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  • 1
    Publication Date: 2023-05-12
    Keywords: Date; LATITUDE; LONGITUDE; Mediterranean Sea Acidification in a Changing Climate; MedSeA; pH; pH meter YSI (556 MPS); Site
    Type: Dataset
    Format: text/tab-separated-values, 162 data points
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  • 2
    Publication Date: 2023-05-12
    Keywords: Achnanthes sp.; Amphora sp.; Bacillaria sp.; Bleakeleya sp.; Cocconeis sp.; Cyclophora sp.; Diatoms, pennales; Entomoneis sp.; Epifluorescence microscopy; Evenness of species; Grammatophora sp.; LATITUDE; Licmophora sp.; LONGITUDE; Mastogloia sp.; Mediterranean Sea Acidification in a Changing Climate; MedSeA; Navicula sp.; Neosynedra sp.; Nitzschia sp.; Proschkinia sp.; Psammodictyon sp.; Replicates; Rhabdonema sp.; Rhopalodia sp.; see reference(s); Shannon Diversity Index; Simpson index of diversity; Site; Striatella sp.; Synedra sp.; Toxarium sp.
    Type: Dataset
    Format: text/tab-separated-values, 105 data points
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  • 3
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    PANGAEA
    In:  Supplement to: Johnson, Vivienne R; Brownlee, Colin; Rickaby, Rosalind E M; Graziano, M; Milazzo, Marco; Hall-Spencer, Jason M (2013): Responses of marine benthic microalgae to elevated CO2. Marine Biology, 160(8), 1813-1824, https://doi.org/10.1007/s00227-011-1840-2
    Publication Date: 2023-05-12
    Description: Increasing anthropogenic CO2 emissions to the atmosphere are causing a rise in pCO2 concentrations in the ocean surface and lowering pH. To predict the effects of these changes, we need to improve our understanding of the responses of marine primary producers since these drive biogeochemical cycles and profoundly affect the structure and function of benthic habitats. The effects of increasing CO2 levels on the colonisation of artificial substrata by microalgal assemblages (periphyton) were examined across a CO2 gradient off the volcanic island of Vulcano (NE Sicily). We show that periphyton communities altered significantly as CO2 concentrations increased. CO2 enrichment caused significant increases in chlorophyll a concentrations and in diatom abundance although we did not detect any changes in cyanobacteria. SEM analysis revealed major shifts in diatom assemblage composition as CO2 levels increased. The responses of benthic microalgae to rising anthropogenic CO2 emissions are likely to have significant ecological ramifications for coastal systems.
    Keywords: Mediterranean Sea Acidification in a Changing Climate; MedSeA
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 4
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    PANGAEA
    In:  Supplement to: Mackinder, Luke C M; Wheeler, Glen; Schroeder, Declan C; von Dassow, Peter; Riebesell, Ulf; Brownlee, Colin (2011): Expression of biomineralization-related ion transport genes in Emiliania huxleyi. Environmental Microbiology, 13(12), 3250-3265, https://doi.org/10.1111/j.1462-2920.2011.02561.x
    Publication Date: 2023-09-02
    Description: Biomineralization in the marine phytoplankton Emiliania huxleyi is a stringently controlled intracellular process. The molecular basis of coccolith production is still relatively unknown although its importance in global biogeochemical cycles and varying sensitivity to increased pCO2 levels has been well documented. This study looks into the role of several candidate Ca2+, H+ and inorganic carbon transport genes in E. huxleyi, using quantitative reverse transcriptase PCR. Differential gene expression analysis was investigated in two isogenic pairs of calcifying and non-calcifying strains of E. huxleyi and cultures grown at various Ca2+ concentrations to alter calcite production. We show that calcification correlated to the consistent upregulation of a putative HCO3- transporter belonging to the solute carrier 4 (SLC4) family, a Ca2+/H+ exchanger belonging to the CAX family of exchangers and a vacuolar H+-ATPase. We also show that the coccolith-associated protein, GPA is downregulated in calcifying cells. The data provide strong evidence that these genes play key roles in E. huxleyi biomineralization. Based on the gene expression data and the current literature a working model for biomineralization-related ion transport in coccolithophores is presented.
