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  • 1
    Call number: AWI G8-19-92587
    Description / Table of Contents: Arctic tundra ecosystems are experiencing warming twice the global average and Arctic vegetation is responding in complex and heterogeneous ways. Shifting productivity, growth, species composition, and phenology at local and regional scales have implications for ecosystem functioning as well as the global carbon and energy balance. Optical remote sensing is an effective tool for monitoring ecosystem functioning in this remote biome. However, limited field-based spectral characterization of the spatial and temporal heterogeneity limits the accuracy of quantitative optical remote sensing at landscape scales. To address this research gap and support current and future satellite missions, three central research questions were posed: • Does canopy-level spectral variability differ between dominant low Arctic vegetation communities and does this variability change between major phenological phases? • How does canopy-level vegetation colour images recorded with high and low spectral resolution devices relate to phenological changes in leaf-level photosynthetic pigment concentrations? • How does spatial aggregation of high spectral resolution data from the ground to satellite scale influence low Arctic tundra vegetation signatures and thereby what is the potential of upcoming hyperspectral spaceborne systems for low Arctic vegetation characterization? To answer these questions a unique and detailed database was assembled. Field-based canopy-level spectral reflectance measurements, nadir digital photographs, and photosynthetic pigment concentrations of dominant low Arctic vegetation communities were acquired at three major phenological phases representing early, peak and late season. Data were collected in 2015 and 2016 in the Toolik Lake Research Natural Area located in north central Alaska on the North Slope of the Brooks Range. In addition to field data an aerial AISA hyperspectral image was acquired in the late season of 2016. Simulations of broadband Sentinel-2 and hyperspectral Environmental and Mapping Analysis Program (EnMAP) satellite reflectance spectra from ground-based reflectance spectra as well as simulations of EnMAP imagery from aerial hyperspectral imagery were also obtained. Results showed that canopy-level spectral variability within and between vegetation communities differed by phenological phase. The late season was identified as the most discriminative for identifying many dominant vegetation communities using both ground-based and simulated hyperspectral reflectance spectra. This was due to an overall reduction in spectral variability and comparable or greater differences in spectral reflectance between vegetation communities in the visible near infrared spectrum. Red, green, and blue (RGB) indices extracted from nadir digital photographs and pigment-driven vegetation indices extracted from ground-based spectral measurements showed strong significant relationships. RGB indices also showed moderate relationships with chlorophyll and carotenoid pigment concentrations. The observed relationships with the broadband RGB channels of the digital camera indicate that vegetation colour strongly influences the response of pigment-driven spectral indices and digital cameras can track the seasonal development and degradation of photosynthetic pigments. Spatial aggregation of hyperspectral data from the ground to airborne, to simulated satel-lite scale was influenced by non-photosynthetic components as demonstrated by the distinct shift of the red edge to shorter wavelengths. Correspondence between spectral reflectance at the three scales was highest in the red spectrum and lowest in the near infra-red. By artificially mixing litter spectra at different proportions to ground-based spectra, correspondence with aerial and satellite spectra increased. Greater proportions of litter were required to achieve correspondence at the satellite scale. Overall this thesis found that integrating multiple temporal, spectral, and spatial data is necessary to monitor the complexity and heterogeneity of Arctic tundra ecosystems. The identification of spectrally similar vegetation communities can be optimized using non-peak season hyperspectral data leading to more detailed identification of vegetation communities. The results also highlight the power of vegetation colour to link ground-based and satellite data. Finally, a detailed characterization non-photosynthetic ecosystem components is crucial for accurate interpretation of vegetation signals at landscape scales.
