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  • 1
    Publikationsdatum: 2024-05-16
    Beschreibung: We create a deep neural network based approach for the geospatial predicition of total organic carbon percentages in marine sediments. The code in the repository includes jupyter notebooks and python files to pre-process the data, train the models and post-process the outputs.
    Materialart: Software , NonPeerReviewed
    Standort Signatur Erwartet Verfügbarkeit
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  • 2
    Publikationsdatum: 2024-05-16
    Beschreibung: Misapplication of Ulva epithets in GenBank has led to confusion in the scientific literature and community. To solve some of the problems, targeted DNA sequencing of plastid encoded rbc L gene amplicons or high-throughput sequencing was performed on all blade-forming Ulva type specimens from the northeast Pacific. Recently collected specimens from at or near type localities were also analyzed for some taxa. Based on these genetic analyses, we confirmed currently recognized species: U. californica , with U. angusta and U. scagelii as heterotypic synonyms, U. stenophylla , U. taeniata , and U. tanneri . Ulva dactylifera , currently considered a synonym of U. taeniata based on morpho-anatomy, is recognized as a distinct species, as is U. expansa whose type specimen was sequenced in 2018. All but two of the ITS, rbc L and tuf A sequences in GenBank that were labeled U. californica were correctly named, in contrast to U. taeniata , for which only one of 14 sequences was correctly labeled. These results show that DNA sequencing of Ulva type specimens is essential for the correct application of names.
    Materialart: Article , PeerReviewed
    Format: text
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  • 3
    Publikationsdatum: 2024-05-16
    Beschreibung: DNA sequences were obtained from 32 blade-forming Ulva specimens collected in 2018 and 2019 from four islands in the Galápagos Archipelago: Fernandina, Floreana, Isabela and San Cristóbal. The loci sequenced were nuclear encoded ITS and plastid encoded rbc L and tuf A, all recognized as barcode markers for green algae. Four species were found, Ulva adhaerens , U. lactuca , U. ohnoi and U. tanneri , all of which have had their type specimens sequenced, ensuring the correct application of these names. Only one of these, U. lactuca , was reported historically from the archipelago. Ulva adhaerens was the species most commonly collected and widely distributed, occurring on all four islands. Previously known only from Japan and Korea, this is the first report of U. adhaerens from the southeast Pacific Ocean. Ulva ohnoi was collected on three islands, Isabela, Floreana, and San Cristóbal, and U. lactuca only on the last two. Ulva tanneri is a diminutive, 1–2 cm tall, high intertidal species that is easily overlooked, but likely far more common than the one specimen that was collected. This study of blade-forming Ulva species confirms that a concerted effort, using DNA sequencing, is needed to document the seaweed flora of the Galápagos Archipelago.
    Materialart: Article , PeerReviewed
    Format: text
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  • 4
    Publikationsdatum: 2024-05-16
    Beschreibung: The 2007 flora “Green Seaweeds of Britain and Ireland” did not present the molecular data underpinning the Ulvaceae treatment, mostly ITS sequences. Subsequently, names have changed as type material of Ulva species is sequenced and intensive sampling with DNA barcoding adds new European species. To update the Ulvaceae, we systematically sampled from 2007 to 2021, identifying specimens using various molecular markers alongside DNA from type material of four species. We show here that Ulva gigantea , based on rbc L, tuf A and ITS sequences of its holotype, is assigned to Ulva compressa , as is the lectotype of Ulva curvata . Ulva gigantea sensu GenBank and Ulva pseudocurvata are conspecific. The correct name is U. pseudocurvata based on rbc L sequences of the lectotype. Two species of monostromatic Ulvaceae were included in the 2007 flora, but we show that both of them and all earlier British monostromatic collections represent Ulvaria splendens , a species originally described from Alaska. Analysis of two rbc L amplicons of the Ulva sordida lectotype shows that it is conspecific with Ulvaria splendens . Our first genuine collections of Ulvaria obscura from SW England and SW Wales correspond to topotype material from the Bay of Biscay, recent samples from Galicia and unpublished tuf A sequences from Britanny.
