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  • American Institute of Physics (AIP)
  • Nature Publishing Group
  • Wiley-Blackwell
  • 2015-2019  (26,364)
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Year
  • 1
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    Lateglacial to Holocene trace element record (Ba, Mg, Sr) from Corchia Cave (Apuan Alps, central Italy): paleoenvironmental implications (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2021-06-16
    Description: In this study, Mg/Ca, Sr/Ca and Ba/Ca ratios in a Lateglacial to Holocene stalagmite (CC26) from Corchia Cave (central Italy) are compared with stable isotope data to define palaeohydrological changes. For most of the record, the trace element ratios show small absolute variability but similar patterns, which are also consistent with stable isotope variations. Higher trace element-to-calcium values are interpreted as responses to decreasing moisture, inducing changes in the residence time of percolation, producing prior calcite precipitation and/or variations in the hydrological routing. Statistically meaningful levels of covariability were determined using anomalies of Mg/Ca, d18O and d13C. Combining these three time series into a single ‘palaeomoisture-trend’ parameter, we highlight several events of reduced moisture (ca. 8.9–8.4, 6.2, 4.2, 3.1 and 2.0 ka), a humid period between ca. 7.9 and 8.3 ka and other shorter-term wet events at ca. 5.8, 5.3 and 3.7 ka. Most of these events can be correlated with climate changes inferred from other regional studies. For both extremities of the record (i.e. before ca. 12.4 ka and after ca. 0.5 ka) Mg/Ca and Sr/Ca are anti-correlated and show the greatest amplitude of values, a likely explanation for which involves aragonite and/or gypsum precipitation (the latter derived from pyrite oxidation) above the CC26 drip point.
    Description: Published
    Description: 381–392
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: restricted
    Keywords: central Italy; Corchia Cave; Holocene; speleothems; trace elements ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 2
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    So close, so different: geothermal flux shapes divergent soil microbial communities at neighbouring sites (2016)
    Wiley-Blackwell
    Details
    Publication Date: 2021-06-14
    Description: This study is focused on the (micro)biogeochemical features of two close geothermal sites (FAV1 and FAV2), both selected at the main exhalative area of Pantelleria Island, Italy. A previous biogeochemical survey revealed high CH4 consumption and the presence of a diverse community of methanotrophs at FAV2 site, whereas the close site FAV1 was apparently devoid of methanotrophs and recorded no CH4 consumption. Next-Generation Sequencing (NGS) techniques were applied to describe the bacterial and archaeal communities which have been linked to the physicochemical conditions and the geothermal sources of energy available at the two sites. Both sites are dominated by Bacteria and host a negligible component of ammonia-oxidizing Archaea (phylum Thaumarchaeota). The FAV2 bacterial community is characterized by an extraordinary diversity of methanotrophs, with 40% of the sequences assigned to Methylocaldum, Methylobacter (Gammaproteobacteria) and Bejerickia (Alphaproteobacteria); conversely, a community of thermo-acidophilic chemolithotrophs (Acidithiobacillus, Nitrosococcus) or putative chemolithotrophs (Ktedonobacter) dominates the FAV1 community, in the absence of methanotrophs. Since physical andchemical factors of FAV1, such as temperature and pH, cannot be considered limiting for methanotrophy, it is hypothesized that the main limiting factor for methanotrophs could be high NH4+ concentration. At the same time, abundant availability of NH4+ and other high energy electron donors and acceptors determined by the hydrothermal flux in this site create more energetically favourable conditions for chemolithotrophs that outcompete methanotrophs in non-nitrogen-limited soils.
    Description: Published
    Description: 150–162
    Description: 4V. Vulcani e ambiente
    Description: JCR Journal
    Description: restricted
    Keywords: geothermal soils ; geomicrobiology ; chemolithotrophs ; methanotrophs ; Pantelleria ; 04. Solid Earth::04.04. Geology::04.04.12. Fluid Geochemistry
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 3
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    Systemic seismic risk assessment of road networks in urban areas (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2021-03-18
    Description: This article presents an integrated approach for the probabilistic systemic risk analysis of a road network considering spatial seismic hazard with correlation of ground motion intensities, vulnerability of the network components, and the effect of interactions within the network, as well as, between roadway components and built environment to the network functionality. The system performance is evaluated at the system level through a global connectivity performance indicator, which depends on both physical damages to its components and induced functionality losses due to interactions with other systems. An object-oriented modeling paradigm is used, where the complex problem of several interacting systems is decomposed in a number of interacting objects, accounting for intra- and interdependencies between and within systems. Each system is specified with its components, solving algorithms, performance indicators and interactions with other systems. The proposed approach is implemented for the analysis of the road network in the city of Thessaloniki (Greece) to demonstrate its applicability. In particular, the risk for the road network in the area is calculated, specifically focusing on the short-term impact of seismic events (just after the earthquake). The potential of road blockages due to collapses of adjacent buildings and overpass bridges is analyzed, trying to individuate possible criticalities related to specific components/subsystems. The application can be extended based on the proposed approach, to account for other interactions such as failure of pipelines beneath the road segments, collapse of adjacent electric poles, or malfunction of lighting and signaling systems due to damage in the electric power network.
    Description: Published
    Description: 524–540
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: Systemic vulnerability ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 4
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    Ground structure imaging by inversions of Rayleigh wave ellipticity: sensitivity analysis and application to European strong-motion sites (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2020-12-14
    Description: The knowledge of the local soil structure is important for the assessment of seismic hazards. A widespread, but time-consuming technique to retrieve the parameters of the local underground is the drilling of boreholes. Another way to obtain the shear wave velocity profile at a given location is the inversion of surface wave dispersion curves. To ensure a good resolution for both superficial and deeper layers, the used dispersion curves need to cover a wide frequency range. This wide frequency range can be obtained using several arrays of seismic sensors or a single array comprising a large number of sensors. Consequently, these measurements are time-consuming. A simpler alternative is provided by the use of the ellipticity of Rayleigh waves. The frequency dependence of the ellipticity is tightly linked to the shear wave velocity profile. Furthermore, it can be measured using a single seismic sensor. As soil structures obtained by scaling of a given model exhibit the same ellipticity curve, any inversion of the ellipticity curve alone will be ambiguous. Therefore, additional measurements which fix the absolute value of the shear wave velocity profile at some points have to be included in the inversion process. Small-scale spatial autocorrelation measurements or MASW measurements can provide the needed data. Using a theoretical soil structure, we show which parts of the ellipticity curve have to be included in the inversion process to get a reliable result and which parts can be omitted. Furthermore, the use of autocorrelation or high-frequency dispersion curves will be highlighted. The resulting guidelines for inversions including ellipticity data are then applied to real data measurements collected at 14 different sites during the European NERIES project. It is found that the results are in good agreement with dispersion curve measurements. Furthermore, the method can help in identifying the mode of Rayleigh waves in dispersion curve measurements.
    Description: Published
    Description: 207-229
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: Inverse theory Surface waves and free oscillations Site effects Computational seismology Wave propagation ; 04. Solid Earth::04.02. Exploration geophysics::04.02.06. Seismic methods
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
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    Stable isotopes of pedogenic carbonates from the Somma–Vesuvius area, southern Italy, over the past 18 kyr: palaeoclimatic implications (2016)
    Wiley-Blackwell
    Details
    Publication Date: 2021-04-07
    Description: Stable isotopes were measured in the carbonate and organic matter of palaeosols in the Somma–Vesuvius area, southern Italy in order to test whether they are suitable proxy records for climatic and ecological changes in this area during the past 18000 yr. The ages of the soils span from ca. 18 to ca. 3 kyr BP. Surprisingly, the Last Glacial to Holocene climate transition was not accompanied by significant change in d18O of pedogenic carbonate. This could be explained by changes in evaporation rate and in isotope fractionation between water and precipitated carbonate with temperature, which counterbalanced the expected change in isotope composition of meteoric water. Because of the rise in temperature and humidity and the progressive increase in tree cover during the Holocene, the Holocene soil carbonates closely reflect the isotopic composition of meteoric water. A cooling of about 2°C after the Avellino eruption (3.8 ka) accounts for a sudden decrease of about 1‰ in d18O of pedogenic carbonate recorded after this eruption. The d13C values of organic matter and pedogenic carbonate covary, indicating an effective isotope equilibrium between the organic matter, as the source of CO2, and the pedogenic carbonate. Carbon isotopes suggest prevailing C3 vegetation and negligible mixing with volcanogenic or atmospheric CO2.
    Description: Published
    Description: 813-824
    Description: 1V. Storia e struttura dei sistemi vulcanici
    Description: JCR Journal
    Description: restricted
    Keywords: stable isotope ; palaeosols ; Somma–Vesuvius ; palaeoclimate ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
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    A performance-based framework for adaptive seismic aftershock risk assessment (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2021-06-22
    Description: Operative seismic aftershock risk forecasting can be particularly useful for rapid decision-making in the presence of an ongoing sequence. In such a context, limit state first-excursion probabilities (risk) for the forecasting interval (a day) can represent the potential for progressive state of damage in a structure. This work lays out a performance-based framework for adaptive aftershock risk assessment in the immediate post-mainshock environment. A time-dependent structural performance variable is adopted in order to measure the cumulative damage in a structure. A set of event-dependent fragility curves as a function of the first-mode spectral acceleration for a prescribed limit state is calculated by employing back-to-back non- linear dynamic analyses. An epidemic-type aftershock sequence model is employed for estimating the spatio-temporal evolution of aftershocks. The event-dependent fragility curves for a given limit state are then integrated together with the probability distribution of aftershock spectral acceleration based on the epidemic-type aftershock sequence aftershock hazard. The daily probability of limit state first-excursion is finally calculated as a weighted combination of the sequence of limit state probabilities conditioned on the num- ber of aftershocks. As a numerical example, daily aftershock risk is calculated for the L’Aquila 2009 aftershock sequence (central Italy). A representative three-story reinforced concrete frame with infill panels, which has cyclic strength and stiffness degradation, is used in order to evaluate the progressive damage. It is observed that the proposed framework leads to a sound forecasting of limit state first-excursion in the structure for two limit states of significant damage and near collapse. Copyright © 2014 John Wiley & Sons, Ltd.
