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  • 1
    Publication Date: 2024-06-06
    Description: Aim: The efficiency of animal-mediated seed dispersal is threatened by the decline of animal populations, especially in tropical forests. We hypothesise that large-seeded plants with animal-mediated dispersal tend to have limited geographic ranges and face an increased risk of extinction due to the potential decline in seed dispersal by large-bodied fruit-eating and seed-dispersing animals (frugivores). Location: Atlantic Forest, Brazil, South America. Taxon: Angiosperms. Methods: First, we collected dispersal-related traits (dispersal syndrome, fruit size, and seed size), growth form (tree, climber, and other) and preferred vegetation type (open and closed) data for 1052 Atlantic Forest plant species. Next, we integrated these with occurrence records, extinction risk assessments, and phylogenetic trees. Finally, we performed phylogenetic generalised least squares regressions to test the direct and interactive effects of dispersal-related traits and vegetation type on geographical range size. Results: Large-seeded species had smaller range sizes than small-seeded species, but only for species with animal-mediated dispersal, not for those dispersed by abiotic mechanisms. However, plants with abiotic dispersal had overall smaller range sizes than plants with animal-mediated dispersal. Furthermore, we found that species restricted to forests had smaller ranges than those occurring in open or mixed vegetation. Finally, at least 29% of the Atlantic Forest flora is threatened by extinction, but this was not related to plant dispersal syndromes. Main Conclusions: Large-seeded plants with animal-mediated dispersal may be suffering from dispersal limitation, potentially due to past and ongoing defaunation of large-bodied frugivores, leading to small range sizes. Other factors, such as deforestation and fragmentation, will probably modulate the effects of dispersal on range size, and ultimately extinction. Our study sheds light on the relationship between plant traits, mutualistic interactions, and distribution that are key to the functioning of tropical forests.
    Keywords: defaunation ; extinction risk ; frugivory ; phylogeny ; range size ; seed dispersal ; tropical forest
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 2
    Publication Date: 2024-06-06
    Description: Aim Species have different distribution patterns across the globe and among biogeographical regions. The Nearctic and Palaearctic regions share lineages because of their parallel biogeographic histories and ecological conditions. As the number of phylogenetic studies increases, there are more insights into past exchange events between these two regions and their effects on the current distribution of diversity. However, several groups have not been tested and an overall generalization is still missing. Here, we analyse the biogeographic history across multiple genera of odonates to elucidate a general process of species exchange, vicariance and species divergence between these two regions. Location The Holarctic, including the entire Nearctic and the East and West Palaearctic. Taxon 14 genera of Odonata (Insecta). Methods We reconstructed a time-calibrated phylogenetic tree for each genus to determine species relationships and divergence time using 3614 COI sequences of 259 species. Biogeographic ancestral range estimation was inferred for each phylogeny using BioGeoBEARS. Preferred habitat (lotic versus lentic) was established for each species. Results Exchange events were not restricted in time, direction or either lentic habitat or lotic habitat. Most genera crossed between both regions only once, and it was mainly across the Beringia, while three diverse anisopteran genera revealed multiple exchanges. Recent exchanges during the Pleistocene were associated with cold-dwelling and lentic species. Main Conclusions Our finding reveals the absence of a generalizable pattern of species exchange and divergence between the Nearctic and Palaearctic regions; instead, we found lineage-specific biogeographic patterns. This finding highlights the complexity of drivers and functional traits that shaped current diversity patterns. Moreover, it emphasizes that general conclusions cannot be formulated based on one single clade.
