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  • 1
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    PANGAEA
    In:  Supplement to: Moya, Aurélie; Huisman, L; Forêt, S; Gattuso, Jean-Pierre; Hayward, D C; Ball, E E; Miller, David J (2015): Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes. Molecular Ecology, 24(2), 438-452, https://doi.org/10.1111/mec.13021
    Publication Date: 2024-03-15
    Description: Corals play a key role in ocean ecosystems and carbonate balance, but their molecular response to ocean acidification remains unclear. The only previous whole-transcriptome study documented extensive disruption of gene expression, particularly of genes encoding skeletal organic matrix proteins, in juvenile corals (Acropora millepora) after short-term (3 d) exposure to elevated pCO2. In this study, whole-transcriptome analysis was used to compare the effects of such 'acute' (3 d) exposure to elevated pCO2 with a longer ('prolonged'; 9 d) period of exposure beginning immediately post-fertilization. Far fewer genes were differentially expressed under the 9-d treatment, and although the transcriptome data implied wholesale disruption of metabolism and calcification genes in the acute treatment experiment, expression of most genes was at control levels after prolonged treatment. There was little overlap between the genes responding to the acute and prolonged treatments, but heat shock proteins (HSPs) and heat shock factors (HSFs) were over-represented amongst the genes responding to both treatments. Amongst these was an HSP70 gene previously shown to be involved in acclimation to thermal stress in a field population of another acroporid coral. The most obvious feature of the molecular response in the 9-d treatment experiment was the upregulation of five distinct Bcl-2 family members, the majority predicted to be anti-apoptotic. This suggests that an important component of the longer term response to elevated CO2 is suppression of apoptosis. It therefore appears that juvenile A. millepora have the capacity to rapidly acclimate to elevated pCO2, a process mediated by upregulation of specific HSPs and a suite of Bcl-2 family members.
    Keywords: Acropora millepora; Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Benthos; Bicarbonate ion; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Family; Figure; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Gene abundance; Gene expression (incl. proteomics); Group; Laboratory experiment; Number of sequences; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Percentage; pH; pH, standard deviation; Potentiometric; Salinity; Single species; South Pacific; Species; Temperature, water; Temperature, water, standard deviation; Treatment; Tropical
    Type: Dataset
    Format: text/tab-separated-values, 568 data points
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  • 2
    ISSN: 1432-041X
    Keywords: Key words RXR ; Ultraspiracle ; Usp ; Ecdysone receptor ; Locusta migratoria ; Nuclear receptor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  The cellular response to steroid hormones is mediated by nuclear receptors which act by regulating transcription. In Drosophila melanogaster, the receptor for the insect molting hormone, 20-hydroxyecdysone, is a heterodimer composed of the Ecdysone Receptor and Ultraspiracle (USP) proteins. The DNA binding domains of arthropod USPs and their vertebrate homologs, the retinoid X receptor (RXR) family, are highly conserved. The ligand binding domain sequences, however, divide into two distinct groups. One group consists of sequences from members of the holometabolous higher insect orders Diptera and Lepidoptera, the other of sequences from vertebrates, a crab and a tick. We here report the sequence of an RXR/USP from the hemimetabolous orthopteran, Locusta migratoria. The locust RXR/USP ligand binding domain clearly falls in the vertebrate-crab-tick rather than the dipteran-lepidopteran group. The reason for the evolutionarily abrupt divergence of the dipteran and lepidopteran sequences is unknown, but it could be a change in the type of ligand bound or the loss of ligand altogether.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 0931-1890
    Keywords: Key words Altitude ; Carbon isotope ratio ; Clusiaceae ; Crassulacean acid metabolism ; Deuterium
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
    Notes: Abstract  Samples of the Clusiaceae genera Clusia, Oedematopus and Dystovomita were collected at various sites and different altitudes in northern and south-western Venezuela. Analyses of stable isotopes of carbon and hydrogen and of leaf-nitrogen levels were performed on the dried samples. Correlations among these variables, i. e. carbon isotope discrimination (Δ), hydrogen isotope ratio (δD) and N-levels, and with altitude were assessed. In the samples, where values of Δ above 15 ‰ indicate predominant performance of C3 photosynthesis, there were slight tendencies of increasing Δ, δD and N-levels with increasing altitude and of increasing Δ with increasing N. Although these correlations taken separately were not statistically significant, they support each other and indicate increasing transpiration and increased leaf-nutrient supply at increasing altitude. Performance of crassulacean acid metabolism (CAM) in species of Clusia appears to be restricted to altitudes below 1500 m a. s. l. There was a significant negative correlation of Δ with altitude in the samples, where values of Δ below 10 ‰ indicated predominant performance of CAM. This suggests that phases II and IV of CAM are progressively suppressed towards the upper altitudinal limit of CAM in Clusia in northern Venezuela. It is concluded that among the large number of environmental factors and combinations thereof, which determine the expression of CAM in Clusia and trigger C3-CAM transitions in C3/CAM intermediate species, low availability of water is the most important.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Archives of Biochemistry and Biophysics 73 (1958), S. 410-419 
    ISSN: 0003-9861
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Biology , Chemistry and Pharmacology , Physics
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 209 (1966), S. 1217-1218 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] HAEMOGLOBIN A2 has been shown to have the same a-chains as haemoglobin A, but to differ from it in the non-a-chains, which are named β in A and δ in A2 (refs. 1-5). Two variants of haemoglobin A2 (a2δ2) have been described where the difference in chemical structuie rests in the δ- rather than in ...
