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  • Immunocytochemistry  (856)
  • Evolution  (687)
  • Springer  (1,540)
  • Iranian Fisheries Science Research Institute  (2)
  • 1
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    Unknown
    Springer Nature | Springer
    Publication Date: 2024-04-05
    Description: This open access book offers the first comprehensive account of the pan-genome concept and its manifold implications. The realization that the genetic repertoire of a biological species always encompasses more than the genome of each individual is one of the earliest examples of big data in biology that opened biology to the unbounded. The study of genetic variation observed within a species challenges existing views and has profound consequences for our understanding of the fundamental mechanisms underpinning bacterial biology and evolution. The underlying rationale extends well beyond the initial prokaryotic focus to all kingdoms of life and evolves into similar concepts for metagenomes, phenomes and epigenomes. The book’s respective chapters address a range of topics, from the serendipitous emergence of the pan-genome concept and its impacts on the fields of microbiology, vaccinology and antimicrobial resistance, to the study of microbial communities, bioinformatic applications and mathematical models that tie in with complex systems and economic theory. Given its scope, the book will appeal to a broad readership interested in population dynamics, evolutionary biology and genomics.
    Keywords: Microbial Genetics and Genomics ; Evolutionary Biology ; Genetics and Population Dynamics ; Microbial Ecology ; Human Genetics ; Genetics and Genomics ; Comparative genomics ; Metagenomics ; Microbial Population Analysis ; Pangenome Profile ; Supra-Genome Analysis ; Adaptive Evolution ; Computational Tools ; Bioinformatic Genomics ; Core Dispensable Genome ; Selection, Recombination, Composition ; Acquired Resistance ; Bacterial Species Concept ; Genomic Diversity ; Bacterial Ecology, Microevolution ; Open Access ; Pan-metagenomics ; Pan-microbiomics ; Pan-epigenome ; Gene Transfer ; Pan-phenomes ; Microbiology (non-medical) ; Genetics (non-medical) ; Evolution ; Applied mathematics ; Ecological science, the Biosphere ; Medical genetics ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSG Microbiology (non-medical) ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAJ Evolution ; thema EDItEUR::P Mathematics and Science::PB Mathematics::PBW Applied mathematics ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAF Ecological science, the Biosphere ; thema EDItEUR::M Medicine and Nursing::MF Pre-clinical medicine: basic sciences::MFN Medical genetics ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAK Genetics (non-medical)
    Language: English
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  • 2
    Publication Date: 2021-05-19
    Description: Coregonus lavaretus is one the important species of coregonidae family. It has adipose fin and the tail fin has a deep notch. The fish is special for fresh and cold north waters and are mainly found in north hemisphere and north of Europe, Asia and America. It feeds aquatic invertebrate and zooplanktons. The mentioned species has tasteful meat and supplies the major part of fish consumption. The big fishes meat is tasteful, low fat and has a cucumber like odorous characteristics and is mostly consumed in dried and smoked forms. Since this fish is important in inland fisheries and is releasable and developing in water sources of lakes behind dams has been considered and respect to purity of water resources behind dams. In the lake of Karaj dam has been considered as the only habitat and considered to have to low biological information from October to late march 2001 for 6 months totally 82 samples were caught and studied and through this way lack of fishing in the region by determining 11 stations, the samples were collected and grown, relation between length and weight, age and length, propagation, nutrition and fertility parameters were evaluated. Most of caught fishes are 4 to 5 year olds and 3 and 4 year olds. The 4 year olds males were majority and 5 and 6 year olds females formed the dominant group. Correlation relation between age and total length in both sexes (male and female) was very significant at 1% level, of course in females the correlation was around 100%. The weight and total length in males and females that was caught both had high correlation at 1%level; of course this correlation in females had been very stronger than males. % level related to gonad weight and sexual evolution stages of females. Gonad had correlation at 5 The most absolute fecundity had belonged to 5 year old female with 19120 ovules and the lowest to 4 year old breeder. With 11496 ovules the most relative fecundity was 62.13% and belonged to 5 year old breeder and the lowest was 36.06% belonged to 4 year old breeder by increasing the quantity of ovules in breeders the sixth stage of sexual evolution the fecundity rate has been directly increased as well. % of Gonad weight was the most effective factor on absolute fecundity and according to (R2) more than 90 variations of breeders; absolute fecundity is claimable by their gonad weight. Among all traits, affecting gonad weight fecundity the breeders sexual evolution stage has been recognized the most effective factor on fish ovules diameter. Generally in oligotrophic aquatic resources they become mature before the age of 3 and in utroph aquatic resources and full of edible zooplanktons they become mature with 2 years of age. In respect to nutrition this fish eats a broad range of zooplanktons separated from surface to bed of water of dam lake and no kind of selection was seen there so that in different ecological condition it can differ appropriately to kind of foods available in different seasons so that in cold months (December to March) the food diet of this fish varies toward eating water bed living things such as tobifex.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Biological ; Coregonus lavaretus ; Species ; Coregonidae ; Aquatic ; Zooplanktons ; Fishes ; Fisheries ; Samples ; Gonad ; Evolution ; Fecundity ; Breeders ; Zooplanktons
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 79pp.
