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  • 1
    Keywords: Plant diseases. ; Plant genetics. ; Agriculture. ; Plant Pathology. ; Plant Genetics. ; Agriculture.
    Description / Table of Contents: Part I: Mutation Induction -- Chapter 1. Physical mutagenesis and population development in Musa spp -- Chapter 2. Gamma irradiation of embryogenic cell suspension cultures from Cavendish banana (Musa spp. AAA group) and in vitro selection for resistance to Fusarium wilt -- Part II: Fusarium TR4 Screening Technologies -- Chapter 3. Pre-screening of banana genotypes for Fusarium wilt resistance by using an in vitro bioassay -- Chapter 4. In vitro based mass-screening techniques for early selection of banana mutants resistant to Fusarium wilt -- Chapter 5. An optimised greenhouse protocol for screening banana plants for Fusarium wilt resistance -- Chapter 6. Lab-based screening using hydroponic system for the rapid detection of Fusarium wilt TR4 tolerance/resistance of banana -- Chapter 7. Field screening of gamma-irradiated Cavendish bananas -- Part III: Mutation Detection using Genomics Tools -- Chapter 8. Mutation detection using Low Coverage Copy Number Variation -- Chapter 9. A protocol for detection of large chromosome variations in banana using Next Generation Sequencing -- Part IV: Low-cost in vitro Methods for Banana Micropropagation -- Chapter 10. Low-cost in vitro methods for generation advancement in banana mutation breeding -- Chapter 11. A protocol for mass propagation of plants using a low-cost bioreactor.
    Abstract: Bananas are a staple food for over 500 million people and are also an important cash crop. Fusarium wilt, caused by the fungus Fusarium oxysporum f.sp. cubense, is one of the most destructive diseases of banana globally. Since the 1990s, an aggressive variant of this fungus, called Tropical Race 4 (TR4), severely affected banana plantations in Southeast Asia from where it spread to other continents, including Latin America, where the global banana export market is primarily centred. TR4 is a soil borne pathogen making the disease difficult to contain. The Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture implemented a Coordinated Research Project (CRP) ‘Efficient Screening Techniques to Identify Mutants with Disease Resistance for Coffee and Banana” (2015-2020). This CRP brought together experts from Asia, Europe and Africa in addition to experts of the Joint FAO/IAEA Centre to develop resistance against TR4 through mutation-assisted breeding. Induced mutagenesis is particularly attractive in case of banana since most cultivated bananas are seedless, thus hampering conventional cross breeding. This Open Access book is a compilation of the protocols developed under the CRP specifically for TR4. The first part covers methods for mutation induction, including the integrated use of innovative single-cell culture with mutagenesis techniques. The book also describes up-to-date phenotypic screening methods for TR4 resistance in banana under field-, greenhouse- and laboratory conditions. Finally, molecular and bioinformatics tools for genome-wide mutation discovery following Next Generation Sequencing are also described. Given the imminent threat of Fusarium Wilt TR4 on banana production globally, it is our hope and intention that the book will serve as a timely reference and guide for banana breeders and pathologists worldwide who are committed to the genetic improvement of banana for Fusarium wilt resistance.
    Type of Medium: Online Resource
    Pages: XVI, 187 p. 1 illus. , online resource.
    Edition: 1st ed. 2022.
    ISBN: 9783662649152
    DDC: 571.92
    Language: English
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  • 2
    Keywords: Plant diseases. ; Plant genetics. ; Agriculture. ; Botany. ; Plant Pathology. ; Plant Genetics. ; Agriculture. ; Plant Science.