    Description: Published
    Description: 2179–2197
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: reserved
    Keywords: aftershock ; time-dependent reliability ; seismic risk ; etas modeling ; 04. Solid Earth::04.06. Seismology::04.06.11. Seismic risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
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    Simulated leakage of high pCO2 water negatively impacts bivalve dominated infaunal communities from the Western Baltic Sea (2016)
    Nature Publishing Group
    In:  EPIC3Scientific Reports, Nature Publishing Group, 6(31447)
    Details
    Publication Date: 2016-11-24
    Description: Carbon capture and storage is promoted as a mitigation method counteracting the increase of atmospheric CO2 levels. However, at this stage, environmental consequences of potential CO2 leakage from sub-seabed storage sites are still largely unknown. In a 3-month-long mesocosm experiment, this study assessed the impact of elevated pCO2 levels (1,500 to 24,400 µatm) on Cerastoderma edule dominated benthic communities from the Baltic Sea. Mortality of C. edule was significantly increased in the highest treatment (24,400 µatm) and exceeded 50%. Furthermore, mortality of small size classes (0-1 cm) was significantly increased in treatment levels ≥6,600 µatm. First signs of external shell dissolution became visible at ≥1,500 µatm, holes were observed at 〉6,600 µatm. C. edule body condition decreased significantly at all treatment levels (1,500-24,400 µatm). Dominant meiofauna taxa remained unaffected in abundance. Densities of calcifying meiofauna taxa (i.e. Gastropoda and Ostracoda) decreased in high CO2 treatments (〉6,600 µatm), while the non - calcifying Gastrotricha significantly increased in abundance at 24,400 µatm. In addition, microbial community composition was altered at the highest pCO2 level. We conclude that strong CO2 leakage can alter benthic infauna community composition at multiple trophic levels, likely due to high mortality of the dominant macrofauna species C. edule.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 8
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    Strong geologic methane emissions from discontinuous terrestrial permafrost in the Mackenzie Delta, Canada (2017)
    Nature Publishing Group
    In:  EPIC3Scientific Reports, Nature Publishing Group, 7(5828)
    Details
    Publication Date: 2017-10-10
    Description: Arctic permafrost caps vast amounts of old, geologic methane (CH4) in subsurface reservoirs. Thawing permafrost opens pathways for this CH4 to migrate to the surface. However, the occurrence of geologic emissions and their contribution to the CH4 budget in addition to recent, biogenic CH4 is uncertain. Here we present a high-resolution (100 m × 100 m) regional (10,000 km²) CH4 flux map of the Mackenzie Delta, Canada, based on airborne CH4 flux data from July 2012 and 2013. We identify strong, likely geologic emissions solely where the permafrost is discontinuous. These peaks are 13 times larger than typical biogenic emissions. Whereas microbial CH4 production largely depends on recent air and soil temperature, geologic CH4 was produced over millions of years and can be released year-round provided open pathways exist. Therefore, even though they only occur on about 1% of the area, geologic hotspots contribute 17% to the annual CH4 emission estimate of our study area. We suggest that this share may increase if ongoing permafrost thaw opens new pathways. We conclude that, due to permafrost thaw, hydrocarbon-rich areas, prevalent in the Arctic, may see increased emission of geologic CH4 in the future, in addition to enhanced microbial CH4 production.
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
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    Chapter 16 Harmful Algal Species Fact Sheets: Alexandrium (2018)
    Wiley-Blackwell
    In:  EPIC3Harmful Algal Blooms: A Compendium Desk Reference, Wiley-Blackwell, 12 p., pp. 563-574, ISBN: 978-1-118-99465-8
    Details
    Publication Date: 2018-06-28
    Description: The genus Alexandrium (Halim) is perhaps the most intensively studied among toxic marine dinoflagellates. This is largely attributable to the devastating consequences of toxigenic blooms of this genus, with human poisonings from contaminated seafood, primarily from shellfish and more rarely from finfish; socio–economic losses to the aquaculture and fisheries industries; marine faunal mortalities; and food web disruptions common in coastal waters throughout the world. Members of this genus are globally distributed from the Arctic to the tropics, and in both hemispheres from sub–polar through temperate to sub–tropical to tropicalwaters. At least four distinct groups of marine phycotoxins are associated with various Alexandrium species, along with poorly characterized bioactive compounds (allelochemicals) that may affect species interactions among the plankton. According to the most recent iteration of the IOC–UNESCO reference list of toxic microalgae, there are now more than 30 recognized morphological species of Alexandrium, posing a daunting challenge for risk assessment and accurate identification in toxic phytoplankton monitoring programs.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 10
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    Spatio-temporal variability of processes across Antarctic ice-bed-ocean interfaces (2018)
    Nature Publishing Group
    In:  EPIC3Nature Communications, Nature Publishing Group, 9, ISSN: 2041-1723
    Details
    Publication Date: 2018-09-20
    Description: Understanding how the Antarctic ice sheet will respond to global warming relies on knowledge of how it has behaved in the past. The use of numerical models, the only means to quantitatively predict the future, is hindered by limitations to topographic data both now and in the past, and in knowledge of how subsurface oceanic, glaciological and hydrological processes interact. Incorporating the variety and interplay of such processes, operating at multiple spatio-temporal scales, is critical to modeling the Antarctic’s system evolution and requires direct observations in challenging locations. As these processes do not observe disciplinary boundaries neither should our future research.
    Repository Name: EPIC Alfred Wegener Institut
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  • 11
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    Universal molecular structures in natural dissolved organic matter (2018)
    Nature Publishing Group
    In:  EPIC3Nature Communication, Nature Publishing Group, 9(3178), ISSN: 2041-1723
    Details
    Publication Date: 2019-02-13
    Description: Natural dissolved organic matter (DOM) comprises a broad range of dissolved organic molecules in aquatic systems and is among the most complex molecular mixtures known. Here we show, by comparing detailed structural fingerprints of individual molecular formulae in DOM from a set of four marine and one freshwater environments, that a major component of DOM is molecularly indistinguishable in these diverse samples. Molecular conformity was not only apparent by the co-occurrence of thousands of identical molecular formulae, but also by identical structural features of those isomers that collectively represent a molecular formula. The presence of a large pool of compounds with identical structural features in DOM is likely the result of a cascade of degradation processes or common synthetic pathways that ultimately lead to the formation of a universal background, regardless of origin and history of the organic material. This novel insight impacts our understanding of long-term turnover of DOM as the underlying mechanisms are possibly universal.
    Repository Name: EPIC Alfred Wegener Institut
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  • 12
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    Permafrost is warming at a global scale (2019)
    Nature Publishing Group
    In:  EPIC3Nature Communications, Nature Publishing Group, 10(1), pp. 1-11, ISSN: 2041-1723
    Details
    Publication Date: 2021-01-12
    Description: Permafrost warming has the potential to amplify global climate change, because when frozen sediments thaw it unlocks soil organic carbon. Yet to date, no globally consistent assessment of permafrost temperature change has been compiled. Here we use a global data set of permafrost temperature time series from the Global Terrestrial Network for Permafrost to evaluate temperature change across permafrost regions for the period since the International Polar Year (2007–2009). During the reference decade between 2007 and 2016, ground temperature near the depth of zero annual amplitude in the continuous permafrost zone increased by 0.39 ± 0.15 °C. Over the same period, discontinuous permafrost warmed by 0.20 ± 0.10 °C. Permafrost in mountains warmed by 0.19 ± 0.05 °C and in Antarctica by 0.37 ± 0.10 °C. Globally, permafrost temperature increased by 0.29 ± 0.12 °C. The observed trend follows the Arctic amplification of air temperature increase in the Northern Hemisphere. In the discontinuous zone, however, ground warming occurred due to increased snow thickness while air temperature remained statistically unchanged.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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  • 13
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    Host-specific assembly of sponge-associated prokaryotes at high taxonomic ranks (2017)
    Nature Publishing Group
    In:  EPIC3Scientific Reports, Nature Publishing Group, 7(2542), ISSN: 2045-2322
    Details
    Publication Date: 2019-03-07
    Description: Sponges (Porifera) are abundant and diverse members of benthic filter feeding communities in most marine ecosystems, from the deep sea to tropical reefs. A characteristic feature is the associated dense and diverse prokaryotic community present within the sponge mesohyl. Previous molecular genetic studies revealed the importance of host identity for the community composition of the sponge-associated microbiota. However, little is known whether sponge host-specific prokaryotic community patterns observed at 97% 16S rRNA gene sequence similarity are consistent at high taxonomic ranks (from genus to phylum level). In the present study, we investigated the prokaryotic community structure and variation of 24 sponge specimens (seven taxa) and three seawater samples from Sweden. Results show that the resemblance of prokaryotic communities at different taxonomic ranks is consistent with patterns present at 97% operational taxonomic unit level.
