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  • 1
    Keywords: Biomedical engineering ; Chemistry ; Chemistry, Physical organic ; Physics ; Plasma (Ionized gases) ; Statistical physics
    ISBN: 9783540736172
    Language: English
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  • 2
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 116 (1994), S. 1490-1501 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 112 (1990), S. 5066-5074 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 110 (1988), S. 6992-7000 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 87 (1987), S. 6070-6077 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Glassy structures of water were generated by rapidly quenching configurations of 64 and 343 molecules of liquid water. The potential energy was then expanded through quadratic order around local minima generated this way and properties of the resulting harmonic system were calculated. The results were used to test the extent to which the structure of liquid water is similar to that of a harmonic aqueous glass. The radial distribution functions for the glass are remarkably similar to those of the liquid. The vibrational density of states for the glassy water exhibits a gap between 300 and 400 cm−1. The normal modes below 300 cm−1 correspond to molecular translations while the modes above 400 cm−1 are ascribed to molecular librations. Translational modes are almost entirely responsible for the broadening of oxygen–oxygen radial distribution function of the quenched configuration. They are also primarily responsible for the broadening of other radial distribution functions. Vibrational density of states leads to classical and quantum free energies for the harmonic system equal −9.62±0.12 and −8.89±0.12 kcal/mol, respectively, at T=300 K. Both free energies were found to be insensitive to sample size and to the configurational differences between the quenched structures.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 88 (1988), S. 3281-3285 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The surface potential of the water liquid–vapor interface is studied by molecular dynamics using the TIP4P model. The surface potential predicted by this empirical model is −(130±50)mV. This value for the surface potential is of reasonable magnitude but of opposite sign to the expectations derived from laboratory experiments. The electrostatic potential displays a nonmonotonic variation with depth into the liquid. This nonmonotonic variation is explained on the basis of the nondipolar charge distribution of the H2O molecule and the observation that the more probable molecular orientations in the interfacial region place the molecular symmetry axis near the plane of the interface. It is shown that minor changes in the assumed molecular charge distribution can bring the computed surface potential into agreement with experimental expectations without qualitatively altering the nonmonotonic variation of the electrostatic potential through the interfacial region. Computed quantum mechanical descriptions of the electron distribution of the isolated H2O molecule are not compatible with the surface structure predicted by the TIP4P model and the experimental expectation that the surface potential of the water liquid–vapor interface is small, roughly of the order of 10–100 mV. The surface potential is sensitive to details in the large distance wings of the molecular electron distribution. It is hypothesized that the surface environment qualitatively alters the wings of the distribution from the result obtained by a superposition of the isolated molecule electron densities.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 90 (1989), S. 5211-5213 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: This comment on the article by Matsumoto and Kataoka [J. Chem. Phys. 88, 3233 (1988)] identifies a discrepancy between recent calculations of the surface potential of the water liquid–vapor interface. The cited work assumes that the field of a water molecule in the interfacial region is strictly the field of a point molecular dipole, whereas other works have made more detailed assumptions about the molecular charge distributions. The difference between the values for the surface potential obtained from these different assumptions is large compared to the surface potential value in question. It is shown that the numerical difference is associated with the densities of molecular quadrupole moment in the coexisting bulk phases. The correction can be evaluated analytically and applied to the molecular dynamics results after the fact.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 83 (1985), S. 5832-5836 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: The autocorrelation function of the velocity of an infinitely dilute Na+ ion in aqueous solution, and the autocorrelation function of the force exerted on a stationary Na+ under the same conditions are evaluated by molecular dynamics calculations. The results are used to test the accuracy of Brownian motion assumptions which are basic to hydrodynamic models of ion dynamics in solution. The self-diffusion coefficient of the Na+ ion predicted by Brownian motion theory is (0.65±0.1)×10−5cm2/s. This value is about 60% greater than the one obtained for the proper dynamics of the finite mass ion, (0.4±0.1)×10−5cm2/s. The numerically correct velocity autocorrelation function is nonexponential, and the autocorrelation of the force on the stationary ion does not decay faster than the ion velocity autocorrelation function. Motivated by previous hydrodynamic modeling of friction kernels, we examine the approximation in which the memory function for the velocity autocorrelation function is identified with the autocorrelation function of the force on the stationary ion. The overall agreement between this approximation for the velocity autocorrelation function and the numerically correct answer is quite good.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 100 (1994), S. 6500-6507 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: A model potential for the scattering of Ne off liquid glycerol is developed. The model is based on a nine-site description of glycerol which takes into account torsional flexibility and hydrogen bonding. This model is used to carry out molecular dynamics calculations of the scattering as a function of collision energy. The results for the sticking probability and energy transfer are in good agreement with experiments. The model predicts a wide angular distribution of the scattered atoms with a mild decrease in the energy transfer as a function of exit angle for a fixed incident angle. The model also provides insight into the importance of the corrugated nature of the surface and the types of liquid modes that play a major role in the energy transfer process.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    College Park, Md. : American Institute of Physics (AIP)
    The Journal of Chemical Physics 94 (1991), S. 5599-5605 
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: Molecular dynamics results are presented for phenol at the water liquid–vapor interface at 300 K. The calculated excess free energy of phenol at the interface is −2.8±0.4 kcal/mol, in good agreement with the recent experimental results of Eisenthal and co-workers. The most probable orientation of the phenol molecule at the surface is such that the aromatic ring is perpendicular to the interface and the OH group is fully immersed in water. The hydroxyl substituent has a preferred orientation which is similar to the orientation of OH bonds of water at the pure water liquid–vapor interface. The transition between interfacial and bulk-like behavior of phenol is abrupt and occurs when the center of mass of the solute is located about 6 A(ring) from the Gibbs surface of water. In this region the para carbon atom of the hydrophobic benzene ring can reach the interface and become partially dehydrated. This result suggests that the width of the interfacial region in which the behavior of a simple amphiphilic solute in water is influenced by the presence of the surface depends primarily on the size of its hydrophobic part. The role of the OH substituent was investigated by comparing phenol at the interface with two model systems: benzene with and without partial charges on carbon and hydrogen atoms. It is shown that in the absence of the hydrophilic substituent the solute is located further away from the liquid phase and is more likely to be oriented parallel to the interface. However, when the center of mass of the solute is moved into the interfacial region where the density of water approaches that of the bulk solvent, all three molecules become oriented perpendicularly to the surface. In this orientation the work of cavity formation needed to accommodate the hydrophobic ring in aqueous solvent is minimized.
    Type of Medium: Electronic Resource
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