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  • 1
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    A deep-learning automated image recognition method for measuring pore patterns in closely related bolivinids and calibration for quantitative nitrate paleo-reconstructions (2023)
    Nature Research
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    Publication Date: 2024-02-07
    Description: Eutrophication is accelerating the recent expansion of oxygen-depleted coastal marine environments. Several bolivinid foraminifera are abundant in these oxygen-depleted settings, and take up nitrate through the pores in their shells for denitrification. This makes their pore density a possible nitrate proxy. This study documents three aspects related to the porosity of bolivinids. 1. A new automated image analysis technique to determine the number of pores in bolivinids is tested. 2. The pore patterns of Bolivina spissa from five different ocean settings are analysed. The relationship between porosity, pore density and mean pore size significantly differs between the studied locations. Their porosity is mainly controlled by the size of the pores at the Gulf of Guayaquil (Peru), but by the number of pores at other studied locations. This might be related to the presence of a different cryptic Bolivina species in the Gulf of Guayaquil. 3. The pore densities of closely related bolivinids in core-top samples are calibrated as a bottom-water nitrate proxy. Bolivina spissa and Bolivina subadvena showed the same correlation between pore density and bottom-water nitrate concentrations, while the pore density of Bolivina argentea and Bolivina subadvena accumeata is much higher.
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  • 2
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    A genomic view of the microbiome of coral reef demosponges (2021)
    Nature Research
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    Publication Date: 2024-02-07
    Description: Sponges underpin the productivity of coral reefs, yet few of their microbial symbionts have been functionally characterised. Here we present an analysis of ~1200 metagenome-assembled genomes (MAGs) spanning seven sponge species and 25 microbial phyla. Compared to MAGs derived from reef seawater, sponge-associated MAGs were enriched in glycosyl hydrolases targeting components of sponge tissue, coral mucus and macroalgae, revealing a critical role for sponge symbionts in cycling reef organic matter. Further, visualisation of the distribution of these genes amongst symbiont taxa uncovered functional guilds for reef organic matter degradation. Genes for the utilisation of sialic acids and glycosaminoglycans present in sponge tissue were found in specific microbial lineages that also encoded genes for attachment to sponge-derived fibronectins and cadherins, suggesting these lineages can utilise specific structural elements of sponge tissue. Further, genes encoding CRISPR and restriction-modification systems used in defence against mobile genetic elements were enriched in sponge symbionts, along with eukaryote-like gene motifs thought to be involved in maintaining host association. Finally, we provide evidence that many of these sponge-enriched genes are laterally transferred between microbial taxa, suggesting they confer a selective advantage within the sponge niche and therefore play a critical role in host ecology and evolution.
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  • 3
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    Disproportionately strong climate forcing from extratropical explosive volcanic eruptions (2019)
    Nature Research
    In:  Nature Geoscience, 12 (2). pp. 100-107.
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    Publication Date: 2022-01-31
    Description: Extratropical volcanic eruptions are commonly thought to be less effective at driving large-scale surface cooling than tropical eruptions. However, recent minor extratropical eruptions have produced a measurable climate impact, and proxy records suggest that the most extreme Northern Hemisphere cold period of the Common Era was initiated by an extratropical eruption in 536 CE. Using ice-core-derived volcanic stratospheric sulfur injections and Northern Hemisphere summer temperature reconstructions from tree rings, we show here that in proportion to their estimated stratospheric sulfur injection, extratropical explosive eruptions since 750 CE have produced stronger hemispheric cooling than tropical eruptions. Stratospheric aerosol simulations demonstrate that for eruptions with a sulfur injection magnitude and height equal to that of the 1991 Mount Pinatubo eruption, extratropical eruptions produce time-integrated radiative forcing anomalies over the Northern Hemisphere extratropics up to 80% greater than tropical eruptions, as decreases in aerosol lifetime are overwhelmed by the enhanced radiative impact associated with the relative confinement of aerosol to a single hemisphere. The model results are consistent with the temperature reconstructions, and elucidate how the radiative forcing produced by extratropical eruptions is strongly dependent on the eruption season and sulfur injection height within the stratosphere.
