepcion, Chile. ; Botanic Garden Meise, Domein van Bouchout, B-1860, Meise, Belgium. ; ARC-Plant Protection Research Institute, Pretoria 0001, South Africa. ; Department of Environmental Studies and Centre for Environmental Management Degraded of Ecosystems, University of Delhi, Delhi 110007, India. ; Institute of Human Ecology SB RAS, Pr. Leningradasky 10, 650065 Kemerovo, Russia. ; Programa de Pos-graduacion en Ecologia, UFRN, Campus Lagoa Nova, 59078-900 Natal, Brazil. ; Oceanologia y Ecologia Marina, Facultad de Ciencias, Universidad de la Republica, Igua, 4225, CP 11400, Montevideo, Uruguay. ; Belize Tropical Forest Studies, PO Box 208, Belmopan, Belize. ; Institute of Geography RAS, Staromonetny, 29, 119017 Moscow, Russia. ; Department of Plant Biology, Southern Illinois University, Carbondale, Illinois 62901-6509 USA. ; Oman Botanic Garden, Diwan of Royal Court, 122 Muscat, Oman. ; The Forest Herbarium (BKF), Department of National Parks, Wildlife and Plant Conservation, Chatuchak, Bangkok 10900, Thailand. ; Department of Biology, Martin-Luther University Halle-Wittenberg, D-06108 Halle, Germany. ; Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Carl-von-Ossietzky Strasse 9-11, D-26111 Oldenburg, Germany. ; State Key Laboratory of Biocontrol and Guangdong Key Laboratory of Plant Resources, College of Ecology and Evolution, Sun Yat-sen University, Guangzhou 510275, China. ; Department of Botany &Microbiology, College of Science, King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia. ; Naturalis Biodiversity Center (Botany section), Darwinweg 2, 2333 CR Leiden, the Netherlands. ; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands. ; Department of Ecology, Faculty of Science, Charles University in Prague, CZ-128 44 Vinicna 7, Prague 2, Czech Republic. ; Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Matieland 7602, South Africa.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26287466" target="_blank"〉PubMed〈/a〉
    Keywords: *Biodiversity ; Databases, Factual ; *Geographic Mapping ; Introduced Species/*statistics & numerical data ; North America ; Pacific Islands ; Phylogeography ; *Plants
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2007-06-16
    Description: The repetitive DNA that constitutes most of the heterochromatic regions of metazoan genomes has hindered the comprehensive analysis of gene content and other functions. We have generated a detailed computational and manual annotation of 24 megabases of heterochromatic sequence in the Release 5 Drosophila melanogaster genome sequence. The heterochromatin contains a minimum of 230 to 254 protein-coding genes, which are conserved in other Drosophilids and more diverged species, as well as 32 pseudogenes and 13 noncoding RNAs. Improved methods revealed that more than 77% of this heterochromatin sequence, including introns and intergenic regions, is composed of fragmented and nested transposable elements and other repeated DNAs. Drosophila heterochromatin contains "islands" of highly conserved genes embedded in these "oceans" of complex repeats, which may require special expression and splicing mechanisms.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2819280/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2819280/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Smith, Christopher D -- Shu, Shengqiang -- Mungall, Christopher J -- Karpen, Gary H -- P41 HG000739-15/HG/NHGRI NIH HHS/ -- R01 HG000747/HG/NHGRI NIH HHS/ -- R01 HG000747-16/HG/NHGRI NIH HHS/ -- R01-HG000747/HG/NHGRI NIH HHS/ -- U54 HG004028-01/HG/NHGRI NIH HHS/ -- New York, N.Y. -- Science. 2007 Jun 15;316(5831):1586-91.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, San Francisco State University, San Francisco, CA 94132, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17569856" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Chromosome Mapping ; Computational Biology ; Conserved Sequence ; DNA Transposable Elements ; DNA, Complementary ; Drosophila/genetics ; Drosophila Proteins/genetics ; Drosophila melanogaster/*genetics ; Exons ; Expressed Sequence Tags ; *Genes, Insect ; Genome ; Heterochromatin/*genetics ; Insects/genetics ; Introns ; Pseudogenes ; RNA, Untranslated/genetics ; Repetitive Sequences, Nucleic Acid ; Retroelements ; Sequence Analysis, DNA
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2013-04-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shu, Shu-Sen -- Jiang, Wan-Sheng -- Whitten, Tony -- Yang, Jun-Xing -- Chen, Xiao-Yong -- New York, N.Y. -- Science. 2013 Apr 19;340(6130):272. doi: 10.1126/science.340.6130.272-a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23599459" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aquatic Organisms/*physiology ; *Biodiversity ; *Caves ; China ; Climate Change ; Cyprinidae/physiology ; *Disasters ; *Droughts ; Humans
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2010-08-06