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  • 3
    facet.materialart.
    Unknown
    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25139 | 18721 | 2018-08-26 16:57:20 | 25139 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: Coregonus lavaretus is one the important species of coregonidae family. It has adipose fin and the tail fin has a deep notch. The fish is special for fresh and cold north waters and are mainly found in north hemisphere and north of Europe, Asia and America. It feeds aquatic invertebrate and zooplanktons. The mentioned species has tasteful meat and supplies the major part of fish consumption. The big fishes meat is tasteful, low fat and has a cucumber like odorous characteristics and is mostly consumed in dried and smoked forms. Since this fish is important in inland fisheries and is releasable and developing in water sources of lakes behind dams has been considered and respect to purity of water resources behind dams. In the lake of Karaj dam has been considered as the only habitat and considered to have to low biological information from October to late march 2001 for 6 months totally 82 samples were caught and studied and through this way lack of fishing in the region by determining 11 stations, the samples were collected and grown, relation between length and weight, age and length, propagation, nutrition and fertility parameters were evaluated. Most of caught fishes are 4 to 5 year olds and 3 and 4 year olds. The 4 year olds males were majority and 5 and 6 year olds females formed the dominant group. Correlation relation between age and total length in both sexes (male and female) was very significant at 1% level, of course in females the correlation was around 100%. The weight and total length in males and females that was caught both had high correlation at 1%level; of course this correlation in females had been very stronger than males. % level related to gonad weight and sexual evolution stages of females. Gonad had correlation at 5 the most absolute fecundity had belonged to 5 year old female with 19120 ovules and the lowest to 4 year old breeder. With 11496 ovules the most relative fecundity was 62.13% and belonged to 5 year old breeder and the lowest was 36.06% belonged to 4 year old breeder by increasing the quantity of ovules in breeders the sixth stage of sexual evolution the fecundity rate has been directly increased as well. % of Gonad weight was the most effective factor on absolute fecundity and according to (R2) more than 90 variations of breeders; absolute fecundity is claimable by their gonad weight. Among all traits, affecting gonad weight fecundity the breeders sexual evolution stage has been recognized the most effective factor on fish ovules diameter. Generally in oligotrophic aquatic resources they become mature before the age of 3 and in utroph aquatic resources and full of edible zooplanktons they become mature with 2 years of age. In respect to nutrition this fish eats a broad range of zooplanktons separated from surface to bed of water of dam lake and no kind of selection was seen there so that in different ecological condition it can differ appropriately to kind of foods available in different seasons so that in cold months (December to March) the food diet of this fish varies toward eating water bed living things such as tobifex.