    Repository Name: EPIC Alfred Wegener Institut
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  • 14
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    The role of stratospheric ozone for Arctic-midlatitude linkages (2019)
    Nature Publishing Group
    In:  EPIC3Scientific Reports, Nature Publishing Group, 9(7962), ISSN: 2045-2322
    Details
    Publication Date: 2019-06-11
    Description: Arctic warming was more pronounced than warming in midlatitudes in the last decades making this region a hotspot of climate change. Associated with this, a rapid decline of sea-ice extent and a decrease of its thickness has been observed. Sea-ice retreat allows for an increased transport of heat and momentum from the ocean up to the tropo- and stratosphere by enhanced upward propagation of planetary-scale atmospheric waves. In the upper atmosphere, these waves deposit the momentum transported, disturbing the stratospheric polar vortex, which can lead to a breakdown of this circulation with the potential to also significantly impact the troposphere in mid- to late-winter and early spring. Therefore, an accurate representation of stratospheric processes in climate models is necessary to improve the understanding of the impact of retreating sea ice on the atmospheric circulation. By modeling the atmospheric response to a prescribed decline in Arctic sea ice, we show that including interactive stratospheric ozone chemistry in atmospheric model calculations leads to an improvement in tropo-stratospheric interactions compared to simulations without interactive chemistry. This suggests that stratospheric ozone chemistry is important for the understanding of sea ice related impacts on atmospheric dynamics.
    Repository Name: EPIC Alfred Wegener Institut
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  • 15
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    Global analysis reveals climatic controls on the oxygen isotope composition of cave drip water (2019)
    Nature Publishing Group
    In:  EPIC3Nature Communications, Nature Publishing Group, 10(1), pp. 1-7, ISSN: 2041-1723
    Details
    Publication Date: 2019-07-15
    Description: The oxygen isotope composition of speleothems is a widely used proxy for past climate change. Robust use of this proxy depends on understanding the relationship between precipitation and cave drip water δ18O. Here, we present the first global analysis, based on data from 163 drip sites, from 39 caves on five continents, showing that drip water δ18O is most similar to the amount-weighted precipitation δ18O where mean annual temperature (MAT) is 〈 10 °C. By contrast, for seasonal climates with MAT 〉 10 °C and 〈 16 °C, drip water δ18O records the recharge-weighted δ18O. This implies that the δ18O of speleothems (formed in near isotopic equilibrium) are most likely to directly reflect meteoric precipitation in cool climates only. In warmer and drier environments, speleothems will have a seasonal bias toward the precipitation δ18O of recharge periods and, in some cases, the extent of evaporative fractionation of stored karst water.
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
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    Establishing anaerobic hydrocarbon-degrading enrichment cultures of microorganisms under strictly anoxic conditions (2018)
    Nature Publishing Group
    In:  EPIC3Nature Protocols, Nature Publishing Group, 13(6), pp. 1310-1330, ISSN: 1754-2189
    Details
    Publication Date: 2020-02-23
    Description: Traditionally, the description of microorganisms starts with their isolation from an environmental sample. Many environmentally relevant anaerobic microorganisms grow very slowly, and often they rely on syntrophic interactions with other microorganisms. This impedes their isolation and characterization by classic microbiological techniques. We developed and applied an approach for the successive enrichment of syntrophic hydrocarbon-degrading microorganisms from environmental samples. We collected samples from microbial mat-covered hydrothermally heated hydrocarbon-rich sediments of the Guaymas Basin and mixed them with synthetic mineral medium to obtain sediment slurries. Supplementation with defined substrates (i.e., methane or butane), incubation at specific temperatures, and a regular maintenance procedure that included the measurement of metabolic products and stepwise dilutions enabled us to establish highly active, virtually sediment-free enrichment cultures of actively hydrocarbon-degrading communities in a 6-months to several-years' effort. Using methane as sole electron donor shifted the originally highly diverse microbial communities toward defined mixed cultures dominated by syntrophic consortia consisting of anaerobic methane-oxidizing archaea (ANME) and different sulfate-reducing bacteria. Cultivation with butane at 50 °C yielded consortia of archaea belonging to Candidatus Syntrophoarchaeum and Candidatus Desulfofervidus auxilii partner bacteria. This protocol also describes sampling for further molecular characterization of enrichment cultures by fluorescence in situ hybridization (FISH), and transcriptomics and metabolite analyses, which can provide insights into the functioning of hydrocarbon metabolism in archaea and resolve important mechanisms that enable electron transfer to their sulfate-reducing partner bacteria.
    Repository Name: EPIC Alfred Wegener Institut
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  • 17
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    FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration (2018)
    Nature Publishing Group
    In:  EPIC3npj Science of Food, Nature Publishing Group, 2(23), pp. 1-10
    Details
    Publication Date: 2020-02-12
    Description: The construction of high capacity data sharing networks to support increasing government and commercial data exchange has highlighted a key roadblock: the content of existing Internet-connected information remains siloed due to a multiplicity of local languages and data dictionaries. This lack of a digital lingua franca is obvious in the domain of human food as materials travel from their wild or farm origin, through processing and distribution chains, to consumers. Well defined, hierarchical vocabulary, connected with logical relationships—in other words, an ontology—is urgently needed to help tackle data harmonization problems that span the domains of food security, safety, quality, production, distribution, and consumer health and convenience. FoodOn (http://foodon.org) is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world. FoodOn addresses food product terminology gaps and supports food traceability. Focusing on human and domesticated animal food description, FoodOn contains animal and plant food sources, food categories and products, and other facets like preservation processes, contact surfaces, and packaging. Much of FoodOn’s vocabulary comes from transforming LanguaL, a mature and popular food indexing thesaurus, into a World Wide Web Consortium (W3C) OWL Web Ontology Language-formatted vocabulary that provides system interoperability, quality control, and software-driven intelligence. FoodOn compliments other technologies facilitating food traceability, which is becoming critical in this age of increasing globalization of food networks.
    Repository Name: EPIC Alfred Wegener Institut
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  • 18
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    Impacts of Climate Change on the Southern Ocean (2017)
    Wiley-Blackwell
    In:  EPIC3Climate Change Impacts on Fisheries and Aquaculture: A Global Analysis, Climate Change Impacts on Fisheries and Aquaculture: A Global Analysis, Wiley-Blackwell, pp. 663-701, ISBN: 978-1-119-15404-4
    Details
    Publication Date: 2017-10-09
    Description: Exploitation of Southern Ocean marine resources began more than 200 years ago with the massive hunt for seals and whales. In the 1960s/70s, fisheries for finfish and krill entered Southern Ocean waters. Within a few years many fish populations were heavily overfished and dramatically depleted, and some of these stocks still did not recover. Today, fish stocks and fisheries activities are managed and monitored by the Commission for the Conservation of Antarctic Marine Living Resources (CCAMLR) which was established in 1982 to ensure sustainable exploitation and protection of the delicate marine ecosystem. Current target species include Mackerel icefish (Champsocephalus gunnari), Patagonian as well as Antarctic toothfish (Dissostichus eleginoides and D. mawsoni) and Antarctic krill (Euphausia superba). Most of these species are vulnerable to overfishing due to slow growth, late age at maturity, and rather low fecundity. This vulnerability might increase, as Southern Ocean living communities are currently also faced with alterations of their environment due to climate change, such as increasing water temperatures and decreasing sea ice. Species, including the ones targetted by fisheries, are well-adapted to their particular environmental conditions and are believed to be highly sensitive to changes because of their cold-adapted physiology, their life history traits, and their direct or indirect dependence on sea ice. The species will be exposed to several stressors at the same time, and fishing pressure, direct abiotic forcing and changes mediated via the food web might act synergistically and result in significant population declines. In particular the strongly sea ice-dependent Antarctic krill, a key species in the food web, might be adversely affected. Fish species seems to have low tolerance towards higher water temperatures and may thus, in the long run, be replaced by lower latitude species.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 19
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    Chapter 16: Harmful Algal Species Fact Sheets: Gymnodinium catenatum (2018)
    Wiley-Blackwell
    In:  EPIC3Harmful Algal Blooms: A Compendium Desk Reference, Wiley-Blackwell, 8 p., pp. 605-612, ISBN: 978-1-118-99465-8
    Details
    Publication Date: 2018-06-28
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 20
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    Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus (2017)
    Nature Publishing Group
    In:  EPIC3Nature, Nature Publishing Group, 541, pp. 536-540, ISSN: 0028-0836
    Details
    Publication Date: 2019-03-08
    Description: The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent from those of temperate diatoms (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.
    Repository Name: EPIC Alfred Wegener Institut
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  • 21
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    Directional resonance variations across the Pernicana Fault, Mt Etna, in relation to brittle deformation fields (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: The Pernicana Fault (PF) is the main structural element of Mt Etna and the northern boundary of a section sliding to the southeast. Observed ground motion records in the damage zone of the PF show strong variations of directional resonance in the horizontal plane. The observed resonance directions exhibit an abrupt rotation of azimuth by about 30◦ across the fault, varying from N166◦ on the north side to N139◦ on the south. We interpret the directional resonance observations in terms of changes in the kinematics and deformation fields on the opposite sides of the fault. The northern side is affected primarily by the left-lateral strike-slip movement, whereas the southern side, that is subjected also to sliding, is under a dominant extensional stress regime. Brittle deformation models based on the observed kinematic field predict different sets of fractures on the opposite sides of the fault: synthetic cleavages and extensional fractures are expected to dominate in the northern and southern sides, respectively. These two fracture fields have different orientations (N74◦ and N42◦, respectively) and both show a near-orthogonal relation (∼88◦ in the northern sector and ∼83◦ to the south) with the azimuth of the observed directional resonance. We conclude that the direction of the largest resonance motions is sensitive to and has transversal relationship with the dominant fracture orientation. The directional amplification is inferred to be produced by stiffness anisotropy of the fault damage zone, with larger seismic motions normal to the fractures.