    Type of Medium: Dissertations
    Pages: vi, 126 Seiten , Illustrationen
    Language: English
    Note: Dissertation, Universität Potsdam, 2019 , Table of Contents Abstract Zusammenfassung Abbreviations 1 Introduction 1.1 Scientific Background and Motivation 1.1.1 Arctic Tundra Vegetation 1.1.2 Remote Sensing of Arctic Tundra Vegetation 1.1.3 Hyperspectral Remote Sensing of Arctic Vegetation 1.2 Aims and Objectives 1.3 Study Area and Data 1.3.1 Toolik Lake Research Natural Area 1.3.2 In-situ Canopy-level Spectral Data 1.3.3 True-colour Digital Photographs 1.3.4 Leaf-level Photosynthetic Pigment Data 1.3.5 Airborne AISA Imagery 1.3.6 Simulated EnMAP and Sentinel-2 Reflectance Spectra 1.3.7 Simulated EnMAP Imagery 1.4 Thesis Structure and Author Contributions 1.4.1 Chapter 2 -A Phenological Approach to Spectral Differentiation of Low-Arctic Tundra Vegetation Communities, North Slope Alaska 1.4.2 Chapter 3 -Monitoring Pigment-driven Vegetation Changes in a Low Arctic Tundra Ecosystem Using Digital Cameras 1.4.3 Implications of Litter and Non-vascular Components on Multiscale Hyperspectral Data in a low-Arctic Ecosystem 2 A Phenological Approach to Spectral Differentiation of Low Arctic Tundra Vegetation Communities, North Slope Alaska 2.1 Abstract 2.2 Introduction 2.3 Materials and Methods 2.3.1 Study Site and Low Arctic Vegetation Types 2.3.2 Ground-Based Data and Sampling Protocol 2.3.3 EnMAP and Sentinel-2 Surface Reflectance Simulation 2.3.4 Stable Wavelength Identification Using the InStability Index 2.4 Results 2.4.1 Spectral Characteristics by Phenological Phase 2.4.2 InStability Index and Wavelength Selection of Ground-based Spectra 2.4.3 InStability Index and Wavelength Selection of Simulated Satellite Reflectance Spectra 2.5 Discussion 2.5.1 Phenological Phase and Wavelength Stability of Ground-based Spectra 2.5.2 Phenological Phase and Wavelength Stability of Satellite Resampled Spectra 2.5.3 Influence of Spatial Scale 2.6 Conclusions 2.7 Acknowledgements 2.8 Supplementary Material 2.8.1 Data Publication 3 Monitoring Pigment-driven Vegetation Changes in a Low Arctic Tundra Ecosystem Using Digital Cameras 3.1 Abstract 3.2 Introduction 3.3 Methods 3.3.1 Study Site 3.3.2 Digital Photographs 3.3.3 Field-based Spectral Data 3.3.4 Vegetation Pigment Concentration 3.3.5 Data Analyses 3.4 Results 3.4.1 RGB Indices as a Surrogate for Pigment-driven Spectral Indices 3.4.2 RGB Indices as a Surrogate for Leaf-level Pigment concentration 3.5 Discussion 3.6 Conclusions 3.7 Supplementary Material 3.7.1 Data Publication 4 Implications of Litter and Non-vascular Components on Multiscale Hyperspectral Data in a Low Arctic Ecosystem 4.1 Abstract 4.2 Introduction 4.3 Materials and Methods 4.3.1 Study Site 4.4 Remote Sensing Data 4.4.1 Ground-based Image Spectroscopy Data 4.4.2 Airborne AISA Hyperspectral Data 4.4.3 EnMAP Simulation 4.4.4 Spectral Comparison by Wavelength 4.4.5 Linear Mixture Analysis 4.5 Results 4.5.1 Spatial Scaling of Spectral Signals 4.6 Discussion 4.7 Conclusions 4.8 Acknowledgements 5 Synthesis and Discussion 5.1 Phenological Phase: does phenology influence the spectral variability of dominant low Arctic vegetation communities? 5.2 Vegetation Colour: How does canopy-level vegetation colour relate to phenological changes in leaf-level photosynthetic pigment concentration? 5.3 Intrinsic Ecosystem Components: How does spatial aggregation of high spectral resolution data influence low Arctic tundra vegetation signals? 5.4 Key Innovations 5.5 Limitations and Technical Considerations 5.6 Outlook: Opportunities for Future Research 6 References Acknowledgements
    Location: AWI Reading room
    Branch Library: AWI Library
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  • 2
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    PANGAEA
    In:  Supplement to: Beamish, Alison Leslie; Coops, Nicholas; Chabrillat, Sabine; Heim, Birgit (2017): A phenological approach to spectral differentiation of low-arctic tundra vegetation communities, North Slope, Alaska. Remote Sensing, 9(12), 1200, https://doi.org/10.3390/rs9111200
    Publication Date: 2023-03-16
    Description: Ground-based spectroscopy measurements acquired systematically within the Toolik Vegetation Grid in the 2015 and 2016 growing seasons and within the Imnavait Vegetation Grid in the 2016 growing season. Data were collected in 68 distinct 1 x 1 m long-term monitoring plots representing five distinct vegetation communities. Spectral measurements were acquired two times throughout the season in 2015 representing peak and late season and three times in 2016 representing early, peak and late season. Data were acquired using a GER 1500 field spectrometer (350-1050 nm; 512 bands, spectral resolution 3 nm, spectral sampling 1.5 nm, and 8! field of view). Spectra were collected under clear weather conditions at the highest solar zenith angle between 10:00 and 14:00 local time. Data were collected at nadir approximately 1 m off the ground resulting in a Ground Instantaneous Field of View (GIFOV) of approximately 15 cm in diameter. Nine point measurements of upwelling radiance (Lup) were collected in 1 x 1 m plots representative of the five vegetation communities and averaged to characterize the spectral variability and to reduce noise. Downwelling radiance (Ldown) was measured as the reflectance from a white Spectralon© plate. Surface reflectance (R) was processed as Lup/Ldown x 100 (0-100%). Reflectance spectra were preprocessed with a Savitzky-Golay smoothing filter (n = 11) and subset to 400-985 nm to remove sensor noise at the edges of the radiometer detector.
