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  • 1
    Publication Date: 2024-06-01
    Description: Presence-absence records for four cold-water coral (CWC) taxa (Enallopsammia rostrata, Acanella arbuscula, Metallogorgia spp. and Paramuricea spp.) were gathered to conduct distribution models on seamounts (Cadamosto, Nola, Senghor and Cabo Verde) of the Cabo Verde archipelago (NW Africa), covering a bathymetric range from 2100 to 750 m water depth. Data were extracted from video footage collected with Remotely Operated Vehicles during the M80/3 Meteor (2010) and the iMirabilis2 (2021) research expeditions. Video data from the iMirabilis2 expedition was analysed, quantitively, using the open-source software BIIGLE (Langenkämper et al. 2017). Observations from five continuous 1 to 2 km-long video transects between 2000 and 1400 m depth at Cadamosto Seamount were converted into presence-absence data points. Similar data were not available for the seamounts explored during M80/3 Meteor. However, all the available images and short video clips from that expedition were analysed to identify presence and absence points for each of the four target CWC taxa. All the available presence/absence data from the two expeditions was transformed into one point per grid cell of a 100 m resolution bathymetry grid, with the prevalence of the presence records over the absence records, in grid cells where both categories overlapped.
    Keywords: Atlantic Ocean; Binary Object; Binary Object (File Size); Binary Object (Media Type); Cabo Verde; Cadamosto Seamount, Cabo Verde; Cape Verde; cold-water coral; Cruise/expedition; DATE/TIME; Deep-sea; distribution modelling; Event label; File content; Genus; Horizontal datum; iAtlantic; iMirabilis2_Leg1; iMirabilis2_Leg1_24; iMirabilis2_Leg1_46; iMirabilis2_Leg1_55; iMirabilis2_Leg1_64; iMirabilis2_Leg1_75; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; LATITUDE; Latitude, northbound; Latitude, southbound; Location; LONGITUDE; Longitude, eastbound; Longitude, westbound; M80/3; M80/3_10; M80/3_100; M80/3_33; M80/3_35; M80/3_7; M80/3_84; Meteor (1986); Presence/absence; Remote operated vehicle; ROV; ROV Luso; Sarmiento de Gamboa; Species; Taxon/taxa, unique identification (Semantic URI); Taxon/taxa, unique identification (URI); UTM Easting, Universal Transverse Mercator; UTM Northing, Universal Transverse Mercator; UTM Zone, Universal Transverse Mercator; Vertical datum; VIDEO; Video camera
    Type: Dataset
    Format: text/tab-separated-values, 10855 data points
    Location Call Number Expected Availability
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  • 2
    Publication Date: 2024-06-01
    Description: This dataset presents benthic foraminiferal δ¹⁸O chronostratigraphies and associated uncertainties for Ocean Drilling Program (ODP) Site 980 and 981, based on different tuning targets including LR04 (Lisiecki and Raymo, 2005), LR09 (Lisiecki and Raymo, 2009), CENOGRID (Westerhold et al., 2020) and Probstack (Ahn et al., 2017) and based on manual versus automated tuning techniques (Middleton et al., 2024). The benthic foraminiferal δ¹⁸O record at ODP 980 is based on Cibicidoides wuellerstorfi and Cibicides kullenbergi, and was previously published (McManus et al., 1999; Flower et al., 2000; Oppo et al., 1998). The ODP Site 981 data were measured on benthic foraminifera of the genus Cibicidoides (Raymo et al., 2004). The benthic foraminiferal δ¹⁸O records of ODP Site 980 and 981 were spliced together at ~860 ka (Raymo et al., 2004). Automated tuning is based on Hidden Markov Model (HMM)-Match-based alignments (Middleton et al., 2024) generated using the automated probabilistic HMM-Match algorithm of Lin et al. (2014). The manual alignments of ODP Site 980/981 were obtained by realigning the original age model tie points (e.g., Raymo et al., 2004) to the benthic foraminiferal LR04 δ¹⁸O stack using the QAnalySeries software (Kotov and Pälike, 2018). The dataset provides the basis for investigating and discussing the uncertainties of benthic foraminiferal δ¹⁸O stratigraphies for conventional manual and automated tuning techniques and evaluate their impact on sedimentary age models over the past 1.8 Myr (Middleton et al., 2024).