    Description: Published
    Description: 986–996
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: Earthquake ground motions; Site effects; Wave propagation ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 22
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    Assessing annual global M6+ seismicity forecasts (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: We consider a seismicity forecast experiment conducted during the last 4 yr. At the beginning of each year, three models make a 1-yr forecast of the distribution of large earthquakes everywhere on the Earth. The forecasts are generated and the observations are collected in the Collaboratory for the Study of Earthquake Predictability (CSEP). We apply CSEP likelihood measures of consistency and comparison to see how well the forecasts match the observations, and we compare results from some intuitive reference models. These results illustrate some undesirable properties of the consistency tests: the tests can be extremely sensitive to only a few earthquakes, and yet insensitive to seemingly obvious flaws—a na ̈ıve hypothesis that large earthquakes are equally likely everywhere is not always rejected. The results also suggest that one should check the assumptions of the so-called T and W comparison tests, and we illustrate some methods to do so. As an extension of model assessment, we explore strategies to combine forecasts, and we discuss the implications for operational earthquake forecasting. Finally, we make suggestions for the next generation of global seismicity forecast experiments.
    Description: Published
    Description: 422-431
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: probabilistic forecasting ; statistical seismology ; 04. Solid Earth::04.06. Seismology::04.06.02. Earthquake interactions and probability
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  • 23
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    The hydrological signature of a seismogenic source: coseismic hydrological changes in response to the 1915 Fucino (Central Italy) earthquake (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: The M ∼ 7 1915 Fucino (Central Italy) earthquake represents one of the most destructive seismic events ever occurred in the Italian Peninsula. Several seismogenic faults have been proposed in the past decades as the source of the earthquake by means of different approaches and techniques that lead to a variety of speculations about the source mechanism and the fault location, often contrasting with one another. The 1915 earthquake produced a remarkable data set of 73 coseismic hydrological changes in the near and intermediate field that consist in variation of the flow of streams and springs, liquefaction, rise of water temperature and turbidity. In this paper, we study the coseismic water level changes induced by the 1915 earthquake in the near field to provide convincing clues on the geometry of the earthquake causative fault. We model the coseismic strain field induced by seventeen individual faults proposed through different approaches, and compare its pattern with the distribution of streamflow changes. We find: (i) clues on the most probable geometry of the earthquake causative fault. Best fits between modelled deformation and observed data are displayed by sources (derived by geological or seismological data) that share several distinctive features, as they are ∼135◦-striking, SW-dipping, 25–30-km-long normal faults located along the eastern side of the Fucino basin. These data point to the Serrone Fault and the Parasano Fault as the most likely causative structures and support the hypothesis that the coseismic ruptures observed in the field represented primary surface faulting. On the contrary, our calculations show that the Pescina Fault and the Ventrino Fault are secondary faults from the perspective of the hydrological response. Finally, one of the best scoring potential sources (from geological data) is a multifaulting system that considers the presence, in the central-western part of the basin, of fault splays synthetic and antithetic to the main seismogenic structures; therefore, we infer for these splays a possible active involvement in a 1915-like seismogenic process; (ii) evidence against a number of seismogenic structures that were previously associated with the earthquake. In particular, the plots of coseismic strain induced by sources uniquely derived by macroseismic or geodetic data prove to be inconsistent with the polarities of the hydrological signatures. Also, sources mainly characterized by reverse faulting and/or by right-lateral strike-slip component are discarded and (iii) as a final remark, we maintain that the study of the hydrological signatures of earthquake strain can offer an alternative tool in the investigation of the historical seismicity, to estimate the focal mechanism of major earthquakes capable of giving rise to a consistent data set of hydrological data.
    Description: Published
    Description: 1374-1388
    Description: 2T. Tettonica attiva
    Description: JCR Journal
    Description: restricted
    Keywords: 1915 Fucino earthquake ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous
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  • 24
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    Discriminating among distinct source models of the 1908 Messina Straits earthquake by modelling intensity data through full wavefield seismograms (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: Macroseismic intensities are the only available data for most historical earthquakes and often represent the unique source of information for crucial events in the definition of seismic hazard. In this paper, we attempt at getting insight into source characteristics by reproducing the observed intensity field. As a test case, we study the source of 1908 Messina Straits earthquake ( M W = 7.1), by testing three distinct fault models deduced from the analysis of geodeticdata.Startingfromthestaticslipdistribution,wedevelop kinematicsourcemodelsfor the investigated fault and compute full waveform synthetic seismograms in a 1-D structural model, also accounting for anelastic attenuation. Then, we convert both computed peak- ground acceleration (PGA) and peak-ground velocity (PGV) to macroseismic intensity at 100 selected sites, by means of specific empirical relations for the Italian region. By comparing the original data separately with PGA- and PGV-based intensity fields, we discriminate among the tested faults and determine the best values for the investigated kinematic parameters of the source. We also perform a misfit analysis for the best source model, in order to investigate the dependence of the results on the selected parametrization. The results of the analysis indicate that among the tested models, the one characterized by an east-dipping fault, with strike- oriented NS slightly rotated clockwise, better explains the observed macroseismic field of the 1908 Messina Straits earthquake. Besides, the fracture nucleated at the southern end of the fault and ruptured northward, producing considerable directivity effects. This is in agreement with the published results obtained from the investigation of the historical seismograms. We alsodeterminerealisticvalues fortherupturevelocityand therise-time.Ourstudyconfirms the greatpotentialofthemacroseismicdata,demonstratingthattheycontainenoughinformationto constrain important characteristics of the fault, which can be retrieved by using complex source models and computing complete wavefield. Moreover, we also show that the simultaneous comparison of both PGA- and PGV-based synthetic macroseismic fields with the original intensities provides tighter constraints for discriminating among different source models, with respect to what attainable from each of them
    Description: Published
    Description: 164-173
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: JCR Journal
    Description: restricted
    Keywords: Earthquake ground motions; Earthquake source observations. ; 04. Solid Earth::04.06. Seismology::04.06.03. Earthquake source and dynamics
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  • 25
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    Numerical evidences enabling to reconcile gravity and height changes in volcanic areas (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: Gravity and height changes, reflecting magma accumulation in subsurface chambers, are evaluated using Finite Element models in order to resolve controversial relationships observed in some volcanic areas. When significant gravity changes occur without any significant deformation, or vice versa, it is often difficult, if not impossible, to jointly explain the observations using the popular Mogi model. Here we explore whether these discrepancies can be explained by magma compressibility and source geometry effects. Compression of resident magma and expansion of the chamber wall act concurrently to accommodate newly added magma. Gravity-height ratios are found to mainly depend on: (i) geometry of the sources, which control the volume expansion of the chamber, (ii) magma compressibility, which affects the contraction of the magma resident in the chamber, and (iii) depth of the sources. Our numerical results show that, when magma compressibility and non-spherical sources are taken into account, significant gravity variations can, indeed, be successfully reconciled with negligible height changes. This may be the case at Etna volcano, where gravity changes (about 40 miuGal) without any significant deformation (below 5 cm) were observed during the 1994-1995 inflation period. The numerical results point to the accumulation of a 1.4x10^10 kg mass into an elongated source simulating a shallow storage region supplying the summit craters.
    Description: Published
    Description: 164-173
    Description: 4V. Vulcani e ambiente
    Description: JCR Journal
    Description: restricted
    Keywords: numerical modeling, gravity and height changes ; 04. Solid Earth::04.03. Geodesy::04.03.05. Gravity variations
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  • 26
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    On the present-day crustal stress, strain-rate fields and mantle anisotropy pattern of Italy (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: We present an up-to-date high resolution picture of the ongoing crustal deformation field of Italy, based on an extensive combination of permanent and non-permanent GPS observations carried out since 1994. In addition, we present an updated map of contemporary SHmax orientations computed by a multidisciplinary data set of well-constrained stress indicators, including both published results and novel analyses. The comparison of stress and geodetic strain-rates directions reveals that both patterns are near-parallel over a large part of the investigated area, highlighting that crustal stress and surface deformation are driven by the same mechanism. The comparison of the azimuthal patterns of surface strain and mantle deformation shows a modest correlation on the Alps and a low correlation along the Apennines chain and the Calabro-Peloritan Arc. Along the Apennines chain, this feature suggests the occurrence of significant strain partitioning and crust–mantle mechanical decoupling. Along the Calabro-Peloritan Arc, the apparent low correlation reflects a different mantle–crust mechanism of deformation to the ongoing subduction and rollback of the Ionian slab. In addition, the superposition of regional/local effects related to second-order sources (crustal lateral density changes, strength contrasts), which at regional/local scale modulate the crustal stress/strain-rate pattern, cannot be ruled out.
    Description: Published
    Description: 969-985
    Description: 1T. Geodinamica e interno della Terra
    Description: JCR Journal
    Description: restricted
    Keywords: Plate motions ; Seismic anisotropy ; Kinematics of crustal and mantle deformation ; 04. Solid Earth::04.03. Geodesy::04.03.01. Crustal deformations
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 27
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    Dynamic feeder dyke systems in basaltic volcanoes: the exceptional example o fthe 1809 Etna eruption (Italy) (2015)
    Nature Publishing Group
    Details
    Publication Date: 2017-04-04
    Description: In this paper, we describe the 1809 eruption of Mt. Etna, Italy, which represents one historical rare case in which it is possible to observe details of the internal structure of the feeder system. This is possible thanks to the presence of two large pit craters located in the middle of the eruptive fracture field that allow studying a section of the shallow feeder system. Along the walls of one of these craters, we analysed well-exposed cross sections of the uppermost 15–20 m of the feeder system and related volcanic products. Here, we describe the structure, morphology and lithology of this portion of the 1809 feeder system, including the host rock which conditioned the propagation of the dyke, and compare the results with other recent eruptions. Finally, we propose the dynamic model of the magma behaviour inside a laterally-propagating feeder dyke, demonstrating how this dynamic triggered important changes in the eruptive style (from effusive/Strombolian to phreatomagmatic) during the same eruption. Our results are also useful for hazard assessment related to the development of flank eruptions, potentially the most hazardous type of eruption from basaltic volcanoes in densely urbanized areas, such as Mt. Etna.