    Keywords: Biology ; Iran ; Karaj Dam ; Coregonus lavaretus ; Species ; Coregonidae ; Aquatic ; Zooplanktons ; Fishes ; Fisheries ; Samples ; Gonad ; Evolution ; Fecundity ; Breeders ; Zooplanktons
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 79
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Acta biotheoretica 33 (1984), S. 35-50 
    ISSN: 1572-8358
    Keywords: Evolution ; falsification ; Darwinism ; philosophy of science
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In this paper we discuss the epistemological positions of evolution theories. A sharp distinction is made between the theory that species evolved from common ancestors along specified lines of descent (here called “the theory of common descent”), and the theories intended as causal explanations of evolution (e.g. Lamarck's and Darwin's theory). The theory of common descent permits a large number of predictions of new results that would be improbable without evolution. For instance, (a) phylogenetic trees have been validated now; (b) the observed order in fossils of new species discovered since Darwin's time could be predicted from the theory of common descent; (c) owing to the theory of common descent, the degrees of similarity and difference in newly discovered properties of more or less related species could be predicted. Such observations can be regarded as attempts to falsify the theory of common descent. We conclude that the theory of common descent is an easily-falsifiable & often-tested & still-not-falsified theory, which is the strongest predicate a theory in an empirical science can obtain. Theories intended as causal explanations of evolution can be falsified essentially, and Lamarck's theory has been falsified actually. Several elements of Darwin's theory have been modified or falsified: new versions of a theory of evolution by natural selection are now the leading scientific theories on evolution. We have argued that the theory of common descent and Darwinism are ordinary, falsifiable scientific theories.
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Acta biotheoretica 35 (1986), S. 77-106 
    ISSN: 1572-8358
    Keywords: Evolution ; nonequilibrium thermodynamics ; boundary conditions models ; initial conditions models
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Proponents of two axioms of biological evolutionary theory have attempted to find justification by reference to nonequilibrium thermodynamics. One states that biological systems and their evolutionary diversification are physically improbable states and transitions, resulting from a selective process; the other asserts that there is an historically constrained inherent directionality in evolutionary dynamics, independent of natural selection, which exerts a self-organizing influence. The first, the Axiom of Improbability, is shown to be nonhistorical and thus, for a theory of change through time, acausal. Its perception of the improbability of living states is at least partially an artifact of closed system thinking. The second, the Axiom of Historically Determined Inherent Directionality, is supported evidentially and has an explicit historical component. Historically constrained dynamic populations are inherently nonequilibrium systems. It is argued that living, evolving systems, when considered to be historically constrained nonequilibrium systems, do not appear improbable at all. Thus, the two axioms are not compatible. Instead, the Axiom of Improbability is considered to result from an unjustified attempt to extend the contingent proximal actions of natural selection into the area of historical, causal explanations. It is thus denied axiomatic status, and the effects of natural selection are subsumed as an additional level of constraint in an evolutionary theory derived from the Axiom of Historically Determined Inherent Directionality.
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 1572-8358
    Keywords: Animal cognition ; Evolution ; Representation ; Computation ; Significance ; Phenomenology ; Autonomy
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A distinction is made between two definitions of animal cognition: the one most frequently employed in cognitive sciences considers cognition as extracting and processing information; a more phenomenologically inspired model considers it as attributing to a form of the outside world a significance, linked to the state of the animal. The respective fields of validity of these two models are discussed along with the limitations they entail, and the questions they pose to evolutionary biologists are emphasized. This is followed by a presentation of a general overview of what might be the study of the evolution of knowledge in animals.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Monatshefte für Chemie 125 (1994), S. 1033-1039 
    ISSN: 1434-4475
    Keywords: Prebiotic peptide formation ; Evolution ; Clay catalysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Description / Table of Contents: Zusammenfassung Die Fähigkeit von Tonmineralien der Montmorillonitklasse zur Katalyse von Peptidbildungsreaktionen aus Aminosäuren in wäßriger Lösung wurde am Beispiel von Glyzin und Kupfer sowie Kalzium und Morillonit untersucht. Experimente mit Verdampfungszyklen haben gezeigt, daß kleinere Mengen von Di- und Tripeptiden aus der Aminosäure gebildet werden. Die weitere Polymerisation von Dipeptiden hingegen scheint wesentlich leichter in diesem Reaktionssystem zu verlaufen als der Anfangsschritt der Bildung des Dipeptides. Eine mögliche Rolle von Tonmineralien in der präbiotischen Peptidevolution kann daher in der Verlängerung von Peptidketten gesehen werden. Kupferionen in der Tonmatrix zeigen keinerlei Vorteile gegenüber den üblichen Kalziumionen, die in natürlichem Montmorillonit vorkommen.