    Keywords: biogeography ; climate change ; damselflies ; dragonflies ; Holarctic
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 3
    Publication Date: 2024-06-04
    Description: Yedoma is a permafrost deposit widely distributed across the Arctic and found exclusively within the unglaciated regions in northern Siberia, Alaska, and the Yukon, which are the core regions of Beringia. Yedoma deposits accumulated during the late Pleistocene Stage and are characterized by their predominantly fine-grained texture and association with syngenetic perma-frost formation. The very high ground ice content is most commonly present as pore ice and wedge ice that formed contemporaneously with sediment deposition. In the last decade, research has transitioned from debates about the origin of the Yedoma deposits towards increasing attention on the large carbon and nitrogen pools in Yedoma, their vulnerability to thaw, and increasing mobilization as the climate has warmed across the Arctic. In addition to classical cryolithological and sedimentological research, new methods such as stable isotope paleoclimate reconstruction and ancient sedimentary DNA studies have been more widely applied to better understand the characteristics of Yedoma deposits and helped emphasize their value as archives of Quaternary climate and paleoecological conditions during Ice Age Beringia.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 4
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    Wiley
    In:  Ecology and Evolution vol. 12 no. e9549 | H2020 European Institute of Innovation and Technology, Grant/Award Number: 813360; Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Grant/ Award Number: 16.161.301
    Publication Date: 2024-05-30
    Description: Monitoring community composition of Foraminifera (single-celled marine protists) pro-vides valuable insights into environmental conditions in marine ecosystems. Despitethe efficiency of environmental DNA (eDNA) and bulk-sample DNA (bulk-DNA) me-tabarcoding to assess the presence of multiple taxa, this has not been straightforwardfor Foraminifera partially due to the high genetic variability in widely used ribosomalmarkers. Here, we test the correctness in retrieving foraminiferal communities by me-tabarcoding of mock communities, bulk-DNA from coral reef sediment samples, andeDNA from their associated ethanol preservative using the recently sequenced cy-tochrome c oxidase subunit 1 (COI) marker. To assess the detection success, we com-pared our results with large benthic foraminiferal communities previously reportedfrom the same sampling sites. Results from our mock communities demonstrate thatall species were detected in two mock communities and all but one in the remainingfour. Technical replicates were highly similar in number of reads for each assigned ASVin both the mock communities and bulk-DNA samples. Bulk-DNA showed a signifi-cantly higher species richness than their associated eDNA samples, and also detectedadditional species to what was already reported at the specific sites. Our study con-firms that metabarcoding using the foraminiferal COI marker adequately retrieves thediversity and community composition of both the mock communities and the bulk-DNA samples. With its decreased variability compared with the commonly used nu-clear 18 S rRNA, the COI marker renders bulk-DNA metabarcoding a powerful tool toassess foraminiferal community composition under the condition that the referencedatabase is adequate to the target taxa.
    Keywords: bulk-sample ; DNA ; community composition ; coral reef ; environmental DNA ; foraminifera ; metabarcoding
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 5
    Publication Date: 2024-05-30
    Description: The toxin-producing dinoflagellate Alexandrium pseudogonyaulax has become increasingly abundant in northern European waters, replacing other Alexandrium species. A. pseudogonyaulax produces goniodomins and lytic substances, which can be cytotoxic toward other organisms, including fish, but we still know little about the environmental conditions influencing its growth and toxicity. Here, we investigated the impacts of different nitrogen sources and light intensities, common bottom-up drivers of bloom formation, on the growth and toxin content of three A. pseudogonyaulax strains isolated from the Danish Limfjord. While the growth rates were significantly influenced by nitrogen source and light intensity, the intracellular toxin contents only showed strong differences between the exponential and stationary growth phases. Moreover, the photophysiological response of A. pseudogonyaulax showed little variation across varying light intensities, while light-harvesting pigments were significantly more abundant under low light conditions. This study additionally highlights considerable physiological variability between strains, emphasizing the importance of conducting laboratory experiments with several algal strains. A high physiological plasticity toward changing abiotic parameters points to a long-term establishment of A. pseudogonyaulax in northern European waters.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 6
    Publication Date: 2024-05-30