    Description: Published
    Description: 1-11
    Description: 2T. Tettonica attiva
    Description: 2V. Dinamiche di unrest e scenari pre-eruttivi
    Description: 3V. Dinamiche e scenari eruttivi
    Description: 4V. Vulcani e ambiente
    Description: 6A. Monitoraggio ambientale, sicurezza e territorio
    Description: N/A or not JCR
    Description: open
    Keywords: feeder dyke ; basaltic volcanoes ; flank eruptions ; Etna ; volcanic hazards ; sill ; volcanic rift ; 04. Solid Earth::04.04. Geology::04.04.09. Structural geology ; 04. Solid Earth::04.07. Tectonophysics::04.07.07. Tectonics ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.03. Magmas ; 04. Solid Earth::04.08. Volcanology::04.08.04. Thermodynamics ; 04. Solid Earth::04.08. Volcanology::04.08.05. Volcanic rocks ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk ; 05. General::05.02. Data dissemination::05.02.03. Volcanic eruptions
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  • 28
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    Seismic Q estimates in Umbria-Marche (central Italy): hints for the retrieval of a new attenuation law for seismic risk (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: In the Umbria Marche (Central Italy) region an important earthquake sequence occurred in 1997, characterized by nine earthquakes with magnitudes in the range between 5 and 6, that caused important damages and causalities. In the present paper we separately estimate intrinsic- and scattering- Q −1 parameters, using the classical MLTWA approach in the assumption of a half space model. The results clearly show that the attenuation parameters Qi −1 and Qs −1 are frequency dependent. This estimate is compared with other attenuation studies carried out in the same area, and with all the other MLTWA estimates obtained till now in other tectonic environments in the Earth. The bias introduced by the half space assumption is investigated through numerical solutions of the Energy Transport equation in the more realistic assumption of a heterogeneous crust overlying a transparent mantle, with a Moho located at a depth ranging between 35 and 45 km below the surface. The bias introduced by the half space assumption is significant only at high frequency. We finally show how the attenuation estimates, calculated with different techniques, lead to different PGA decay with distance relationships, using the well known and well proven Boore’s method. This last result indicates that care must be used in selecting the correct estimate of the attenuation parameters for seismic risk purposes. We also discuss the reason why MLTWA may be chosen among all the other available techniques, due to its intrinsic stability, to obtain the right attenuation parameters.
    Description: Published
    Description: 1370-1382
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: JCR Journal
    Description: open
    Keywords: Seismic attenuation ; scattering ; 04. Solid Earth::04.06. Seismology::04.06.09. Waves and wave analysis
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  • 29
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    The seismogenic structure of the 2013–2014 Matese seismic sequence, Southern Italy: implication for the geometry of the Apennines active extensional belt (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: Seismological, geological and geodetic data have been integrated to characterize the seismogenic structure of the late 2013-early 2014 moderate energy (maximum local magnitude MLmax = 4.9) seismic sequence that struck the interior of the Matese Massif, part of the Southern Apennines active extensional belt. The sequence, heralded by a ML = 2.7 foreshock, was characterized by two main shocks with ML = 4.9 and ML = 4.2, respectively, which occurred at a depth of ∼17–18 km. The sequence was confined in the 10–20 km depth range, significantly deeper than the 1997–1998 sequence which occurred few km away on the northeastern side of the massif above ∼15 km depth. The depth distribution of the 2013–14 sequence is almost continuous, albeit a deeper (16–19 km) and a shallower (11–15 km) group of events can be distinguished, the former including the main shocks and the foreshock. The epicentral distribution formed a ∼10 km long NNW–SSE trending alignment, which almost parallels the surface trace of late Pliocene–Quaternary southwest-dipping normal faults with a poor evidence of current geological and geodetic deformation. We built an upper crustal model profile for the eastern Matese massif through integration of geological data, oil exploration well logs and seismic tomographic images. Projection of hypocentres on the profile suggests that the seismogenic volume falls mostly within the crystalline crust and subordinately within the Mesozoic sedimentary cover of Apulia, the underthrust foreland of the Southern Apennines fold and thrust belt. Geological data and the regional macroseismic field of the sequence suggest that the southwest-dipping nodal plane of the main shocks represents the rupture surface that we refer to here as the Matese fault. The major lithological discontinuity between crystalline and sedimentary rocks of Apulia likely confined upward the rupture extent of the Matese fault. Repeated coseismic failure represented by the deeper group of events in the sequence, activated in a passive fashion the overlying ∼11–15 km deep section of the upper crustal normal faults. We consider the southwest-dipping Matese fault representative of a poorly known type of seismogenic structures in the Southern Apennines, where extensional seismogenesis and geodetic strain accumulation occur more frequently on NE-dipping, shallower-rooted faults. This is the case of the Boiano Basin fault located on the northern side of the massif, to which the 1997–1998 sequence is related. The close proximity of the two types of seismogenic faults at the Matese Massif is related to the complex crustal architecture generated by the Pliocene–early Pleistocene contractional and transpressional tectonics.
    Description: Published
    Description: 823-837
    Description: 2T. Tettonica attiva
    Description: JCR Journal
    Description: partially_open
    Keywords: Seismicity and tectonics ; Continental tectonics: extensional ; Crustal structure ; 04. Solid Earth::04.04. Geology::04.04.01. Earthquake geology and paleoseismology ; 04. Solid Earth::04.04. Geology::04.04.09. Structural geology ; 04. Solid Earth::04.06. Seismology::04.06.06. Surveys, measurements, and monitoring
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  • 30
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    Empirical conversion between teleseismic magnitudes (mb and Ms) and moment magnitude (Mw) at the Global, Euro-Mediterranean and Italian scale (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: We analysed the conversion problem between teleseismic magnitudes (Ms and mb) provided by the Seismological Bulletin of the International Seismological Centre and moment magni- tudes (Mw) provided by online moment tensor (MT) catalogues using the chi-square general orthogonal regression method (CSQ) that, differently from the ordinary least-square regres- sion method (OLS), accounts for the measurement errors of both the predictor and response variables. To account for the non-linearity of the relationships, we used two types of curvilin- ear models: (i) the exponential model (EXP), recently proposed by the authors of the Global Catalogue sponsored by the Global Earthquake Model (GEM) Foundation and (ii) a connected bilinear (CBL) model, similar to that proposed by Ekstro ̈m & Dziewonski, where two different linear trends at low and high magnitudes are connected by an arc of circle that preserves the continuity of the function and of its first derivative at the connecting points. For Ms, we found that the regression curves computed for a global data set (GBL) are likely to be biased by the incompleteness of global MT catalogues for Mw 〈5.0–5.5. In fact, the GBL curves deviate significantly from a similar regression curve computed for a Euro-Mediterranean data set (MED) integrated with the data provided by two regional MT catalogues including many more events with Mw 〈 5.0–5.5. The GLB regression curves overestimate the Mw proxies computed from Ms up to 0.5 magnitude units. Hence for computing Mw proxies at the global scale of Ms ≤ 5.5, we suggest to adopt the coefficients obtained from the MED regression. The analysis of the frequency–magnitude relationship of the resulting Mw proxy catalogues confirms the validity of this choice as the behaviour of b-value as a function of cut-off magnitude of the GBL data set is much more stable using such approach. The incompleteness of Mw’s provided from MT global catalogues also affects the mb GBL data set but in this case the use of the CSQ regression method, in place of the OLS, mitigates the bias and then, at low magnitudes, the EXP regression curve computed from the more complete MED data set almost coincides with that computed from the GBL data set. Our results also indicate that the slope at low magnitudes of the Mw–Ms relationship is substantially consistent with the hypothesized theoretical value of 2/3 for Ms 〈 5.0 while the slope of the Mw–mb relationship at high magnitudes probably reaches the theoretically expected value of 2 only in the proximity of the upper limit of mb determinations in our data set (mb = 7.2).
    Description: Published
    Description: 805–828
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: Earthquake source observations ; Statistical seismology ; 05. General::05.02. Data dissemination::05.02.02. Seismological data
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    Comment on ‘Are the source models of the M 7.1 1908 Messina Straits earthquake reliable? Insights from a novel inversion and sensitivity analysis of levelling data’ by M. Aloisi, V. Bruno, F. Cannav ` o, L. Ferranti, M. Mattia, C. Monaco and M. Palano (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: In a recent paper, important issues were raised about the identification of the fault responsible for the 1908 Messina Straits earthquake. Starting with a reanalysis of the available original geodetic data, the authors aimed to demonstrate that both of the fault–plane orientations derived by the focal mechanism are compatible with the measurements. On these grounds, and based on geological considerations, they argued in favour of the Armo fault—a high-angled structure on the Calabrian side of the Messina Straits—as responsible for the 1908 earthquake. We indicate here that their analysis has some pitfalls that produce questionable results, and that render their conclusions unreliable. Moreover, especially when dealing with such old events and data, we consider that it is more prudent not to derive conclusions on the basis of a single data set, as all of the available information should be included in any interpretation. Indeed, when the joint results of the seismological and geodetic analyses are taken into account, a consistent and robust source model can be derived that indicates that a low-angle, east-dipping fault is the most likely source of this 1908 Messina Straits earthquake
    Description: Published
    Description: 1399-1402
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: JCR Journal
    Description: restricted
    Keywords: Earthquake source observations; Seismicity and tectonics; Europe ; 04. Solid Earth::04.06. Seismology::04.06.03. Earthquake source and dynamics
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  • 32
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    Deformation of the western Indian plate boundary: insights from differential and multi-aperture InSAR data inversion of the 2008, Baluchistan (Western Pakistan) seismic sequence (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: In this study,we use Differential Synthetic Aperture Radar Interferometry (DInSAR) and multiaperture interferometry (MAI) to constrain the sources of the three largest events of the 2008 Baluchistan (western Pakistan) seismic sequence, namely two Mw 6.4 events only 12 hr apart and an Mw 5.7 event that occurred 40 d later. The sequence took place in the Quetta Syntaxis, the most seismically active region of Baluchistan, tectonically located between the colliding Indian Plate and the Afghan Block of the Eurasian Plate. Surface displacements estimated from ascending and descending ENVISAT ASAR acquisitions were used to derive elastic dislocation models for the sources of the two main events. The estimated slip distributions have peak values of 120 and 130 cm on a pair of almost parallel and near-vertical faults striking NW–SE, and of 50 cm and 60 cm on two high-angle faults striking NE–SW. Values up to 50 cm were found for the largest aftershock on an NE–SW fault located between the sources of the main shocks. The MAI measurements, with their high sensitivity to the north–south motion component, are crucial in this area to accurately describe the coseismic displacement field. Our results provide insight into the deformation style of the Quetta Syntaxis, suggesting that right-lateral slip released at shallow depths on large NW fault planes is compatible with left-lateral activation on smaller NE–SW faults.