    Keywords: AWI_Envi; MULT; Multiple investigations; Polar Terrestrial Environmental Systems @ AWI; ToolikL_plot; Toolik Lake, Alaska
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 3
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    PANGAEA
    In:  Supplement to: Beamish, Alison Leslie; Coops, Nicholas; Hermosilla, T; Chabrillat, Sabine; Heim, Birgit (2018): Monitoring pigment-driven vegetation changes in a low-Arctic tundra ecosystem using digital cameras. Ecosphere, 9(2), e02123, https://doi.org/10.1002/ecs2.2123
    Publication Date: 2023-03-16
    Description: Ground-based spectroscopy measurements acquired systematically within the Toolik Vegetation Grid in the 2016 growing season. All data were collected in a subset of 1 x 1 m long-term monitoring plots representing three distinct vegetation communities three times representing early, peak and late season. Spectral data were acquired using a GER 1500 field spectrometer (350-1050 nm; 512 bands, spectral resolution 3 nm, spectral sampling 1.5 nm, and 8! field of view). Spectra were collected under clear weather conditions at the highest solar zenith angle between 10:00 and 14:00 local time. Data were collected at nadir approximately 1 m off the ground resulting in a Ground Instantaneous Field of View (GIFOV) of approximately 15 cm in diameter. Nine point measurements of upwelling radiance (Lup) were collected in each plot and averaged to characterize the spectral variability and to reduce noise. Downwelling radiance (Ldown) was measured as the reflectance from a white Spectralon© plate. Surface reflectance (R) was processed as Lup/Ldown x 100 (0-100%). Reflectance spectra were preprocessed with a Savitzky-Golay smoothing filter (n = 11) and subset to 400-985 nm to remove sensor noise at the edges of the radiometer detector. Digital camera data were acquired using a consumer-grade camera (Panasonic DM3 LMX, Japan) approximately 1 m off the ground with a white frame for registration of off nadir images. For detailed definitions of the RGB indices see metadata.docx. Leaves and stems of the dominant vascular species in a subset of the sampled plots were collected at early, peak, and late season for chlorophyll and carotenoid analysis.Samples were placed in porous tea bags and preserved in a silica gel desiccant in an opaque container for up to 3 months until pigment extraction (Esteban et al. 2009, doi:10.1007/s11120-009-9468-5). Each sample was homogenized by grinding with a mortar and pestle. Approximately 1.00 mg (+/- 0.05 mg) of homogenized sample was placed into a vial with 2 ml of dimethylformamide (DMF). Vials were then wrapped in aluminum foil to eliminate any degradation of pigments due to UV light and stored in a fridge (4C) for 24 hrs. Samples were measured into a cuvette prior to spectrophotometric analysis. Bulk pigments concentrations were then estimated using a spectrophotometer measuring absorption at 646.8, 663.8 and 480 nm (Porra et al. 1989, doi:10.1016/S0005-2728(89)80347-0) . Absorbance (A) values at specific wavelengths were transformed into µg/mg concentrations of chlorophyll a, Chla, chlorophyll b, Chlb, total chlorophyll, Chl, carotenoids, Car (for equations see metadata.docx). Pigment concentration was calculated as the average concentration of the dominant species in each plot. mean_"pigment" represents the mean of all biomass from each vegetation community and sd_"pigment" represents the standard deviation of each vegetation community.