    Keywords: 162-980; 162-981; Age, dated; Age model; Cibicidoides spp., δ18O; COMPCORE; Composite Core; DEPTH, sediment/rock; Event label; Hidden Markov Model (HMM)-Match-based alignment to CENOGRID; Hidden Markov Model (HMM)-Match-based alignment to LR04; Hidden Markov Model (HMM)-Match-based alignment to LR09 Atlantic; Hidden Markov Model (HMM)-Match-based alignment to Prob-stack; Joides Resolution; Leg162; Manual Alignment to LR04; Ocean Drilling Program; ODP; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 22351 data points
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  • 3
    Publication Date: 2024-06-01
    Description: This dataset presents tie points between sediment core PS75/059-2 and IODP Site U1541 based on an alignment of high-resolution X-ray fluorescence (XRF) Fe intensity variations in both cores, obtained by Middleton et al. (2024). The splicing of the two cores provides the basis for a combination of the benthic foraminiferal δ¹⁸O records for PS75/059-2 (Ullermann et al., 2016) and IODP Site U1541 (Middleton et al., 2024).
    Keywords: 383-U1541; ANT-XXVI/2; COMPCORE; Composite Core; DEPTH, sediment/rock; EXP383; Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Joides Resolution; KL; Piston corer (BGR type); Polarstern; PS75/059-2; PS75 BIPOMAC; South Pacific Ocean
    Type: Dataset
    Format: text/tab-separated-values, 0 data points
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  • 4
    Publication Date: 2024-06-01
    Description: This dataset presents benthic foraminiferal δ¹⁸O chronostratigraphies and associated uncertainties for International Ocean Discovery Program (IODP) Site U1541, based on different tuning targets including LR04 (Lisiecki and Raymo, 2005), LR09 (Lisiecki and Raymo, 2009), CENOGRID (Westerhold et al., 2020) and Probstack (Ahn et al., 2017) and based on manual versus automated tuning techniques (Middleton et al., 2024). The benthic foraminiferal δ¹⁸O record for IODP Site U1541 (54°13'S, 125°25'W) recently recovered from the central South Pacific on IODP Expedition 383 (Winckler et al., 2021) is presented for the first time in Middleton et al. (2024). It is based on stable isotope analyses of Cibicidoides wuellerstorfi and Cibicides kullenbergi (Middleton et al., 2024), and was combined with the benthic foraminiferal δ¹⁸O record of PS75/059-2 (Ullermann et al., 2016). Automated tuning is based on Hidden Markov Model (HMM)-Match-based alignments (Middleton et al., 2024) generated using the automated probabilistic HMM-Match algorithm of Lin et al. (2014). The manual tuning was generated by visual alignment of characteristic peaks and troughs of the benthic foraminiferal δ¹⁸O record of IODP Site U1541 to the benthic foraminiferal LR04 stack using the publicly available QAnalySeries software (Kotov and Pälike, 2018). The dataset provides the basis for investigating and discussing the uncertainties of benthic foraminiferal δ¹⁸O stratigraphies for conventional manual and automated tuning techniques and evaluate their impact on sedimentary age models over the past 3.5 Myr (Middleton et al., 2024).