    Description: Published
    Description: 25-39
    Description: 2T. Tettonica attiva
    Description: JCR Journal
    Description: restricted
    Keywords: Radar interferometry ; Satellite geodesy ; Seismicity and Tectonics ; Continental margins: convergent ; Earthquake interaction, forecasting and prediction ; Earthquake source observation ; 04. Solid Earth::04.07. Tectonophysics::04.07.07. Tectonics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Monitoring of crustal seismic velocity variations in the L'Aquila fault zone inferred from noise cross-correlation (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: The relative seismic velocity variations possibly associated to large earthquakes can be readily monitored via cross-correlation of seismic noise. In a recently published study, more than 2 yr of continuous seismic records have been analysed from three stations surrounding the epicentre of the 2009 April 6, Mw 6.1 L’Aquila earthquake, observing a clear decrease of seismic velocities likely corresponding to the co-seismic shaking. Here, we extend the analysis in space, including seismic stations within a radius of 60 km from the main shock epicentre, and in time, collecting 5 yr of data for the six stations within 40 km of it. Our aim is to investigate how far the crustal damage is visible through this technique, and to detect a potential post-seismic recovery of velocity variations. We find that the co-seismic drop in velocity variations extends up to 40 km from the epicentre, with spatial distribution (maximum around the fault and in the north– east direction from it) in agreement with the horizontal co-seismic displacement detected by global positioning system (GPS). In the first few months after L’Aquila earthquake, the crust’s perturbation in terms of velocity variations displays a very unstable behaviour, followed by a slow linear recovery towards pre-earthquake conditions; by almost 4 yr after the event, the co-seismic drop of seismic velocity is not yet fully recovered. The strong oscillations of the velocity changes in the first months after the earthquake prevent to detect the fast exponential recovery seen by GPS data. A test of differently parametrized fitting curves demonstrate that the post-seismic recovery is best explained by a sum of a logarithmic and a linear term, suggesting that processes like viscoelastic relaxation, frictional afterlip and poroelastic rebound may be acting concurrently.
    Description: Published
    Description: 604-6011
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: JCR Journal
    Description: restricted
    Keywords: Time-series analysis; Interferometry; Computational seismology; Europe ; 04. Solid Earth::04.06. Seismology::04.06.03. Earthquake source and dynamics
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    Shear-wave velocity profile and seismic input derived from ambient vibration array measurements: the case study of downtown L'Aquila (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2019-12-13
    Description: Downtown L'Aquila suffered severe damage (VIII-IX EMS98 intensity) during the 2009 April 6 Mw 6.3 earthquake. The city is settled on a top flat hill, with a shear-wave velocity profile characterized by a reversal of velocity at a depth of the order of 50–100 m, corresponding to the contact between calcareous breccia and lacustrine deposits. In the southern sector of downtown, a thin unit of superficial red soils causes a further shallow impedance contrast that may have influenced the damage distribution during the 2009 earthquake. In this paper, the main features of ambient seismic vibrations have been studied in the entire city centre by using array measurements. We deployed six 2-D arrays of seismic stations and 1-D array of vertical geophones. The 2-D arrays recorded ambient noise, whereas the 1-D array recorded signals produced by active sources. Surface-wave dispersion curves have been measured by array methods and have been inverted through a neighbourhood algorithm, jointly with the H/V ambient noise spectral ratios related to Rayleigh waves ellipticity. We obtained shear-wave velocity (Vs) profiles representative of the southern and northern sectors of downtown L'Aquila. The theoretical 1-D transfer functions for the estimated Vs profiles have been compared to the available empirical transfer functions computed from aftershock data analysis, revealing a general good agreement. Then, the Vs profiles have been used as input for a deconvolution analysis aimed at deriving the ground motion at bedrock level. The deconvolution has been performed by means of EERA and STRATA codes, two tools commonly employed in the geotechnical engineering community to perform equivalent-linear site response studies. The waveform at the bedrock level has been obtained deconvolving the 2009 main shock recorded at a strong motion station installed in downtown. Finally, this deconvolved waveform has been used as seismic input for evaluating synthetic time-histories in a strong-motion target site located in the middle Aterno river valley. As a target site, we selected the strong-motion station of AQV 5 km away from downtown L'Aquila. For this site, the record of the 2009 L'Aquila main shock is available and its surface stratigraphy is adequately known making possible to propagate the deconvolved bedrock motion back to the surface, and to compare recorded and synthetic waveforms.
    Description: Published
    Description: 848–866
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: Fourier analysis, Earthquake ground motions , Site effects ; 04. Solid Earth::04.06. Seismology::04.06.04. Ground motion
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    Tomography of core–mantle boundary and lowermost mantle coupled by geodynamics (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2020-05-27
    Description: We propose an innovative approach to mapping CMB topography from seismic P-wave trav- eltime inversions: instead of treating mantle velocity and CMB topography as independent parameters, as has been done so far, we account for their coupling by mantle flow, as formulated by Forte & Peltier. This approach rests on the assumption that P data are sufficiently sensitive to thermal heterogeneity, and that compositional heterogeneity, albeit important in localized regions of the mantle (e.g. within the D′′ region), is not sufficiently strong to govern the pattern of mantle-wide convection and hence the CMB topography. The resulting tomographic maps of CMB topography are physically sound, and they resolve the known discrepancy between images obtained from classic tomography on the basis of core-reflected and core-refracted seismic phases. Since the coefficients of mantle velocity structure are the only free parameters of the inversion, this joint tomography–geodynamics approach reduces the number of param- eters; nevertheless the corresponding mantle models fit the seismic data as well as the purely seismic ones.
    Description: Published
    Description: 730-746
    Description: 1T. Geodinamica e interno della Terra
    Description: JCR Journal
    Description: restricted
    Keywords: Seismic tomography ; 04. Solid Earth::04.01. Earth Interior::04.01.03. Mantle and Core dynamics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Palaeomagnetic analysis on pottery as indicator of the pyroclastic flow deposits temperature: new data and statistical interpretation from the Minoan eruption of Santorini, Greece (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: We present the results of palaeomagnetic analysis on Late Bronge Age pottery from Santorini carried out in order to estimate the thermal effect of the Minoan eruption on the pre-Minoan habitation level. A total of 170 specimens from 108 ceramic fragments have been studied. The ceramics were collected from the surface of the pre-Minoan palaeosol at six different sites, including also samples from the Akrotiri archaeological site. The deposition temperatures of the first pyroclastic products have been estimated by the maximum overlap of the re-heating temperature intervals given by the individual fragments at site level. A new statistical elaboration of the temperature data has also been proposed, calculating at 95 per cent of probability the re-heating temperatures at each site. The obtained results show that the precursor tephra layer and the first pumice fall of the eruption were hot enough to re-heat the underlying ceramics at temperatures 160–230 ◦C in the non-inhabited sites while the temperatures recorded inside the Akrotiri village are slightly lower, varying from 130 to 200 ◦C. The decrease of the temperatures registered in the human settlements suggests that there was some interaction between the buildings and the pumice fallout deposits while probably the buildings debris layer caused by the preceding and syn-eruption earthquakes has also contributed to the decrease of the recorded re-heating temperatures.
    Description: Published
    Description: 33-47
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
    Description: restricted
    Keywords: Archaeomagnetism ; Rock and mineral magnetism ; Volcaniclastic deposits ; 04. Solid Earth::04.05. Geomagnetism::04.05.06. Paleomagnetism ; 04. Solid Earth::04.05. Geomagnetism::04.05.07. Rock magnetism ; 04. Solid Earth::04.08. Volcanology::04.08.08. Volcanic risk ; 05. General::05.02. Data dissemination::05.02.03. Volcanic eruptions
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    Probabilistic hazard for seismically induced tsunamis: accuracy and feasibility of inundation maps (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: Probabilistic tsunami hazard analysis (PTHA) relies on computationally demanding numerical simulations of tsunami generation, propagation, and non-linear inundation on high-resolution topo-bathymetric models. Here we focus on tsunamis generated by co-seismic sea floor dis- placement, that is, on Seismic PTHA (SPTHA). A very large number of tsunami simulations are typically needed to incorporate in SPTHA the full expected variability of seismic sources (the aleatory uncertainty). We propose an approach for reducing their number. To this end, we (i) introduce a simplified event tree to achieve an effective and consistent exploration of the seismic source parameter space; (ii) use the computationally inexpensive linear approximation for tsunami propagation to construct a preliminary SPTHA that calculates the probability of maximum offshore tsunami wave height (H Max) at a given target site; (iii) apply a two-stage filtering procedure to these ‘linear’ SPTHA results, for selecting a reduced set of sources and (iv) calculate ‘non-linear’ probabilistic inundation maps at the target site, using only the selected sources. We find that the selection of the important sources needed for approximating probabilistic inundation maps can be obtained based on the offshore HMax values only. The filtering procedure is semi-automatic and can be easily repeated for any target sites. We describe and test the performances of our approach with a case study in the Mediterranean that considers potential subduction earthquakes on a section of the Hellenic Arc, three target sites on the coast of eastern Sicily and one site on the coast of southern Crete. The comparison between the filtered SPTHA results and those obtained for the full set of sources indicates that our approach allows for a 75–80 per cent reduction of the number of the numerical simulations needed, while preserving the accuracy of probabilistic inundation maps to a reasonable degree.