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 207 (1965), S. 1305-1305 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] Harwin and Paterson3 found that in rats with allergic encephalomyelitis, complement-fixing activity of the serum was associated with 19$ globulins and was destroyed by treatment with 2-mercaptoethanol. Serum with high ocomplement-fixing activity when passively administered showed suppressive ...
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Freshwater biology 8 (1978), S. 0 
    ISSN: 1365-2427
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: SUMMARY. Lake Wisdom is of interest because it is large and deep, has oxygen throughout, and yet, apparently as a result of its recent formation, its biota has some surprising lacunae. It is nearly circular and fills the central caldera of Long Island, Papua New Guinea (5° 20′ S, 147° 6′ E). Its maximum length is 13.4 km, and area approximately 95 km2. A bathymetric map of the lake to depths of 300 m has been constructed from fathometer transects. Repeated soundings in the deeper parts gave depths of about 360 m. The surface of the lake is approximately 190 m above sea-level and water samples from the deepest part of the lake are fresh, so the basin is apparently sealed. The lake level shows annual fluctuations of c. 1.0 m.Limnological information has been collected during seven visits to Lake Wisdom over the period 1969–76. The surface temperature of the lake was constant at 28°C throughout this period and the temperature falls very gradually to 26–27°C at 60 m, except for a relatively rapid drop of approximately 1°C from 10 to 20 m. One of the most unusual features is the relatively high oxygen concentration in the deepest parts of the lake. Living chironomid larvae and molluscs were collected from the bottom in depths of 360 m. Light penetration in the lake varies greatly depending on the amount of rainfall and the volcanic activity of Motmot, a secondary cone within the lake.The biota of Lake Wisdom is rather simple. There is a low standing crop of phytoplankton. Benthic algae are abundant and diverse although they cover only a limited area because of the depth of the lake. There are no vascular aquatic plants. The pelagic fauna consists of two species of Cladocera and one species of notonectid. There is one species of sponge, four species of molluscs, and a small number of species of aquatic insects including Hemiptera. Odonata, and the larvae of chironomids, mayflies, a caddisfly, and a pyralid moth. Water birds, including ducks, grebes and waders, are fairly numerous. The lake also contains one or more crocodiles.
    Type of Medium: Electronic Resource
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  • 8
    ISSN: 1365-2427
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: SUMMARY. Lake Dakataua (5°S, 150°E) is a large freshwater lake which fills the caldera at the tip of the Willaumez Peninsula on West New Britain, Papua New Guinea. A peninsula produced by post-collapse volcanic activity divides the lake into two basins connected by a narrow channel. The surface of the lake is c. 76 m above sea level, the surface area is 48 km2, and the maximum depth c. 120 m (Lowder & Carmichael, 1970). A bathymetric map of the lake has been constructed from fathometer transects.In October-November, 1974, the lake was alkaline throughout with surface pH 7.6–8.2; acidity increased with depth to pH 7.1–7.5. Surface temperatures were 30.8–31.9°C. There were thermoclines at 22 m and at 40–45 m. Minimum temperature recorded was 26.8°C (at 80 m). Oxygen saturation curves were similar to the temperature curves with sharp gradients at 22 m and 40–45 m. There was no measurable O2 from 80 m downward. Living organisms were common in dredge hauls to 20 m but were not found in those from greater depths. Carbon dioxide concentration rose steadily from 1.4 mg I−1 at the surface to 19.6 mg I−1 at 80 m. Average Secchi disc transparency was 11.1 m.Shallow water areas support dense beds of mixed aquatic plants (Najas tenuifolia and Chara sp.). Invertebrates collected included two species of sponge, a rotifer, an ostracod, six species of molluscs, seven species of Cladocera, a copepod, eight species of Hemiptera, two species of Trichoptera, ten species of Odonata, two species of Coleoptera, and seven species of Chironomidae. Vertebrates included frogs (two species) and crocodiles. Water birds, including ducks, grebes, and waders, were abundant. The biota of L. Dakataua is more diverse than that of nearby Lake Wisdom probably due to the combination of greater age and greater proximity to sources of colonists. Most species found in L. Wisdom are also found in L. Dakataua.
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    Palo Alto, Calif. : Annual Reviews
    Annual Review of Biochemistry 11 (1942), S. 1-25 
    ISSN: 0066-4154
    Source: Annual Reviews Electronic Back Volume Collection 1932-2001ff
    Topics: Chemistry and Pharmacology , Biology
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Oxford, UK and Boston, USA : Blackwell Publishers Ltd
    Expert systems 18 (2001), S. 0 
    ISSN: 1468-0394
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Computer Science
    Notes: The paper describes a knowledge-based system for modelling trust in the certification authority (CA) of a public key infrastructure. It was built using a graphical knowledge-based system toolkit, Istar, that allows the knowledge builder to easily model the important relationships between concepts of the domain. The knowledge base was initially built using published work and was subsequently extended by knowledge obtained from leading public key infrastructure experts. The first prototype system computes the trust in a CA by asking the user a series of questions about the CA's Certification Practice Statement. Examples of its use with two well-known public CAs is discussed.An important issue raised and discussed in this paper is how to map symbols in the knowledge base to the knowledge level of human trust and beliefs, for such an ill-defined area of knowledge as trust, and four main mappings have been identified. Another issue that emerged relates to the use of questionnaires during knowledge acquisition. The expert system is currently available online via the Istar knowledge server, and future work is discussed.
    Type of Medium: Electronic Resource
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