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  • 4
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    Drivers of river reactivation in North Africa during the last glacial cycle (2021)
    Nature Research
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    Publication Date: 2024-02-07
    Description: North African greening phases, during which large rivers ran through the Sahara Desert, occurred repeatedly during the Quaternary and are regarded as key periods for the development of past human populations. However, the timing and mechanisms responsible for the reactivation of the presently dormant fluvial systems remain highly uncertain. Here we present hydroclimate changes over the past 160,000 years, reconstructed from analyses of the provenance of terrestrial sediments in a marine sediment record from the Gulf of Sirte (offshore Libya). By combining high-resolution proxy data with transient Earth system model simulations, we are able to identify the various drivers that led to the observed shifts in hydroclimate and landscapes. We show that river runoff occurred during warm interglacial phases of Marine Isotope Stages 1 and 5 due to precession-forced enhancements in the summer and autumn rainfall over the entire watershed, which fed presently dry river systems and intermittent coastal streams. In contrast, shorter-lasting and less-intense humid events during glacial Marine Isotope Stages 3 and 4 were related to autumn and winter precipitation over the Libyan coastal regions driven by Mediterranean storms. Our results reveal large shifts in hydroclimate environments during the last glacial cycle, which probably exerted a strong evolutionary and structural control on past human populations, potentially pacing their dispersal across northern Africa.
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  • 5
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    Gas hydrate dissociation off Svalbard induced by isostatic rebound rather than global warming (2018)
    Nature Research
    In:  Nature Communications, 9 (Article number: 83 ).
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    Publication Date: 2021-03-19
    Description: Methane seepage from the upper continental slopes of Western Svalbard has previously been attributed to gas hydrate dissociation induced by anthropogenic warming of ambient bottom waters. Here we show that sediment cores drilled off Prins Karls Foreland contain freshwater from dissociating hydrates. However, our modeling indicates that the observed pore water freshening began around 8 ka BP when the rate of isostatic uplift outpaced eustatic sea-level rise. The resultant local shallowing and lowering of hydrostatic pressure forced gas hydrate dissociation and dissolved chloride depletions consistent with our geochemical analysis. Hence, we propose that hydrate dissociation was triggered by postglacial isostatic rebound rather than anthropogenic warming. Furthermore, we show that methane fluxes from dissociating hydrates were considerably smaller than present methane seepage rates implying that gas hydrates were not a major source of methane to the oceans, but rather acted as a dynamic seal, regulating methane release from deep geological reservoirs.
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  • 6
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    Global ozone depletion and increase of UV radiation caused by pre-industrial tropical volcanic eruptions (2019)
    Nature Research
    In:  Scientific Reports, 9 (Article number: 9435).
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    Publication Date: 2022-01-31
    Description: Large explosive tropical volcanic eruptions inject high amounts of gases into the stratosphere, where they disperse globally through the large-scale meridional circulation. There is now increasing observational evidence that volcanic halogens can reach the upper troposphere and lower stratosphere. Here, we present the first study that combines measurement-based data of sulfur, chlorine and bromine releases from tropical volcanic eruptions with complex coupled chemistry climate model simulations taking radiative-dynamical-chemical feedbacks into account. Halogen model input parameters represent a size-time-region-wide average for the Central American eruptions over the last 200 ka ensuring a comprehensive perspective. The simulations reveal global, long-lasting impact on the ozone layer affecting atmospheric composition and circulation for a decade. Column ozone drops below 220 DU (ozone hole conditions) in the tropics, Arctic and Antarctica, increasing biologically active UV by 80 to 400%. Our model results could potentially be validated using high-resolution proxies from ice cores and pollen records.
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  • 7
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    Host–symbiont combinations dictate the photo-physiological response of reef-building corals to thermal stress (2019)
    Nature Research
    In:  Scientific Reports, 9 (1). Art.Nr. 9985.
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    Publication Date: 2022-01-31
    Description: High sea surface temperatures often lead to coral bleaching wherein reef-building corals lose significant numbers of their endosymbiotic dinoflagellates (Symbiodiniaceae). These increasingly frequent bleaching events often result in large scale coral mortality, thereby devasting reef systems throughout the world. The reef habitats surrounding Palau are ideal for investigating coral responses to climate perturbation, where many inshore bays are subject to higher water temperature as compared with offshore barrier reefs. We examined fourteen physiological traits in response to high temperature across various symbiotic dinoflagellates in four common Pacific coral species, Acropora muricata, Coelastrea aspera, Cyphastrea chalcidicum and Pachyseris rugosa found in both offshore and inshore habitats. Inshore corals were dominated by a single homogenous population of the stress tolerant symbiont Durusdinium trenchii, yet symbiont thermal response and physiology differed significantly across coral species. In contrast, offshore corals harbored specific species of Cladocopium spp. (ITS2 rDNA type-C) yet all experienced similar patterns of photoinactivation and symbiont loss when heated. Additionally, cell volume and light absorption properties increased in heated Cladocopium spp., leading to a greater loss in photo-regulation. While inshore coral temperature response was consistently muted relative to their offshore counterparts, high physiological variability in D. trenchii across inshore corals suggests that bleaching resilience among even the most stress tolerant symbionts is still heavily influenced by their host environment.