    Description: Published
    Description: 574-588
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: Tsunami ; Hazard ; Probabilistic ; Subduction ; Mediterranean ; SPTHA ; 04. Solid Earth::04.06. Seismology::04.06.02. Earthquake interactions and probability ; 04. Solid Earth::04.07. Tectonophysics::04.07.04. Plate boundaries, motion, and tectonics ; 04. Solid Earth::04.07. Tectonophysics::04.07.06. Subduction related processes
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  • 38
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    Assessment of resolution and accuracy of the Moving Window Cross Spectral technique for monitoring crustal temporal variations using ambient seismic noise (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: Temporal variations in the elastic behaviour of the Earth’s crust can be monitored through the analysis of the Earth’s seismic response and its evolution with time. This kind of analysis is particularly interesting when combined with the reconstruction of seismic Green’s functions from the cross-correlation of ambient seismic noise, which circumvents the limitations imposed by a dependence on the occurrence of seismic events. In fact, because seismic noise is recorded continuously and does not depend on earthquake sources, these cross-correlation functions can be considered analogously to records from continuously repeating doublet sources placed at each station, and can be used to extract observations of variations in seismic velocities. These variations, however, are typically very small: of the order of 0.1 per cent. Such accuracy can be only achieved through the analysis of the full reconstructed waveforms, including later scattered arrivals. We focus on the method known as Moving-Window Cross-Spectral Analysis that has the advantage of operating in the frequency domain, where the bandwidth of coherent signal in the correlation function can be clearly defined. We investigate the sensitivity of this method by applying it to microseismic noise cross-correlations which have been perturbed by small synthetic velocity variations and which have been randomly contaminated. We propose threshold signal-to-noise ratios above which these perturbations can be reliably observed. Such values are a proxy for cross-correlation convergence, and so can be used as a guideline when determining the length of microseismic noise records that are required before they can be used for monitoring with the moving-window cross-spectral technique.
    Description: Published
    Description: 867-882
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: JCR Journal
    Description: restricted
    Keywords: Interferometry; Volcano monitoring ; 04. Solid Earth::04.02. Exploration geophysics::04.02.06. Seismic methods
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  • 39
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    Up-dip directivity in near-source during the 2009 L'Aquila main shock (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: In this study we have investigated the forward directivity associated with the initial up-dip rupture propagation during the April 6th 2009 (MW 6.1) L’Aquila normal-faulting earthquake. The objective is the understanding of how the peculiar initial behavior of rupture history during the main shock has affected the near-source recorded ground motions in the L’Aquila town and surrounding areas. We have modeled the observed ground velocities at the closest near-source recording sites by computing synthetic seismograms using a discrete wavenumbers and finite difference approach in the low frequency bandwidth (0.02-0.4 Hz) to avoid site effects contaminations. We use both the rupture model retrieved by inverting ground motion waveforms and continuous high sampling-rate GPS time series as well as uniform-slip constant-rupture speed models. Our results demonstrate that the initial up-dip rupture propagation, characterizing the first three seconds of the rupture history during the L’Aquila main shock and releasing only ∼25% of total seismic moment, controls the observed ground motions in the near-source. This initial stage of the rupture is characterized by the generation of clear ground velocity pulses, which we interpret as a forward directivity effect. Our modeling results confirm a heterogeneous distribution of rupture velocity during the initial up-dip rupture propagation, since uniform rupture speed models overestimate up-dip directivity effects in the footwall of the causative fault. The up-dip directivity observed in the near field during the 2009 L’Aquila main shock is that predicted for a normal faulting earthquake by Somerville’s directivity model, but it differs from that inferred from far-field observations that conversely provide evidence of along-strike directivity. This calls for a careful analysis as well as for the realistic inclusion of rupture directivity to predict ground motions in the near source.
    Description: Published
    Description: 1618-1631
    Description: 4T. Fisica dei terremoti e scenari cosismici
    Description: JCR Journal
    Description: restricted
    Keywords: earthquake ground motion, earthquake source observations, computational seismology ; 04. Solid Earth::04.06. Seismology::04.06.99. General or miscellaneous
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  • 40
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    Comment on ‘Magnitude conversion problem using general orthogonal regression’ by H. R. Wason, Ranjit Das and M. L. Sharma, (Geophys. J. Int., 190, 1091–1096) (2015)
    Wiley-Blackwell
    In:  Magnitude conversion problem using general orthogonal regression’ by H. R. Wason, Ranjit Das and M. L. Sharma, (Geophys. J. Int., 190, 1091–1096)
    Details
    Publication Date: 2017-04-04
    Description: The argument proposed by Wason et al. that the conversion of magnitudes from a scale (e.g. Ms or mb) to another (e.g. Mw), using the coefficients computed by the general orthogonal regression method (Fuller) is biased if the observed values of the predictor (independent) variable are used in the equation as well as the methodology they suggest to estimate the supposedly true values of the predictor variable are wrong for a number of theoretical and empirical reasons. Hence, we advise against the use of such methodology for magnitude conversions.
    Description: Published
    Description: 626-627
    Description: 3T. Pericolosità sismica e contributo alla definizione del rischio
    Description: JCR Journal
    Description: restricted
    Keywords: Earthquake source observations ; Statistical seismology ; Computational seismology ; 05. General::05.01. Computational geophysics::05.01.04. Statistical analysis
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  • 41
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    Fluid pressure waves trigger earthquakes (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: Fluids—essentially meteoric water—are present everywhere in the Earth’s crust, occasionally also with pressures higher than hydrostatic due to the tectonic strain imposed on impermeable undrained layers, to the impoundment of artificial lakes or to the forced injections required by oil and gas exploration and production. Experimental evidence suggests that such fluids flow along preferred paths of high diffusivity, provided by rock joints and faults. Studying the coupled poroelastic problem, we find that such flow is ruled by a nonlinear partial differential equation amenable to a Barenblatt-type solution, implying that it takes place in formof solitary pressure waves propagating at a velocity which decreases with time as v ∝t [1/(n − 1) − 1] with n 7. According to Tresca-Von Mises criterion, these waves appear to play a major role in earthquake triggering, being also capable to account for aftershock delay without any further assumption. The measure of stress and fluid pressure inside active faults may therefore provide direct information about fault potential instability.
    Description: Published
    Description: 1281–1285
    Description: 6T. Sismicità indotta e caratterizzazione sismica dei sistemi naturali
    Description: N/A or not JCR
    Description: restricted
    Keywords: forecasting and prediction ; 04. Solid Earth::04.06. Seismology::04.06.03. Earthquake source and dynamics
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    Projected Changes in Discharge in an Agricultural Watershed in Iowa (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: Our improved capability to adapt to future changes in discharge is linked to our capability to predict the magnitude or at least the direction of these changes. For the agricultural U.S. Midwest, too much or too little water has severe socio-economic impacts. Here we focus on the Raccoon River at Van Meter, Iowa, and use a statistical approach to examine projected changes in discharge. We build on statistical models using rainfall and harvested corn and soybean acreage to explain the observed discharge variability. We then use projections of these two predictors to examine the projected discharge response. Results are based on seven global climate models part of the Coupled Model Intercomparison Project Phase 5 and two representative concentration pathways (RCPs 4.5 and 8.5). There is not a strong signal of change in the discharge projections under the RCP 4.5. However the results for the RCP 8.5 point to a stronger changing signal related to larger projected increases in rainfall, resulting in increasing trends in particular in the upper part of the discharge distribution (i.e., 60th percentile and above). Examination of two hypothetical agricultural scenarios indicates that these increasing trends could be alleviated by decreasing the extent of the agricultural production. We also discuss how the methodology presented in this study represents a viable approach to move forward with the concept of return period for engineering design and management in a non-stationary world.
    Description: Published
    Description: 1361–1371
    Description: 4A. Clima e Oceani
    Description: JCR Journal
    Description: restricted
    Keywords: river discharge ; rainfall ; statistical model ; 01. Atmosphere::01.01. Atmosphere::01.01.02. Climate
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    Seismic footprints of shallow dyke propagation at Etna, Italy (2016)
    Nature Publishing Group
    Details
    Publication Date: 2017-04-04
    Description: One of the key issues in forecasting volcanic eruptions is to detect signals that can track the propagation of dykes towards the surface. Continuous monitoring of active volcanoes helps significantly in achieving this goal. The seismic data presented here are unique, as they document surface faulting processes close (tens to a few hundred meters) to their source, namely the dyke tip. They originated nearby - and under - a seismic station that was subsequently destroyed by lava flows during eruptive activity at Etna volcano, Italy, in 2013. On February 20, a ~600 m-long and ~120 m wide NW-SE fracture field opened at an altitude between 2750 and 2900 m. The consequent rock dislocation caused the station to tilt and offset the seismic signal temporarily. Data acquisition continued until the arrival of the lava flow that led to the breakdown of the transmission system. Shallow ground fracturing and repeated low-frequency oscillations occurred during two stages in which the seismic signal underwent a maximum offset ~2.57 E+04 nm/s. Bridging instrumental recordings, fieldwork and conceptual modelling, these data are interpreted as the seismic footprints of a magmatic dyke intrusion that moved at speed ~0.02 m/s (first stage) and 0.46 m/s (second stage).
    Description: This work was supported by the MED-SUV project, which has received funding from the European Union’s Seventh Programme for research, technological development and demonstration under grant agreement No 308665.