    Description / Table of Contents: Introduction coffee breeding and challenges -- Choice of materials for mutation induction in arabica coffee -- Improved in-vitro establishment and germination of Coffea arabica seed -- Induced mutagenesis in coffee (Coffea arabica L.) using chemical agents -- Mutation induction using gamma irradiation and high frequency embryogenic callus from coffee (Coffea arabica) -- Chemical mutagenesis of Coffea arabica mature seed using EMS -- Physical mutagenesis of coffee seeds -- In-vitro regeneration of Coffea arabica var. Venecia through somatic embryogenesis -- Protocol on mutation induction in Coffea arabica using in vivo grafting and cuttings -- Protocol on mutation induction in coffee using in vitro tissue cultures -- Screening for resistance to coffee leaf rust -- Protocol to send samples of coffee leaf rust to CIFC -- Coffee leaf rust (Hemileia vastatrix) inoculation and evaluation under laboratory conditions -- Development of a PCR-Based Molecular Detection -- Technique for the Early Diagnosis of Coffee Leaf -- Rust Caused by Hemileia vastatrix -- Protocols for chromosome preparations: molecular cytogenetics and studying genome organization in coffee. .
    Abstract: This open-access book presents essential concepts and new, illustrated methods for mutation-assisted breeding of Coffea arabica L. (Arabica), one of the world's most important cash crops and beverages. Arabica coffee accounts for about 60% of the world's coffee production. Coffee leaf rust (CLR), caused by the fungus Hemileia vastatrix is the major disease affecting Arabica coffee resulting in losses of over $1 billion annually. The geographical distribution of CLR is expanding due to climate change. Moreover, the genetic improvement of Arabica coffee is constrained due to its very narrow genetic base. This protocol book covers practical methods to enhance genetic diversity in Arabica coffee through induced mutagenesis and for screening for resistance to CLR. Current breeding approaches, challenges, and opportunities for Arabica coffee improvement are briefly reviewed and a survey of common coffee diseases with emphasis on CLR is presented. Based on latest advances in science and technology, this book includes novel methods for single-cell mutagenesis using in vitro cell and tissue culture techniques and for genome-wide screening of induced mutations using genomics tools. Each protocol chapter provides step-by-step illustrated methods supported by example results. Given the impact of recent CLR epidemics on Arabica coffee production in Latin America, the book is intended to serve as a timely reference and guide for students and researchers in the agricultural sciences, plant pathologists and breeders, as well as growers and end-users interested in producing novel coffee genotypes for genetic studies, breeding, and commercial applications. .
    Type of Medium: Online Resource
    Pages: XX, 314 p. 99 illus., 92 illus. in color. , online resource.
    Edition: 1st ed. 2023.
    ISBN: 9783662672730
    DDC: 571.92
    Language: English
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  • 3
    Keywords: Life sciences ; Genetic engineering ; Agriculture ; Plant genetics ; Plant breeding ; Life Sciences ; Plant Breeding/Biotechnology ; Agriculture ; Genetic Engineering ; Plant Genetics & Genomics
    Description / Table of Contents: Mutagenesis for Crop Breeding and Functional Genomics --- Chemical and Physical Mutagenesis in Jatropha curcas --- Chemical Mutagenesis and Chimera Dissolution in Vegetatively Propagated Banana --- Mutation Induction Using Gamma Irradiation and Embryogenic Cell Suspensions in Plantain (Musa spp.) --- Optimization of Somatic Embryogenesis in Cassava --- Creation of a TILLING Population in Barley after Chemical Mutagenesis with Sodium Azide and MNU --- Site-Directed Mutagenesis in Barley by Expression of TALE Nuclease in Embryogenic Pollen --- Doubled Haploidy as a Tool for Chimera Dissolution of TALEN-Induced Mutations in Barley --- Field Evaluation of Mutagenized Rice Material --- Root Phenotyping Pipeline for Cereal Plants --- Breeding New Aromatic Rice with High Iron using Gamma Radiation and Hybridization --- Utilizing NIRS for Qualitative and Non-Destructive Identification of Seed Mutants in Large Populations --- Protocols for Proteome Analyses of Jatropha curcas --- Low-Cost Methods for DNA Extraction and Quantification --- A Protocol for Benchtop Extraction of Single-Strand-Specific Nucleases for Mutation Discovery --- A Protocol for Validation of Doubled Haploid Plants by Enzymatic Mismatch Cleavage --- Bioinformatics-Based Assessment of the Relevance of Candidate Genes for Mutation Discovery --- Mutation Detection by Analysis of DNA Heteroduplexes in TILLING Populations of Diploid Species --- Determining Mutation Density using Restriction Enzyme Sequence Comparative Analysis (RESCAN) --- Next-Generation Sequencing for Targeted Discovery of Rare Mutations in Rice
    Pages: Online-Ressource (XX, 340 pages) , 76 illustrations, 69 illustrations in color
    ISBN: 9783319450216
    Language: English
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  • 4
    Keywords: Life sciences ; Genetic engineering ; Agriculture ; Plant physiology ; Plant breeding ; Life Sciences ; Plant Breeding/Biotechnology ; Agriculture ; Genetic Engineering ; Plant Physiology
    Description / Table of Contents: Introduction --- Objectives --- Protocol for measuring soil salinity --- Protocol for screening for salt tolerance in rice --- Protocol for screening for salt tolerance in barley and wheat.  