    Description: Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3130542/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3130542/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Srivastava, Mansi -- Simakov, Oleg -- Chapman, Jarrod -- Fahey, Bryony -- Gauthier, Marie E A -- Mitros, Therese -- Richards, Gemma S -- Conaco, Cecilia -- Dacre, Michael -- Hellsten, Uffe -- Larroux, Claire -- Putnam, Nicholas H -- Stanke, Mario -- Adamska, Maja -- Darling, Aaron -- Degnan, Sandie M -- Oakley, Todd H -- Plachetzki, David C -- Zhai, Yufeng -- Adamski, Marcin -- Calcino, Andrew -- Cummins, Scott F -- Goodstein, David M -- Harris, Christina -- Jackson, Daniel J -- Leys, Sally P -- Shu, Shengqiang -- Woodcroft, Ben J -- Vervoort, Michel -- Kosik, Kenneth S -- Manning, Gerard -- Degnan, Bernard M -- Rokhsar, Daniel S -- R01 HG004164/HG/NHGRI NIH HHS/ -- R01 HG004164-03/HG/NHGRI NIH HHS/ -- R01 HG004164-04/HG/NHGRI NIH HHS/ -- England -- Nature. 2010 Aug 5;466(7307):720-6. doi: 10.1038/nature09201.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Integrative Genomics and Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA. mansi@wi.mit.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20686567" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Apoptosis/genetics ; Cell Adhesion/genetics ; Cell Cycle/genetics ; Cell Polarity/genetics ; Cell Proliferation ; *Evolution, Molecular ; Genes/genetics ; Genome/*genetics ; Genomics ; Humans ; Immunity, Innate/genetics ; Models, Biological ; Neurons/metabolism ; Phosphotransferases/chemistry/genetics ; Phylogeny ; Porifera/anatomy & histology/cytology/*genetics/immunology ; Sequence Analysis, DNA ; Signal Transduction/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 10
    Publication Date: 2012-12-22
    Description: Polyploidy often confers emergent properties, such as the higher fibre productivity and quality of tetraploid cottons than diploid cottons bred for the same environments. Here we show that an abrupt five- to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1-2 Myr ago, conferred about 30-36-fold duplication of ancestral angiosperm (flowering plant) genes in elite cottons (Gossypium hirsutum and Gossypium barbadense), genetic complexity equalled only by Brassica among sequenced angiosperms. Nascent fibre evolution, before allopolyploidy, is elucidated by comparison of spinnable-fibred Gossypium herbaceum A and non-spinnable Gossypium longicalyx F genomes to one another and the outgroup D genome of non-spinnable Gossypium raimondii. The sequence of a G. hirsutum A(t)D(t) (in which 't' indicates tetraploid) cultivar reveals many non-reciprocal DNA exchanges between subgenomes that may have contributed to phenotypic innovation and/or other emergent properties such as ecological adaptation by polyploids. Most DNA-level novelty in G. hirsutum recombines alleles from the D-genome progenitor native to its New World habitat and the Old World A-genome progenitor in which spinnable fibre evolved. Coordinated expression changes in proximal groups of functionally distinct genes, including a nuclear mitochondrial DNA block, may account for clusters of cotton-fibre quantitative trait loci affecting diverse traits. Opportunities abound for dissecting emergent properties of other polyploids, particularly angiosperms, by comparison to diploid progenitors and outgroups.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Paterson, Andrew H -- Wendel, Jonathan F -- Gundlach, Heidrun -- Guo, Hui -- Jenkins, Jerry -- Jin, Dianchuan -- Llewellyn, Danny -- Showmaker, Kurtis C -- Shu, Shengqiang -- Udall, Joshua -- Yoo, Mi-jeong -- Byers, Robert -- Chen, Wei -- Doron-Faigenboim, Adi -- Duke, Mary V -- Gong, Lei -- Grimwood, Jane -- Grover, Corrinne -- Grupp, Kara -- Hu, Guanjing -- Lee, Tae-ho -- Li, Jingping -- Lin, Lifeng -- Liu, Tao -- Marler, Barry S -- Page, Justin T -- Roberts, Alison W -- Romanel, Elisson -- Sanders, William S -- Szadkowski, Emmanuel -- Tan, Xu -- Tang, Haibao -- Xu, Chunming -- Wang, Jinpeng -- Wang, Zining -- Zhang, Dong -- Zhang, Lan -- Ashrafi, Hamid -- Bedon, Frank -- Bowers, John E -- Brubaker, Curt L -- Chee, Peng W -- Das, Sayan -- Gingle, Alan R -- Haigler, Candace H -- Harker, David -- Hoffmann, Lucia V -- Hovav, Ran -- Jones, Donald C -- Lemke, Cornelia -- Mansoor, Shahid -- ur Rahman, Mehboob -- Rainville, Lisa N -- Rambani, Aditi -- Reddy, Umesh K -- Rong, Jun-kang -- Saranga, Yehoshua -- Scheffler, Brian E -- Scheffler, Jodi A -- Stelly, David M -- Triplett, Barbara A -- Van Deynze, Allen -- Vaslin, Maite F S -- Waghmare, Vijay N -- Walford, Sally A -- Wright, Robert J -- Zaki, Essam A -- Zhang, Tianzhen -- Dennis, Elizabeth S -- Mayer, Klaus F X -- Peterson, Daniel G -- Rokhsar, Daniel S -- Wang, Xiyin -- Schmutz, Jeremy -- England -- Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23257886" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; *Biological Evolution ; Cacao/genetics ; Chromosomes, Plant/genetics ; *Cotton Fiber ; Diploidy ; Gene Duplication/genetics ; Genes, Plant/genetics ; Genome, Plant/*genetics ; Gossypium/classification/*genetics ; Molecular Sequence Annotation ; Phylogeny ; *Polyploidy ; Vitis/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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