    Notes: Summary The ability of montmorillonite clay minerals for catalyzing peptide formation from amino acids in aqueous solution has been investigated using glycine and Cu2+ and Ca2+ containing montmorillonites as reaction systems. Evaporation cycle experiments showed that minor amounts of di- and tripeptide are formed from the amino acid. Further polymerization of dipeptide, however, seems to be more favoured by this reaction system than the initial step of dipeptide formation, and a possible role of clays in prebiotic peptide evolution could be seen therefore in the prolongation of peptide chains. Cu2+ ions in the clay matrix did not show any advantage over the usual Ca2+ ions embedded in natural montmorillonite.
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  • 8
    ISSN: 1433-4909
    Keywords: Key words Thermococcus ; Pyrococcus ; Thermophilic ; Phosphofructokinase ; Evolution ; ADP ; Glycolysis ; ATP
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The ADP-dependent phosphofructokinase (PFK) from Thermococcus zilligii has been purified 950 fold; it had a specific activity of 190 U mg−1. The enzyme required Mg2+ ions for optimal activity and was specific for ADP. The forward reaction kinetics were hyperbolic for both cosubstrates (pH optimum of 6.4), and the apparent K m values for ADP and fructose-6-phosphate were 0.6 mM (apparent V max of 243 U mg−1) and 1.47 mM (apparent V max of 197 U mg−1), respectively. Significantly, the enzyme is indicated to be nonallosteric but was slightly activated by some monovalent cations including Na+ and K+. The protein had a subunit size of 42.2 kDa and an estimated native molecular weight of 66 kDa (gel filtration). Maximal reaction rates for the reverse reaction were attained at pH 7.5–8.0, and the apparent K m values for fructose-1,6-bisphosphate and AMP were 0.56 mM (apparent V max of 2.9 U mg−1) and 12.5 mM, respectively. The biochemical characteristics of this unique ADP-dependent enzymatic activity are compared to ATP and pyrophosphate-dependent phosphofructokinases.
    Type of Medium: Electronic Resource
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  • 9
    ISSN: 1433-4909
    Keywords: Key wordsNatronomonas pharaonis ; Natronobacteria ; Archaea ; Serine protease ; Chymotrypsinogen ; Evolution
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A protease of a molecular mass of approximately 30 kDa was isolated and purified from the haloalkaliphilic archaeon Natronomonas (formerly Natronobacterium) pharaonis. The enzyme hydrolyzed synthetic peptides, preferentially at the carboxyl terminus of phenylalanine or leucine, as well as large proteins. Hydrolysis occurred over the range of pH from 6 to 12, with an optimum at pH 10. The temperature optimum was 61°C. The enzyme was nearly equally active over the range of salt concentration from 0.5 to 4 M (NaCl or KCl). A strong cross-reaction with a polyclonal antiserum against human chymotrypsin was observed. Enzymatic activity was inhibited by typical serine protease inhibitors. There was significant homology between N-terminal and internal sequences from autolytic fragments and the sequence of bovine chymotrypsinogen B; the overall amino acid composition was similar to that of vertebrate chymotrypsinogens. Evidence for a zymogen-like processing of the protease was obtained. Cell extracts from other halobacteria exhibited similar proteolytic activity and immunoreactivity. The data suggested a widespread distribution of a chymotrypsinogen B-like protease among halo- and haloalkaliphilic Archaea.
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    Springer
    Cellular and molecular life sciences 41 (1985), S. 1554-1557 
    ISSN: 1420-9071
    Keywords: Immunocytochemistry ; neuropeptide Y ; radioimmunoassay ; rat pancreas
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Summary Significant quantities of a newly discovered peptide, neuropeptide Y, were found in the rat pancreas, where they were localized to nerves in the exocrine parenchyma and around arterial and ductal structures. Although unaffected by surgical parasympathectomy, the periarterial and periductal nerves were abolished by chemical sympathectomy, suggesting that NPY is partially costored with sympathetic transmitters in nerve fibers.
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