    Materialart: Article , PeerReviewed
    Format: text
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  • 5
    Publikationsdatum: 2024-05-16
    Beschreibung: Highlights • δ13C and δ18O profiles increase from exterior to interior until reaching a plateau. • Primary Layer δ13C reflects the δ13C of the Dissolved Inorganic Carbon. • In high pCO2 experiments, δ13C and δ18O closer to equilibrium fields. • Brachiopods grow according to an incremental growth model. Abstract Brachiopod shells are ubiquitous since the Early Cambrian up to now. As they secrete a shell made of low-magnesium calcite, more resistant to diagenesis than biocarbonates richer in Mg, their geochemical signatures are generally considered a powerful tool for paleo-environmental and paleo-climatic reconstructions. However, gaps in knowledge still remain on the underlying controls of the shell chemistry, in particular at a high spatial resolution. In this study, in situ oxygen and carbon isotope measurements by SIMS (Secondary Ion Mass Spectrometry) were performed in brachiopod shells of the cold-temperate water species Magellania venosa, constituted of a primary and a secondary layer. The individual specimens studied here grew under controlled conditions mimicking the natural environment and in experiments under low-pH (high pCO2) and high-temperature conditions. Transversal carbon and oxygen profiles showed a “brachiopod pattern” typical of extant two-layered brachiopods, with the primary layer depleted in 18O and 13C relative to equilibrium and the secondary layer showing a gradual increasing trend until reaching a near-equilibrium plateau. Overall, shells cultured at low pH were found to have δ18O and δ13C values closer to equilibrium when compared to shells from the control experiment. These near-equilibrium values may reflect a decrease in shell precipitation rate, leading to less kinetic effects, and/or a more rapid kinetics for the equilibration between DIC species and water. By close pairing of seawater δ18O and δ13C to that of shell microstructure, our study enables us to derive layer-specific C and O enrichment factors, which show the extent of pH and temperature effects superimposed on the seawater δ18O and DIC δ13C signal inherited. Finally, we show that during brachiopod shell growth, newly precipitated calcite is added to the calcite already existing, thus empirically validating the conceptual accretionary growth model proposed by Ackerly (1989).
    Materialart: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 6
    Publikationsdatum: 2024-05-16
    Beschreibung: Species classified in the genus Ulva are important foundational marine primary producers distributed worldwide. These species are particularly abundant and diverse through the northwest Pacific (NWP) where they experience marked latitudinal gradients of environmental heterogeneity. It is unclear, however, to what extent such dynamic conditions can modulate phenotypic and genetic patterns in these organisms, potentially reflecting the influence of historical and contemporary biotic and abiotic factors. Here, we assessed inter- and intra-specific genetic patterns of Ulva species through the NWP using plastid rbc L and tuf A gene sequences. Although we initially targeted Ulva australis based on morphological identification, we recovered eight Ulva genetic entities masked by morphological similarities. Except for the Ulva linza–procera–prolifera and U. lactuca–reticulata complexes, six of these genetic entities were recovered as individual species (i.e., U. australis , U. ohnoi , U. californica , U. compressa , U. lacinulata , and U. arasakii ), and showed biogeographic patterns likely explained by clines in sea surface temperature and ocean current dispersal. At intra-specific level, all the genetic entities showed low genetic variation and divergence based on rbc L (0–0.3 %) and tuf A (0–0.9 %) data. Our results provide insights regarding intra- and inter-specific genetic patterns characterizing morphologically similar Ulva species through the NWP. However, further studies are needed to understand the mechanisms underpinning such patterns and the associated ecological and evolutionary implications.
    Materialart: Article , PeerReviewed
    Format: text
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  • 7
    Publikationsdatum: 2024-05-16
    Beschreibung: 02.11.2023 – 13.11.2023 Kiel (Germany) - Kiel (Germany) Seepraktikum 23-UHH
    Materialart: Report , NonPeerReviewed
    Format: text
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  • 8
    Publikationsdatum: 2024-05-16
    Beschreibung: Research cruise SO298 with RV SONNE was sailed in the period April to June 2023 in the Equatorial Pacific Ocean (EPO) from Guayaquil (Ecuador) to Townsville (Australia), with a focus on trace element biogeochemistry and chemical oceanography but also including physical and biological oceanographic components. The research topic of the cruise was to determine in detail the distributions, sources and sinks of trace elements and their isotopes (TEIs) in the water column along a zonal section in one of the biogeochemically least studied ocean regions on earth. We aimed to investigate the biogeochemical cycling of TEIs, and their interactions with surface ocean productivity and the carbon and nitrogen cycles (incl. N2 fixation), given that some TEIs act as micronutrients. The findings will have global significance for understanding the chemical environment in which ecosystems operate. The supply pathways of TEIs to the EPO from ocean boundaries including the atmosphere (dust and rain), continents (mainly Asian rivers), sediments (on continental shelves/slopes of the Indonesian Island Arcs), and ocean crust (hydrothermalism) were investigated. The TEI transport within water masses was determined with a focus on the equatorial eastward flow of Asian shelf derived TEIs in the Equatorial Undercurrent and the deep inflow of Southern Ocean waters in the western EPO. The TEI transport assessment along the cruise track will allow a more reliable use of particular TEIs as paleo circulation proxies. The cruise is officially part of the GEOTRACES program.