    Keywords: AWI_Envi; MULT; Multiple investigations; Polar Terrestrial Environmental Systems @ AWI; ToolikL_plot; Toolik Lake, Alaska
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 4
    Publication Date: 2023-03-16
    Keywords: AWI_Envi; DATE/TIME; LATITUDE; LONGITUDE; MULT; Multiple investigations; ORDINAL NUMBER; Plot; Polar Terrestrial Environmental Systems @ AWI; Reflectance; Replicate; Season; Site; ToolikL_plot; Toolik Lake, Alaska; UTM Easting, Universal Transverse Mercator; UTM Northing, Universal Transverse Mercator; UTM Zone, Universal Transverse Mercator; Vegetation type; Wavelength
    Type: Dataset
    Format: text/tab-separated-values, 3314520 data points
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  • 5
    Publication Date: 2023-03-16
    Keywords: AWI_Envi; DATE/TIME; Event label; Imnavait_vegGrid; LATITUDE; LONGITUDE; MULT; Multiple investigations; ORDINAL NUMBER; Plot; Polar Terrestrial Environmental Systems @ AWI; Reflectance; Replicate; Season; ToolikL_plot; Toolik Lake, Alaska; UTM Easting, Universal Transverse Mercator; UTM Northing, Universal Transverse Mercator; UTM Zone, Universal Transverse Mercator; Vegetation type; Wavelength
    Type: Dataset
    Format: text/tab-separated-values, 9265320 data points
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  • 6
    Publication Date: 2023-03-16
    Keywords: after Gamon and Field (1992); after Gitelson et al. (2001); after Merzlyak et al. (1999); Anthocyanin Reflectance Index 1; Anthocyanin Reflectance Index 2; AWI_Envi; Carotenoid Reflectance Index 1; Carotenoid Reflectance Index 2; Chlorophyll Carotenoid Index; DATE/TIME; Index; LATITUDE; LONGITUDE; MULT; Multiple investigations; Photochemical Reflectance Index; Pigment Specific Simple Ratio; Plant Senescence Reflectance Index; Plot; Polar Terrestrial Environmental Systems @ AWI; PSSRa after Blackburn (1998, 1999); PSSRb after Sims and Gamon (2002); Season; Site; ToolikL_plot; Toolik Lake, Alaska; UTM Easting, Universal Transverse Mercator; UTM Northing, Universal Transverse Mercator; UTM Zone, Universal Transverse Mercator; Vegetation type
    Type: Dataset
    Format: text/tab-separated-values, 3288 data points
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  • 7
    Publication Date: 2023-03-16
    Keywords: after Gamon and Field (1992); after Gitelson et al. (2001); after Merzlyak et al. (1999); Anthocyanin Reflectance Index 1; Anthocyanin Reflectance Index 2; AWI_Envi; Carotenoid Reflectance Index 1; Carotenoid Reflectance Index 2; Carotenoids, standard deviation; Carotenoids per unit dry mass; Chlorophyll a, standard deviation; Chlorophyll a+b, standard deviation; Chlorophyll a+b per unit dry mass; Chlorophyll a per unit dry mass; Chlorophyll b, standard deviation; Chlorophyll b per unit dry mass; Chlorophyll Carotenoid Index; DATE/TIME; LATITUDE; LONGITUDE; MULT; Multiple investigations; Number; ORDINAL NUMBER; Photochemical Reflectance Index; Pigment Specific Simple Ratio; Plant Senescence Reflectance Index; Plot; Polar Terrestrial Environmental Systems @ AWI; PSSRa after Blackburn (1998, 1999); PSSRb after Sims and Gamon (2002); Ratio; Ratio, standard deviation; Season; Site; ToolikL_plot; Toolik Lake, Alaska; UTM Easting, Universal Transverse Mercator; UTM Northing, Universal Transverse Mercator; UTM Zone, Universal Transverse Mercator; Vegetation type
    Type: Dataset
    Format: text/tab-separated-values, 1181 data points
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  • 8
    Publication Date: 2023-03-16
    Keywords: AWI_Envi; Carotenoids, standard deviation; Carotenoids per unit dry mass; Chlorophyll a, standard deviation; Chlorophyll a+b, standard deviation; Chlorophyll a+b per unit dry mass; Chlorophyll a per unit dry mass; Chlorophyll b, standard deviation; Chlorophyll b per unit dry mass; DATE/TIME; Index; LATITUDE; LONGITUDE; MULT; Multiple investigations; Number; ORDINAL NUMBER; Plot; Polar Terrestrial Environmental Systems @ AWI; Ratio; Ratio, standard deviation; Season; Site; ToolikL_plot; Toolik Lake, Alaska; UTM Easting, Universal Transverse Mercator; UTM Northing, Universal Transverse Mercator; UTM Zone, Universal Transverse Mercator; Vegetation type
    Type: Dataset
    Format: text/tab-separated-values, 1060 data points
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