    Description: The toxin-producing dinoflagellate Alexandrium pseudogonyaulax has become increasingly abundant in northern European waters, replacing other Alexandrium species. A. pseudogonyaulax produces goniodomins and lytic substances, which can be cytotoxic toward other organisms, including fish, but we still know little about the environmental conditions influencing its growth and toxicity. Here, we investigated the impacts of different nitrogen sources and light intensities, common bottom-up drivers of bloom formation, on the growth and toxin content of three A. pseudogonyaulax strains isolated from the Danish Limfjord. While the growth rates were significantly influenced by nitrogen source and light intensity, the intracellular toxin contents only showed strong differences between the exponential and stationary growth phases. Moreover, the photophysiological response of A. pseudogonyaulax showed little variation across varying light intensities, while light-harvesting pigments were significantly more abundant under low light conditions. This study additionally highlights considerable physiological variability between strains, emphasizing the importance of conducting laboratory experiments with several algal strains. A high physiological plasticity toward changing abiotic parameters points to a long-term establishment of A. pseudogonyaulax in northern European waters.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 7
    Publication Date: 2024-05-29
    Description: Fault creep along the lower eastern flank of Mt. Etna volcano has been documented since the end of the 19th century and significantly contributes to the surface faulting hazard in the area. On 29 October 2002, during a seismic swarm related to dyke intrusions, two earthquakes caused extensive damage and surface faulting in an area between the Santa Venerina and Santa Tecla villages. On the same day after the two earthquakes, an episodic aseismic creep occurred along the Scalo Pennisi Fault close to the Santa Tecla coastline. On 8 February 2022, during another aseismic creep event along the Scalo Pennisi Fault, we observed the reopening of the pre existing 2002 ground ruptures mostly as pure dilational fractures. We mapped the 2002 and 2022 surface ruptures, and collected data on displacement, length, and pattern of ground breaks. Ground ruptures affected structures located along the activated fault segments, including roads, walls and buildings. The 2002 surface faulting propagation can be ascribed to a sliding of the Mt. Etna eastern flank toward the SE, as also suggested by the related shallow seismicity, and InSAR and geodetic data between 2002 and 2005. For the 2022 event, dif ferential InSAR data, acquired in both descending and ascending views, allowed us to decompose Line of Sight (LOS) displacement into horizontal and vertical components. We detect a ~ 700 m long and ~ 500 m wide deformation zone with a downward and eastward motion (max displacement ~1,5 cm) consistent with a normal fault. We inverted the InSAR–detected surface deformation using a uniform-slip fault model and obtained a shallow detachment for the causative fault, located at ~300 m depth, within the volcanic pile. This is the first in depth study along the Scalo Pennisi Fault to suggest a shallow faulting that accommodates Mt. Etna E flank gravitational sliding.
    Description: Published
    Description: 229829
    Description: JCR Journal
    Keywords: Etna ; Aseismic creep ; Earthquake ; Surface faulting ; Volcano-tectonic deformation ; InSAR
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 8
    Publication Date: 2024-05-28
    Description: Nominally anhydrous minerals (NAMs) may contain significant amounts of water and constitute an important reservoir for mantle hydrogen. The colloquial term ‘water’ in NAMs is related to the presence of hydroxyl-bearing (OH􀀀 ) point defects in their crystal structure, where hydrogen is bonded to lattice oxygen and is charge-balanced by cation vacancies. This hydrous component may therefore have substantial effects on the thermoelastic parameters of NAMs, comparable to other major crystal-chemical substitutions (e.g., Fe, Al). Assessment of water concentrations in natural minerals from mantle xenoliths indicates that olivine commonly stores ~0–200 ppm of water. However, the lack of samples originating from depths exceeding ~250 km coupled with the rapid diffusion of hydrogen in olivine at magmatic temperatures makes the determination of the olivine water content in the upper mantle challenging. On the other hand, numerous experimental data show that, at pressures and temperatures corresponding to deep upper mantle conditions, the water storage capacity of olivine increases to 0.2–0.5 wt%. Therefore, determining the elastic properties of olivine samples with more realistic water contents for deep upper mantle conditions may help in interpreting both seismic velocity anomalies in potentially hydrous regions of Earth’s mantle as well as the observed seismic velocity and density contrasts across the 410-km discontinuity. Here, we report simultaneous single-crystal X-ray diffraction and Brillouin scattering experiments at room temperature up to 11.96(2) GPa on hydrous [0.20(3) wt% H2O] Fo90 olivine to assess its full elastic tensor, and complement these results with a careful re-analysis of all the available single-crystal elasticity data from the literature for anhydrous Fo90 olivine. While the bulk (K) and shear (G) moduli of hydrous Fo90 olivine are virtually identical to those of the corresponding anhydrous phase, their pressure derivatives K′ and G′ are slightly larger, although consistent within mutual uncertainties. We then defined linear relations between the water concentration in Fo90 olivine, the elastic moduli and their pressure derivatives, which were then used to compute the sound velocities of Fo90 olivine with higher degrees of hydration. Even for water concentrations as high as 0.5 wt%, the sound wave velocities of hydrous and anhydrous olivines were found to be identical within uncertainties at pressures corresponding to the base of the upper mantle. Contrary to previous claims, our data suggest that water in olivine is not seismically detectable, at least for contents consistent with deep upper mantle conditions. In addition to that, our data reveal that the hydration of olivine is unlikely to be a key factor in reconciling seismic velocity and density contrasts across the 410-km discontinuity with a pyrolitic mantle.