    Keywords: 383-U1541; 383-U1541A; 383-U1541B; 383-U1541C; Age, dated; Age model; ANT-XXVI/2; Cibicidoides spp., δ18O; COMPCORE; Composite Core; Core; Data source; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Event label; EXP383; Hidden Markov Model (HMM)-Match-based alignment to CENOGRID; Hidden Markov Model (HMM)-Match-based alignment to LR04; Hidden Markov Model (HMM)-Match-based alignment to LR09 Pacific; Hidden Markov Model (HMM)-Match-based alignment to Prob-stack; Hole; Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Joides Resolution; KL; Leg Number; Manual Alignment to LR04; Piston corer (BGR type); Polarstern; PS75/059-2; PS75 BIPOMAC; Sample code/label; Section; Section position; Site; South Pacific Ocean; Type
    Type: Dataset
    Format: text/tab-separated-values, 33741 data points
    Location Call Number Expected Availability
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  • 5
    Publication Date: 2024-06-01
    Description: This dataset presents user-defined tiepoints of the manual alignment of the benthic foraminiferal δ¹⁸O record at IODP Site U1541 to the benthic foraminiferal LR04 δ¹⁸O stack of Lisiecki and Raymo (2005) obtained by Middleton et al. (2024). The benthic foraminiferal δ¹⁸O record for IODP Site U1541 is based on stable isotope analyses of Cibicidoides wuellerstorfi and Cibicides kullenbergi, and was published in Middleton et al. (2024).
    Keywords: 383-U1541; AGE; COMPCORE; Composite Core; DEPTH, sediment/rock; EXP383; Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Joides Resolution
    Type: Dataset
    Format: text/tab-separated-values, 0 data points
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  • 6
    Publication Date: 2024-06-01
    Description: This dataset presents benthic foraminiferal δ¹⁸O chronostratigraphies for International Ocean Discovery Program (IODP) Site U1541, Ocean Drilling Program (ODP) Site 1090 and ODP Site 980-981 based on different tuning targets including LR04 (Lisiecki and Raymo, 2005), LR09 (Lisiecki and Raymo, 2009), CENOGRID (Westerhold et al., 2020) and Probstack (Ahn et al., 2017) obtained by Middleton et al. (2024). The benthic foraminiferal δ¹⁸O record for IODP Site U1541 (54°13'S, 125°25'W) recently recovered from the central South Pacific on IODP Expedition 383 (Winckler et al., 2021) is shown for the first time and is published in Middleton et al. (2024). All data records are based on Cibicidoides wuellerstorfi and Cibicides kullenbergi, or combinations thereof. The dataset provides the basis for investigating and discussing the uncertainties of benthic foraminiferal δ¹⁸O stratigraphies for conventional manual and automated tuning techniques and evaluate their impact on sedimentary age models over the past 3.5 Myr (Middleton et al., 2024).
    Keywords: Integrated Ocean Drilling Program / International Ocean Discovery Program; IODP; Ocean Drilling Program; ODP
    Type: Dataset
    Format: application/zip, 7 datasets
    Location Call Number Expected Availability
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  • 7
    Publication Date: 2024-06-01
    Description: This dataset presents user-defined tiepoints of the manual alignment of the benthic foraminiferal δ¹⁸O record at ODP Site 1090 to the benthic foraminiferal LR04 δ¹⁸O stack of Lisiecki and Raymo (2005) obtained by Middleton et al. (2024). The benthic foraminiferal δ¹⁸O record is based on Cibicidoides wuellerstorfi and was previously published in Hodell et al. (2000) and Venz and Hodell (2002).
    Keywords: 177-1090; AGE; COMPCORE; Composite Core; DEPTH, sediment/rock; Joides Resolution; Leg177; Ocean Drilling Program; ODP; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 0 data points
    Location Call Number Expected Availability
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  • 8
    Publication Date: 2024-06-01
    Description: This dataset presents user-defined tiepoints of the manual alignment of the benthic foraminiferal δ¹⁸O record at ODP Site 980 and 981 to the benthic foraminiferal LR04 δ¹⁸O stack of Lisiecki and Raymo (2005) obtained by Middleton et al. (2024). The benthic foraminiferal δ¹⁸O record at ODP 980 is based on Cibicidoides wuellerstorfi and Cibicides kullenbergi, and was previously published (McManus et al., 1999; Flower et al., 2000; Oppo et al., 1998). The ODP Site 981 data were measured on benthic foraminifera of the genus Cibicidoides (Raymo et al., 2004). The benthic foraminiferal δ¹⁸O records of ODP Site 980 and 981 were spliced together at ~860 ka (Raymo et al., 2004).