    Keywords: BIOACID; Biological Impacts of Ocean Acidification
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 5
    Publication Date: 2024-03-15
    Keywords: Alkalinity, total; Aragonite saturation state; AS-Alk 2 Total Alkalinity Titrator (Apollo SciTech Inc, Georgia, USA); Benthos; Bicarbonate ion; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; CO2 vent; Coast and continental shelf; Community composition and diversity; Cyanobacteria; Diatoms; Entire community; Epifluorescence microscopy; EPOCA; EUR-OCEANS; European network of excellence for Ocean Ecosystems Analysis; European Project on Ocean Acidification; Evenness of species; Field observation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); LATITUDE; LONGITUDE; Mediterranean Sea; Mediterranean Sea Acidification in a Changing Climate; MedSeA; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH meter YSI (556 MPS); Quadrichroic equation of Ritchie (2008); Replicates; Rocky-shore community; Salinity; see reference(s); Shannon Diversity Index; Simpson index of diversity; Site; Temperate; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 1104 data points
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  • 6
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    PANGAEA
    In:  Supplement to: Johnson, Vivienne R; Russell, Bayden D; Fabricius, Katharina Elisabeth; Brownlee, Colin; Hall-Spencer, Jason M (2012): Temperate and tropical brown macroalgae thrive, despite decalcification, along natural CO2 gradients. Global Change Biology, 18(9), 2792-2803, https://doi.org/10.1111/j.1365-2486.2012.02716.x
    Publication Date: 2024-03-15
    Description: Predicting the impacts of ocean acidification on coastal ecosystems requires an understanding of the effects on macroalgae and their grazers, as these underpin the ecology of rocky shores. Whilst calcified coralline algae (Rhodophyta) appear to be especially vulnerable to ocean acidification, there is a lack of information concerning calcified brown algae (Phaeophyta), which are not obligate calcifiers but are still important producers of calcium carbonate and organic matter in shallow coastal waters. Here, we compare ecological shifts in subtidal rocky shore systems along CO2 gradients created by volcanic seeps in the Mediterranean and Papua New Guinea, focussing on abundant macroalgae and grazing sea urchins. In both the temperate and tropical systems the abundances of grazing sea urchins declined dramatically along CO2 gradients. Temperate and tropical species of the calcifying macroalgal genus Padina (Dictyoaceae, Phaeophyta) showed reductions in CaCO3 content with CO2 enrichment. In contrast to other studies of calcified macroalgae, however, we observed an increase in the abundance of Padina spp. in acidified conditions. Reduced sea urchin grazing pressure and significant increases in photosynthetic rates may explain the unexpected success of decalcified Padina spp. at elevated levels of CO2. This is the first study to provide a comparison of ecological changes along CO2 gradients between temperate and tropical rocky shores. The similarities we found in the responses of Padina spp. and sea urchin abundance at several vent systems increases confidence in predictions of the ecological impacts of ocean acidification over a large geographical range.
    Keywords: Abundance; Aeolian_Island_Vulcano; Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Biomass/Abundance/Elemental composition; Calcification/Dissolution; Calcite saturation state; Calcium carbonate; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; Chlorophyll c per cell; Chromista; CO2 vent; Coast and continental shelf; Coverage; Echinodermata; Electron transport rate, relative; Event label; Field observation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Identification; In situ sampler; ISS; Length; Macroalgae; Maximal electron transport rate, relative; Maximum photochemical quantum yield of photosystem II; Mediterranean Sea; Mediterranean Sea Acidification in a Changing Climate; MedSeA; OA-ICC; Ocean Acidification International Coordination Centre; Ochrophyta; Padina pavonica; Padina sp.; Papua_New_Guinea; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Potentiometric; Potentiometric titration; Primary production/Photosynthesis; Replicate; Salinity; Single species; South Pacific; Species; Station label; Temperate; Temperature, water; Tropical; Width
    Type: Dataset
    Format: text/tab-separated-values, 28736 data points
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  • 7
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    PANGAEA
    In:  Supplement to: Barcelos e Ramos, Joana; Schulz, Kai Georg; Brownlee, Colin; Sett, Scarlett; Azevedo, Eduardo Brito (2014): Effects of Increasing Seawater Carbon Dioxide Concentrations on Chain Formation of the Diatom Asterionellopsis glacialis. PLoS ONE, 9(3), e90749, https://doi.org/10.1371/journal.pone.0090749
    Publication Date: 2024-03-15
    Description: Diatoms can occur as single cells or as chain-forming aggregates. These two strategies affect buoyancy, predator evasion, light absorption and nutrient uptake. Adjacent cells in chains establish connections through various processes that determine strength and flexibility of the bonds, and at distinct cellular locations defining colony structure. Chain length has been found to vary with temperature and nutrient availability as well as being positively correlated with growth rate. However, the potential effect of enhanced carbon dioxide (CO2) concentrations and consequent changes in seawater carbonate chemistry on chain formation is virtually unknown. Here we report on experiments with semi-continuous cultures of the freshly isolated diatom Asterionellopsis glacialis grown under increasing CO2 levels ranging from 320 to 3400 µatm. We show that the number of cells comprising a chain, and therefore chain length, increases with rising CO2 concentrations. We also demonstrate that while cell division rate changes with CO2 concentrations, carbon, nitrogen and phosphorus cellular quotas vary proportionally, evident by unchanged organic matter ratios. Finally, beyond the optimum CO2 concentration for growth, carbon allocation changes from cellular storage to increased exudation of dissolved organic carbon. The observed structural adjustment in colony size could enable growth at high CO2 levels, since longer, spiral-shaped chains are likely to create microclimates with higher pH during the light period. Moreover increased chain length of Asterionellopsis glacialis may influence buoyancy and, consequently, affect competitive fitness as well as sinking rates. This would potentially impact the delicate balance between the microbial loop and export of organic matter, with consequences for atmospheric carbon dioxide.