    Description: Published
    Description: 107011
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 9
    Publication Date: 2024-05-28
    Description: The rapid decline in both quality and availability of freshwater resources on our planet necessitates their thorough assessment to ensure sustainable usage. The growing demand for water in industrial, agricultural, and domestic sectors poses significant challenges to managing both surface and groundwater resources. This study tests and proposes a hybrid evaluation approach to determine Groundwater Quality Indices (GQIs) for irrigation (IRRI), seawater intrusion (SWI), and potability (POT), finalized to the spatial distribution of groundwater suitability involving water quality indicator along with hydrogeological and socio-economic factors. Mean Decrease Accuracy (MDA) and Information Gain Ratio (IGR) were used to state the importance of chosen factors such as level of groundwater above the sea, thickness of the aquifer, land cover, distance from coastline, silt soil content, recharge, distance from river and lagoons, depth to water table from ground, distance from agricultural wells, hydraulic conductivity, and lithology for each quality index, separately. The results of both methods showed that recharge is the most important parameter for GQIIRRI and GQIPOT, while the distance from the coastline and the rivers, are the most important for GQISWI. The spatial modelling of GQIIRRI and GQIPOT in the study area has been achieved applying three machine learning (ML) algorithms: the Boosted Regression Tree (BRT), the Random Forest (RF), and the Support Vector Machine (SVM). Validation results showed that RF has the highest prediction for GQIIRRI, while the SVM model has the highest prediction for the GQIPOT index. It is worth to mention that the future utilization and testing of new algorithms could produce even better results. Finally, GQIIRRI and GQIPOT were combined and compared using two combine and overlay methods to prepare a hybrid map of multi-GQIs. The results showed that 69% of the study area is suitable for irrigation and potable use, due to both geogenic and anthropogenic activities which contribute to make some water resources unsuitable for either use. Specifically, the northern, western, and eastern portions of the study area are in the "very high and high quality" classes while the southern portion shows "very low and low quality" classes. In conclusion, the developed map and approach can serve as a practical guide for enhancing groundwater management, identifying suitable areas for various uses and pinpointing regions requiring improved management practices.
    Description: Published
    Description: 119041
    Description: JCR Journal
    Keywords: Artificial intelligence ; Groundwater suitability ; Quality index ; Vulnerability map
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 10
    Publication Date: 2024-05-27
    Description: In this paper we employ a combination of gravity and hydrologic data to constrain a hydraulic model of the Škocjan Caves, an allogenic dominated karstic system in Slovenia. The gravity time-series recorded by a spring-based gravimeter, are carefully analyzed to remove tidal and non-tidal effects and unveil the local hydrologic contribution, which is influenced by the temporary accumulation of water in the cave system during the flood events of the Reka river. We make use of a combined analysis of three large flood events with peak river discharge of about 200, 230 and 300 m3/s, that caused significant water level and gravity variations sensed by the pressure transducer and by the gravimeter. By the integration of hydraulic modelling we study the different coupled gravimetric-hydrologic responses to these flood events: we show that, depending on the peak discharge and duration of the event, different flow conditions are present in the cave system. In addition to the information provided by the pressure transducer, the gravimeter is sensitive to the flow dynamics in a different sector of the cave due to the choice of its location; this configuration helps to better constrain the hydraulic model. Moreover, we find that the autogenic recharge by percolating water can significantly affect the gravity time-series and must be considered in related models. By inclusion of both the hydraulic model outcomes and of the modelling of the autogenic recharge, we are able to better explain the gravity transients during the two smaller magnitude events. In particular, during such events the autogenic contribution produces a transient gravity signal, which is about 4 times larger than the allogenic one, while during the largest flood the allogenic contribution drastically overcomes the autogenic effect by a factor 20. By discussing this case, we prove the potential of terrestrial gravity observation to depict the hydro-dynamics of these complex karstic systems as well as the potential of gravimetry to remotely monitor these storage units.
    Description: Published
    Description: 130453
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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