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  • 8
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    Identifying metabolic pathways for production of extracellular polymeric substances by the diatom Fragilariopsis cylindrus inhabiting sea ice (2018)
    Nature Research
    In:  The ISME Journal, 12 (5). pp. 1237-1251.
    Details
    Publication Date: 2021-02-08
    Description: Diatoms are significant primary producers in sea ice, an ephemeral habitat with steep vertical gradients of temperature and salinity characterizing the ice matrix environment. To cope with the variable and challenging conditions, sea ice diatoms produce polysaccharide-rich extracellular polymeric substances (EPS) that play important roles in adhesion, cell protection, ligand binding and as organic carbon sources. Significant differences in EPS concentrations and chemical composition corresponding to temperature and salinity gradients were present in sea ice from the Weddell Sea and Eastern Antarctic regions of the Southern Ocean. To reconstruct the first metabolic pathway for EPS production in diatoms, we exposed Fragilariopsis cylindrus, a key bi-polar diatom species, to simulated sea ice formation. Transcriptome profiling under varying conditions of EPS production identified a significant number of genes and divergent alleles. Their complex differential expression patterns under simulated sea ice formation was aligned with physiological and biochemical properties of the cells, and with field measurements of sea ice EPS characteristics. Thus, the molecular complexity of the EPS pathway suggests metabolic plasticity in F. cylindrus is required to cope with the challenging conditions of the highly variable and extreme sea ice habitat.
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  • 9
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    On the effect of low oxygen concentrations on bacterial degradation of sinking particles (2017)
    Nature Research
    In:  Scientific Reports, 7 (1). Art. No. 16722.
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    Publication Date: 2020-06-18
    Description: In marine oxygen (O2) minimum zones (OMZs), the transfer of particulate organic carbon (POC) to depth via the biological carbon pump might be enhanced as a result of slower remineralisation under lower dissolved O2 concentrations (DO). In parallel, nitrogen (N) loss to the atmosphere through microbial processes, such as denitrification and anammox, is directly linked to particulate nitrogen (PN) export. However it is unclear (1) whether DO is the only factor that potentially enhances POC transfer in OMZs, and (2) if particle fluxes are sufficient to support observed N loss rates. We performed a degradation experiment on sinking particles collected from the Baltic Sea, where anoxic zones are observed. Sinking material was harvested using surface-tethered sediment traps and subsequently incubated in darkness at different DO levels, including severe suboxia (〈0.5 mg l−1 DO). Our results show that DO plays a role in regulating POC and PN degradation rates. POC(PN) degradation was reduced by approximately 100% from the high to low DO to the lowest DO. The amount of NH4+ produced from the pool of remineralising organic N matched estimations of NH4+ anammox requirements during our experiment. This anammox was likely fueled by DON degradation rather than PON degradation.
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  • 10
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    Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system (2022)
    Nature Research
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    Publication Date: 2024-02-07
    Description: Coastal upwelling zones are hotspots of oceanic productivity, driven by phytoplankton photosynthesis. Bacteria, in turn, grow on and are the principal remineralizers of dissolved organic matter (DOM) produced in aquatic ecosystems. However, the molecular processes that key bacterial taxa employ to regulate the turnover of phytoplankton-derived DOM are not well understood. We therefore carried out comparative time-series metatranscriptome analyses of bacterioplankton in the Northwest Iberian upwelling system, using parallel sampling of seawater and mesocosms with in situ-like conditions. The mesocosm experiment uncovered a taxon-specific progression of transcriptional responses from bloom development (characterized by a diverse set of taxa in the orders Cellvibrionales, Rhodobacterales, and Pelagibacterales), over early decay (mainly taxa in the Alteromonadales and Flavobacteriales), to senescence phases (Flavobacteriales and Saprospirales taxa). Pronounced order-specific differences in the transcription of glycoside hydrolases, peptidases, and transporters were found, supporting that functional resource partitioning is dynamically structured by temporal changes in available DOM. In addition, comparative analysis of mesocosm and field samples revealed a high degree of metabolic plasticity in the degradation and uptake of carbohydrates and nitrogen-rich compounds, suggesting these gene systems critically contribute to modulating the stoichiometry of the labile DOM pool. Our findings suggest that cascades of transcriptional responses in gene systems for the utilization of organic matter and nutrients largely shape the fate of organic matter on the time scales typical of upwelling-driven phytoplankton blooms.