    Keywords: Alkalinity, total; Aragonite saturation state; Asterionellopsis glacialis; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, organic, dissolved exudation, per cell; Carbon/Nitrogen ratio; Carbon/Phosphorus ratio; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chromista; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Growth rate; Laboratory experiment; Nitrogen/Phosphorus ratio; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Ochrophyta; Open ocean; Other metabolic rates; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Particulate organic carbon, per cell; Particulate organic carbon production per cell; Particulate organic nitrogen per cell; Particulate organic phosphorus per cell; Particulate organic phosphorus production per cell; Pelagos; Percentage; pH; Phytoplankton; Potentiometric; Potentiometric titration; Production of particulate organic nitrogen; Salinity; Single species; Species; Temperate; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 616 data points
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  • 8
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Cell expansion is a central process in plant morphogenesis, and the elongation of roots and root hairs is essential for uptake of minerals and water from the soil. Ca2+ influx from the extracellular store is required for (and sets the rates of) cell elongation in roots. ...
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Physiologia plantarum 100 (1997), S. 0 
    ISSN: 1399-3054
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Ca2+ is a ubiquitous second messenger in plant cell signalling. In this review we consider the role of Ca2+-based signal transduction in stomatal guard cells focusing on three important areas: (1) the regulation of guard cell turgor relations and the control of gene expression in guard cells, (2) the control of specificity in Ca2+ signalling, (3) emerging technologies and new approaches for studying intracellular signalling. Stomatal apertures alter in response to a wide array of environmental stimuli as a result of changes in guard cell turgor. For example, the plant hormone abscisic acid (ABA) stimulates a reduction in stomatal aperture through a decrease in guard cell turgor. Furthermore, guard cells have been shown to be competent to relay an ABA signal from its site of perception to the nucleus. An increase in the concentration of cytosolic free Ca2+ ([Ca2+]1) is central to the mechanisms underlying ABA-induced changes in guard cell turgor. We describe a possible model of Ca2+-based ABA signal transduction during stomatal closure and discuss recent evidence which suggests that Ca2+ is also involved in ABA nuclear signal transduction. Many other environmental stimuli which affect stomatal apertures, in addition to ABA, induce an increase in guard cell [Ca2+]1) This raises questions regarding how increases in [Ca2+]1) can be a common component in the signal transduction pathways by which stimuli cause both stomatal opening and closure. We discuss several mechanisms of increasing the amount of information contained within the Ca2+ signal, including encoding information in a stimulus-specific Ca2+ signal or Ca2+ signature', the concept of the ‘physiological address’ of the cell, and the use of other second messengers. We conclude by addressing the emerging technologies and new approaches which can be used in conjunction with guard cells to dissect further the molecular mechanisms of Ca2+-mediated signalling in plants.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Plant, cell & environment 6 (1983), S. 0 
    ISSN: 1365-3040
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract. Two strains of Dunaliella, both grown at 25°C were analysed for their α-amino acid and neutral soluble carbohydrate content. Glycerol was found as a major cell constituent in both varieties; the amount was roughly proportional to the outside NaCI concentration between 0.5 and 3 kmol m−3, and varied from 3.4% to 45% of the total dry weight of packed cells. The sum of sugars and α-amino acids did not amount to more than 2% of the total dry weight at any NaCI concentration.
    Type of Medium: Electronic Resource
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