    Keywords: 162-980; 162-981; AGE; COMPCORE; Composite Core; DEPTH, sediment/rock; Event label; Joides Resolution; Leg162; Ocean Drilling Program; ODP; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 0 data points
    Location Call Number Expected Availability
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  • 9
    Publication Date: 2024-06-01
    Description: This dataset presents benthic foraminiferal δ¹⁸O chronostratigraphies and associated uncertainties for Ocean Drilling Program (ODP) Site 1090, based on different tuning targets including LR04 (Lisiecki and Raymo, 2005), LR09 (Lisiecki and Raymo, 2009), CENOGRID (Westerhold et al., 2020) and Probstack (Ahn et al., 2017) and based on manual versus automated tuning techniques (Middleton et al., 2024). The benthic foraminiferal δ¹⁸O record at ODP Site 1090 is based on Cibicidoides wuellerstorfi and was previously published in Hodell et al. (2000) and Venz and Hodell (2002). Automated tuning is based on Hidden Markov Model (HMM)-Match-based alignments (Middleton et al., 2024) generated using the automated probabilistic HMM-Match algorithm of Lin et al. (2014). The manual alignments of ODP Site 1090 were obtained by realigning the original age model tie points (Venz and Hodell, 2002) to the benthic foraminiferal LR04 δ¹⁸O stack using the QAnalySeries software (Kotov and Pälike, 2018). The dataset provides the basis for investigating and discussing the uncertainties of benthic foraminiferal δ¹⁸O stratigraphies for conventional manual and automated tuning techniques and evaluate their impact on sedimentary age models over the past 2.9 Myr (Middleton et al., 2024).
    Keywords: 177-1090; 177-1090B; 177-1090D; 177-1090E; Age, dated; Age model; Cibicidoides spp., δ18O; COMPCORE; Composite Core; Core; DEPTH, sediment/rock; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Event label; Hidden Markov Model (HMM)-Match-based alignment B to Probstack; Hidden Markov Model (HMM)-Match-based alignment to CENOGRID; Hidden Markov Model (HMM)-Match-based alignment to LR04; Hidden Markov Model (HMM)-Match-based alignment to LR09 Atlantic; Hidden Markov Model (HMM)-Match-based alignment to Prob-stack; Joides Resolution; Leg177; Leg Number; Manual Alignment to LR04; Ocean Drilling Program; ODP; PC; Piston corer; Sample code/label; Section; Section position; Site; South Atlantic Ocean; TN057-6-PC4
    Type: Dataset
    Format: text/tab-separated-values, 21310 data points
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  • 10
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2024-05-31
    Description: An essential question in ecology relies on whether to analyze functional diversity through species traits or to explore the traits' variability at the individual level. Traditionally, several studies have been based on unique values to represent species traits, assuming that intraspecific trait variation (ITV) has minimal impact on overall community trait variability. However, ITV can significantly influence assessments of individual and species adaptation to environmental disturbances, providing insights concerning density patterns, speciation, dispersal, and biological interactions. Thus, the importance of ITV was assessed from two perspectives: (i) community assembly rules and (ii) biological invasions. A dataset comprising ten morphological traits related to habitat use and diet of 5226 fishes belonging to 49 species that occupy the marginal areas of the Itaipu Reservoir (Brazil) was used as a case study. First, the relative contributions of ITV and species turnover (interspecific variability) to overall trait variability and the strength of internal and external filters on fish assemblages using individual traits were investigated. Species turnover accounted for most trait variance within assemblages, but ITV also played an important role for specific traits. Internal filters such as competition highly influence the functional diversity of fish species in an old reservoir. Alternatively, external filters (i.e., regional processes) did not present significant effects on functional traits, which may be related to their greater influence during the reservoir's filling phase. The difference between the functional niche occupied by native species and non-native ones, and the impact of non-native species dominance on the functional diversity patterns of native assemblages (indexed by functional richness, functional evenness, functional divergence, and functional redundancy) was also investigated. It was observed that the functional niche occupied by native species differs from non-native species, suggesting that non-native species have traits that enable them to exploit resources differently. Non-native species presented negative effects on the functional attributes of native fish populations, even in highly impacted environments such as reservoirs, reinforcing the importance of understanding the dynamics between native and non-native species in specific ecosystems. It is expected that the results of this study will assist in the development of public policies in the area of reservoir conservation, offering new insights into critical mechanisms associated with the biodiversity of the marginal regions of reservoirs that are exploited by human activities.