    Materialart: Report , NonPeerReviewed
    Format: text
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  • 9
    Publikationsdatum: 2024-05-16
    Beschreibung: Abstract
    Beschreibung: This dataset accompanying the MOOC on soil applications contains an airborne hyperspectral HySpex image over the study site Demmin in Northern Germany which was recorded in October 2015. The surrounding area of Demmin is characterized by its glacial past and is largely used for agriculture. Here you can find relics of the ice age such as kettle holes - small, completely closed hollow shapes whose formation is attributed to the burial and subsequent thawing of an ice lens. Mostly overgrown nowadays by vegetation, SOC accumulates in these areas and higher contents are measured. The image dataset is fully pre-processed – all non-soil pixels are masked, the spectra were smoothed using a Savitzky-Golay Filter and transformed to first derivatives – and provided in BSQ format. In addition to the HySpex image, this dataset contains a point data shapefile with 27 sampling locations, as well as information on the soil organic carbon (SOC) contents [g/kg]. The dataset is made publicly available as part of the Massive Open Online Course (MOOC) "Beyond the Visible - Imaging Spectroscopy for Soil Applications ", available from Spring 2023. Guidance on how to derive quantitative soil maps (SOC content) using the EnMAP-Box (QGIS plugin) are provided as videos at the HYPERedu YouTube channel, the soil MOOC course pages and the regression workflow documentation.
    Beschreibung: Other
    Beschreibung: HYPERedu is an education initiative within the Environmental Mapping and Analysis Program (EnMAP), a German hyperspectral satellite mission that aims at monitoring and characterizing the Earth’s environment on a global scale. EnMAP serves to measure and model key dynamic processes of the Earth’s ecosystems by extracting geochemical, biochemical and biophysical variables, which provide information on the status and evolution of various terrestrial and aquatic ecosystems.
    Schlagwort(e): hyperspectral ; hyperspectral imagery ; imaging spectroscopy ; HySpex airborne imagery ; Demmin ; Germany ; soil ; SOC ; Earth Remote Sensing Instruments 〉 Passive Remote Sensing 〉 Spectrometers/Radiometers ; EARTH SCIENCE 〉 SPECTRAL/ENGINEERING
    Materialart: Dataset , Dataset
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  • 10
    Publikationsdatum: 2024-05-16
    Beschreibung: Abstract
    Beschreibung: The dataset contains a subset of an airborne hyperspectral HyMap image over the Cabo de Gata-Nίjar Natural Park in Spain from 15.06.2005, and soil wet chemistry data based on in-situ soil sampling. The Cabo de Gata-Nίjar Natural Park is a semi-arid mediterranean area in Southern Spain, sparsely populated and with a range of landscape patterns. The soils in this area are developed on volcanic and carbonatic bedrocks and are highly variable in their textural and mineralogical composition, offering interesting spectral variability. The airborne survey was acquired during a DLR / HyVista HyEurope campaign. The image dataset is fully processed for atmospheric and geometric correction with PARGE and ATCOR and is provided as orthorectified reflectance in BSQ format. Spatial resolution is 5 m and spectral coverage is 0.45-2.45 μm with 12-17 nm spectral sampling. In addition to the HyMap imagery, this dataset contains two soil reference datasets as CSV files, namely in-situ data for clay content and iron content. The dataset is made publicly available as part of the Massive Open Online Course (MOOC) "Beyond the Visible - Imaging Spectroscopy for Soil Applications ", available from Spring 2024. Guidance on how to derive semiquantitative and quantitative soil maps (clay and iron content) using the EnMAP-Box (QGIS plugin) EnSoMAP tool are provided as videos at the HYPERedu YouTube channel (https://www.youtube.com/@HYPERedu_GFZ/playlists) and the soil MOOC course pages (https://eo-college.org/courses/beyond-the-visible-imaging-spectroscopy-for-soil-applications/).
    Beschreibung: Other
    Beschreibung: HYPERedu is an education initiative within the Environmental Mapping and Analysis Program (EnMAP), a German hyperspectral satellite mission that aims at monitoring and characterizing the Earth’s environment on a global scale. EnMAP serves to measure and model key dynamic processes of the Earth’s ecosystems by extracting geochemical, biochemical and biophysical variables, which provide information on the status and evolution of various terrestrial and aquatic ecosystems.
    Schlagwort(e): hyperspectral ; hyperspectral imagery ; imaging spectroscopy ; HyMap airborne imagery ; Cabo de Gata-Nίjar ; Spain ; Mediterranean ; soil ; clay ; DEM ; Earth Remote Sensing Instruments 〉 Passive Remote Sensing 〉 Spectrometers/Radiometers ; EARTH SCIENCE 〉 SPECTRAL/ENGINEERING
    Materialart: Dataset , Dataset
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