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  • 11
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    Reduced methane seepage from Arctic sediments during cold bottom-water conditions (2020)
    Nature Research
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    Publication Date: 2023-02-08
    Description: Large amounts of methane are trapped within gas hydrate in subseabed sediments in the Arctic Ocean, and bottom-water warming may induce the release of methane from the seafloor. Yet the effect of seasonal temperature variations on methane seepage activity remains unknown as surveys in Arctic seas are conducted mainly in summer. Here we compare the activity of cold seeps along the gas hydrate stability limit offshore Svalbard during cold (May 2016) and warm (August 2012) seasons. Hydro-acoustic surveys revealed a substantially decreased seepage activity during cold bottom-water conditions, corresponding to a 43% reduction of total cold seeps and methane release rates compared with warmer conditions. We demonstrate that cold seeps apparently hibernate during cold seasons, when more methane gas becomes trapped in the subseabed sediments. Such a greenhouse gas capacitor increases the potential for methane release during summer months. Seasonal bottom-water temperature variations are common on the Arctic continental shelves. We infer that methane-seep hibernation is a widespread phenomenon that is underappreciated in global methane budgets, leading to overestimates in current calculations.
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  • 12
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    Strike-slip 23 January 2018 MW 7.9 Gulf of Alaska rare intraplate earthquake: Complex rupture of a fracture zone system (2018)
    Nature Research
    In:  Scientific Reports, 8 (13706).
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    Publication Date: 2021-03-19
    Description: Large intraplate earthquakes in oceanic lithosphere are rare and usually related to regions of diffuse deformation within the oceanic plate. The 23 January 2018 MW 7.9 strike-slip Gulf of Alaska earthquake ruptured an oceanic fracture zone system offshore Kodiak Island. Bathymetric compilations show a muted topographic expression of the fracture zone due to the thick sediment that covers oceanic basement but the fracture zone system can be identified by offset N-S magnetic anomalies and E-W linear zones in the vertical gravity gradient. Back-projection from global seismic stations reveals that the initial rupture at first propagated from the epicenter to the north, likely rupturing along a weak zone parallel to the ocean crustal fabric. The rupture then changed direction to eastward directed with most energy emitted on Aka fracture zone resulting in an unusual multi-fault earthquake. Similarly, the aftershocks show complex behavior and are related to two different tectonic structures: (1) events along N-S trending oceanic fabric, which ruptured mainly strike-slip and additionally, in normal and oblique slip mechanisms and (2) strike-slip events along E-W oriented fracture zones. To explain the complex faulting behavior we adopt the classical stress and strain partitioning concept and propose a generalized model for large intra-oceanic strike-slip earthquakes of trench-oblique oriented fracture zones/ocean plate fabric near subduction zones. Taking the Kodiak asperity position of 1964 maximum afterslip and outer-rise Coulomb stress distribution into account, we propose that the unusual 2018 Gulf of Alaska moment release was stress transferred to the incoming oceanic plate from co- and post-processes of the nearby great 1964 MW 9.2 megathrust earthquake.
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  • 13
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    The role of host promiscuity in the invasion process of a seaweed holobiont (2021)
    Nature Research
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    Publication Date: 2024-02-07
    Description: Invasive species are co-introduced with microbiota from their native range and also interact with microbiota found in the novel environment to which they are introduced. Host flexibility toward microbiota, or host promiscuity, is an important trait underlying terrestrial plant invasions. To test whether host promiscuity may be important in macroalgal invasions, we experimentally simulated an invasion in a common garden setting, using the widespread invasive macroalga Agarophyton vermiculophyllum as a model invasive seaweed holobiont. After disturbing the microbiota of individuals from native and non-native populations with antibiotics, we monitored the microbial succession trajectories in the presence of a new source of microbes. Microbial communities were strongly impacted by the treatment and changed compositionally and in terms of diversity but recovered functionally by the end of the experiment in most respects. Beta-diversity in disturbed holobionts strongly decreased, indicating that different populations configure more similar –or more common– microbial communities when exposed to the same conditions. This decline in beta-diversity occurred not only more rapidly, but was also more pronounced in non-native populations, while individuals from native populations retained communities more similar to those observed in the field. This study demonstrates that microbial communities of non-native A. vermiculophyllum are more flexibly adjusted to the environment and suggests that an intraspecific increase in host promiscuity has promoted the invasion process of A. vermiculophyllum. This phenomenon may be important among invasive macroalgal holobionts in general.
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