    Description: Uma questão fundamental na ecologia consiste na escolha entre analisar a diversidade funcional por meio de traços a nível de espécie ou explorar a variabilidade dentro de cada espécie, a nível de indivíduo. Tradicionalmente, a maioria dos estudos têm se baseado em valores únicos para representar os traços das espécies, assumindo que a variabilidade intraespecífica dos traços (VIT) tem um impacto mínimo na variabilidade geral dos traços em uma comunidade. No entanto, a VIT pode influenciar significativamente a adaptação das espécies a perturbações ambientais, fornecendo insights sobre padrões de densidade, especiação, dispersão e interações biológicas. Assim, a importância da VIT foi avaliada a partir de duas perspectivas: (i) regras de montagem de comunidades e (ii) invasões biológicas, utilizando como estudo de caso um conjunto de dados composto por 10 traços morfológicos relacionados ao uso de habitat e dieta de 5226 peixes pertencentes a 49 espécies que ocupam as margens do reservatório de Itaipu. Primeiro, investigou-se a contribuição relativa da VIT versus turnover de espécies (variabilidade interespecífica) para a variabilidade geral dos traços, e também quais filtros atuam sobre as assembleias de peixes utilizando dados a nível de indivíduo. O turnover de espécies representou a maior parte da variância dos traços dentro das assembleias, mas a VIT também exerceu um papel significativo, especialmente para alguns traços. Observou-se que os filtros internos, como a competição, parecem atuar sobre a diversidade funcional das espécies de peixes em um reservatório antigo. Filtros externos (ou seja, processos regionais) não apresentaram efeitos significativos, o que pode ser atribuído à sua provável maior influência durante a fase de formação do reservatório, onde mudanças ambientais ocorreram de forma mais frequente. Investigou-se também a diferença entre o nicho funcional ocupado por espécies nativas e não nativas, e o impacto da dominância de espécies não nativas sobre a riqueza, equitabilidade, divergência e redundância funcional das assembleias de peixes nativas. Observou-se que nicho funcional ocupado por espécies nativas difere das espécies não nativas, sugerindo que as espécies não nativas possuem traços que lhes permitem explorar recursos de maneira diferente. Também se demonstrou que espécies não nativas exerceram efeitos negativos nos atributos funcionais das populações de peixes nativos, mesmo em ambientes altamente impactados como os reservatórios, destacando a importância de compreender a dinâmica entre espécies nativas e não nativas dentro de ecossistemas específicos. Espera-se que os resultados deste estudo auxiliem na elaboração de políticas públicas na área da conservação de reservatórios, oferecendo novos insights sobre mecanismos críticos associados à biodiversidade das áreas marginais de reservatórios que são exploradas por atividades humanas.
    Description: PhD
    Keywords: Peixes de água doce ; Comunidades, Ecologia de ; Invasões biológicas ; Diversidade funcional ; Ecomorfologia ; Variabilidade intraespecífica dos traços (VIT) ; Reservatórios ; ASFA_2015::F::Freshwater fish ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::D::Dams ; ASFA_2015::B::Biodiversity ; ASFA_2015::D
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 77pp.
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