    Pages: Online-Ressource (X, 37 pages) , 7 illustrations, 6 illustrations in color
    ISBN: 9783319265902
    Language: English
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  • 5
    Keywords: Life sciences ; Nucleic acids ; Plant breeding ; Biology ; Technique ; Life Sciences ; Plant Breeding/Biotechnology ; Biological Techniques ; Nucleic Acid Chemistry
    Description / Table of Contents: Introduction --- Health and Safety Considerations --- Sample Collection and Storage --- Low-Cost DNA Extraction --- PCR Amplification for Low-Cost Mutation Discovery --- Enzymatic Mismatch Cleavage and Agarose Gel Evaluation of Samples --- Alternative Enzymology for Mismatch Cleavage for TILLING and Ecotilling: Extraction of Enzymes form Common Weedy Plants --- Example Data --- Conclusions.  
    Pages: Online-Ressource (X, 35 pages) , 9 illustrations, 3 illustrations in color
    ISBN: 9783319162591
    Language: English
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  • 6
  • 7
    Publication Date: 2020-11-30
    Description: Background Loss of genetic variation negatively impacts breeding efforts and food security. Genebanks house over 7 million accessions representing vast allelic diversity that is a resource for sustainable breeding. Discovery of DNA variations is an important step in the efficient use of these resources. While technologies have improved and costs dropped, it remains impractical to consider resequencing millions of accessions. Candidate genes are known for most agronomic traits, providing a list of high priority targets. Heterogeneity in seed stocks means that multiple samples from an accession need to be evaluated to recover available alleles. To address this we developed a pooled amplicon sequencing approach and applied it to the out-crossing cereal rye (Secale cereale L.). Results Using the amplicon sequencing approach 95 rye accessions of different improvement status and worldwide origin, each represented by a pooled sample comprising DNA of 96 individual plants, were evaluated for sequence variation in six candidate genes with significant functions on biotic and abiotic stress resistance, and seed quality. Seventy-four predicted deleterious variants were identified using multiple algorithms. Rare variants were recovered including those found only in a low percentage of seed. Conclusions We conclude that this approach provides a rapid and flexible method for evaluating stock heterogeneity, probing allele diversity, and recovering previously hidden variation. A large extent of within-population heterogeneity revealed in the study provides an important point for consideration during rye germplasm conservation and utilization efforts.
    Electronic ISSN: 1471-2164
    Topics: Biology
    Published by BioMed Central
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  • 8
    Publication Date: 2023-03-03
    Description: Plant Breeding/Biotechnology; Biological Techniques; Nucleic Acid Chemistry
    Keywords: Plant Breeding/Biotechnology ; Biological Techniques ; Nucleic Acid Chemistry ; bic Book Industry Communication::K Economics, finance, business & management::KN Industry & industrial studies::KND Manufacturing industries ; bic Book Industry Communication::K Economics, finance, business & management::KN Industry & industrial studies::KND Manufacturing industries::KNDP Pharmaceutical industries ; bic Book Industry Communication::T Technology, engineering, agriculture::TC Biochemical engineering
    Language: English
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  • 9
    Publication Date: 2024-04-06
    Description: Agriculture; Plant
    Keywords: Agriculture ; Plant ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PST Botany and plant sciences ; thema EDItEUR::T Technology, Engineering, Agriculture, Industrial processes
    Language: English
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