    Description: Published
    Description: 11908
    Description: 2V. Dinamiche di unrest e scenari pre-eruttivi
    Description: JCR Journal
    Description: restricted
    Keywords: dyke propagation ; Etna ; seismic signals ; ground fracturing ; conceptual modelling ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology
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    A strategy to explore the topography-driven distortions in the tilt field induced by a spherical pressure source. The case of Mt. Etna. (2016)
    Wiley-Blackwell
    Details
    Publication Date: 2017-04-04
    Description: We present a strategy to thoroughly investigate the effects of prominent topography on the surface tilt due to a spherical pressure source. We use Etna's topography as a case of study and, for different source positions, we compare the tilt fields calculated through (i) a 3-D boundary element method and (ii) analytical half-space solutions. We systematically determine (i) the source positions leading to the strongest tilt misfits when numerical and analytical results are compared and (ii) the surface areas where the strongest distortions in the tilt field are most likely to be observed. We also demonstrate that, under critical circumstances, in terms of respective positions of pressure source and observation points, results of inversion procedures aimed at retrieving the source parameters can be misleading, if tilt data are analysed using models that do not account for topography.
    Description: Published
    Description: 1471–1481
    Description: 2V. Dinamiche di unrest e scenari pre-eruttivi
    Description: JCR Journal
    Description: restricted
    Keywords: Numerical approximations and analysis ; Transient deformation ; Volcano monitoring ; 04. Solid Earth::04.03. Geodesy::04.03.01. Crustal deformations
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  • 45
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    A novel approach to estimate the eruptive potential and probability in open conduit volcanoes (2016)
    Nature Publishing Group
    Details
    Publication Date: 2017-04-04
    Description: In open conduit volcanoes, volatile-rich magma continuously enters into the feeding system nevertheless the eruptive activity occurs intermittently. From a practical perspective, the continuous steady input of magma in the feeding system is not able to produce eruptive events alone, but rather surplus of magma inputs are required to trigger the eruptive activity. The greater the amount of surplus of magma within the feeding system, the higher is the eruptive probability.Despite this observation, eruptive potential evaluations are commonly based on the regular magma supply, and in eruptive probability evaluations, generally any magma input has the same weight. Conversely, herein we present a novel approach based on the quantification of surplus of magma progressively intruded in the feeding system. To quantify the surplus of magma, we suggest to process temporal series of measurable parameters linked to the magma supply. We successfully performed a practical application on Mt Etna using the soil CO2 flux recorded over ten years.
    Description: Published
    Description: 30471
    Description: 2V. Dinamiche di unrest e scenari pre-eruttivi
    Description: 5V. Sorveglianza vulcanica ed emergenze
    Description: JCR Journal
    Description: restricted
    Keywords: eruptive potential ; eruptive probability ; open conduit volcanoes ; Etna ; Soil CO2 flux ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.01. Gases ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring ; 05. General::05.08. Risk::05.08.01. Environmental risk
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    New insights on the provenance of obsidian fragments of Ustica Island (Palermo, Sicily). (2017)
    Wiley-Blackwell
    Details
    Publication Date: 2017-12-11
    Description: In this study we applied a multidisciplinary approach, coupling geophysical and geochemical measurements, to unveil the provenance of 170 obsidian flakes, collected on the volcanic island of Ustica (Sicily). On this island there are some prehistoric settlements dated from the Neolithic to the Middle Bronze Age. Despite not having geological outcrops of obsidian rocks, the countryside of Ustica is rich in fragments of this volcanic glass, imported from other source areas. The study of obsidian findings was carried out first through visual observations and density measurements. At least two different obsidian families have been distinguished, probably imported from Lipari and Pantelleria islands. Analysing the magnetic properties of the samples, these two main sources were confirmed, but the possibility of other provenances was inferred. Finally, we characterized the geochemical signature of the Ustica obsidians by performing microchemical analyses through electron microprobe (EMPA) and laser ablation (LA–ICP–MS). The results were compared with literature data, confirming the presence of the Lipari and Pantelleria sources (Sicily) and indicating for the first time in this part of Italy a third provenance from Palmarola island (Latium). Our results shed new light on the commercial exchanges in the peri-Tyrrhenian area during the prehistoric age.
    Description: Published
    Description: 435–454
    Description: 1SR. TERREMOTI - Servizi e ricerca per la Società
    Description: 2SR. VULCANI - Servizi e ricerca per la Società
    Description: 3SR. AMBIENTE - Servizi e ricerca per la Società
    Description: JCR Journal
    Description: restricted
    Keywords: obsdian provenance ; LA-ICPMS ; 05. General::05.04. Instrumentation and techniques of general interest::05.04.99. General or miscellaneous
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    Local pattern of stress field and seismogenic sources in the Pergola-Melandro basin and the Agri valley (Southern Italy) (2018)
    Wiley-Blackwell
    Details
    Publication Date: 2018-03-20
    Description: Our study area is a ~50 km long section of the central-southern Apennines tectonic belt that includes the Pergola-Melandro basin and the Agri valley. This region is located between the areas interested by the 1980 Ms=6.9 Irpinia and the 1857 M=7.0 Val d’Agri earthquakes and is characterized by rare historical events and very low and sparse background seismicity. In this study we provide new seismological and geophysical information to identify the characteristics of the seismotectonics in the area, as the prevailing faulting mechanism and the fit of local to regional stress field. These data concern focal mechanisms from waveform modeling and P-wave polarities, analyses of borehole breakouts and detailed investigation of two seismic sequences. All the data cover a significantly broad range of magnitudes and depths and suggest that no important local variation in stress orientation seems to affect this area, which shows a NE-SW direction of extension consistent with that regionally observed in Southern Italy. Such local homogeneity in the stress field pattern is peculiar of the study area; the variations of orientation and/or type of stress observed in the northern Apennines or only less than 100 km toward the northwest within the same tectonic belt are absent here. Furthermore, there is a suggestion for a northeastward sense of dip of the seismogenic faults in the region, an interesting constraint to the characterization of seismic sources
    Description: Published
    Description: 575-583
    Description: 2T. Sorgente Sismica
    Description: JCR Journal
    Keywords: faulting ; seismicity ; 04. Solid Earth::04.07. Tectonophysics::04.07.05. Stress
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Low-temperature catalytic CO2 hydrogenation with geological quantities of ruthenium: a possible abiotic CH4 source in chromitite-rich serpentinized rocks. (2015)
    Wiley-Blackwell
    Details
    Publication Date: 2020-02-24
    Description: Metal-catalysed CO2 hydrogenation is considered a source of methane in serpentinized (hydrated) igneous rocks and a fundamental abiotic process germane to the origin of life. Iron, nickel, chromium and cobalt are the catalysts typically employed in hydrothermal simulation experiments to obtain methane at temperatures 〉200°C. However, land-based present-day serpentinization and abiotic gas apparently develop below 100°C, down to approximately 40–50°C. Here, we document considerable methane production in thirteen CO2 hydrogenation experiments performed in a closed dry system, from 20 to 90°C and atmospheric pressure, over 0.9–122 days, using concentrations of non-pretreated ruthenium equivalent to those occurring in chromitites in ophiolites or igneous complexes (from 0.4 to 76 mg of Ru, equivalent to the amount occurring approximately in 0.4–760 kg of chromitite). Methane production increased with time and temperature, reaching approximately 87 mg CH4 per gram of Ru after 30 days (2.9 mgCH4/gru/day) at 90°C. At room temperature, CH4 production rate was approximately three orders of magnitude lower (0.003 mgCH4/gru/day). We report the first stable carbon and hydrogen isotope ratios of abiotic CH4 generated below 100°C. Using initial d13CCO2 of -40&, we obtained room temperature d13CCH4 values as 13C depleted as 142&. With time and temperature, the C-isotope separation between CO2 and CH4 decreased significantly and the final d13CCH4 values approached that of initial d13CCO2. The presence of minor amounts of C2-C6 hydrocarbons is consistent with observations in natural settings. Comparative experiments at the same temperatures with iron and nichel catalysts did not generate CH4. Ru-enriched chromitites could potentially generate methane at low temperatures on Earth and on other planets.
    Description: Published
    Description: 438–452
    Description: 7A. Geofisica di esplorazione
    Description: JCR Journal
    Description: restricted
    Keywords: abiotic methane, Sabatier reaction ; 04. Solid Earth::04.04. Geology::04.04.12. Fluid Geochemistry
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Considering uncertainties in the determination of earthquake source parameters from seismic spectra. (2016)
    Wiley-Blackwell
    Details
    Publication Date: 2020-02-05
    Description: In this paper, we present a method for handling uncertainties in the determination of the source parameters of earthquakes from spectral data. We propose a robust framework for estimating earthquake source parameters and relative uncertainties, which are propagated down to the estimation of basic seismic parameters of interest such as the seismic moment, the moment magnitude, the source size and the static stress drop. In practice, we put together a Bayesian approach for model parameter estimation and a weighted statistical mixing of multiple solutions obtained from a network of instruments, providing a useful framework for extracting meaningful data from intrinsically uncertain data sets. The Bayesian approach used to estimate the source spectra parameters is a simple but powerful mechanism for non-linear model fitting, providing also the opportunity to naturally propagate uncertainties and to assess the quality and uniqueness of the solution. Another important added value of such an approach is the possibility of integrating information from the expertise of seismologists. Such data can be encoded in a prior state of information that is then updated with the information provided by seismological data. The performance of the proposed approach is demonstrated analysing data from the 1909 April 23 earthquake occurred near Benavente (Portugal).
    Description: Published
    Description: 691-701
    Description: 2T. Tettonica attiva
    Description: JCR Journal
    Description: open
    Keywords: Fourier analysis ; Probability distributions ; Earthquake source observations ; Seismicity and tectonics ; 04. Solid Earth::04.02. Exploration geophysics::04.02.06. Seismic methods
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Recent Arctic tundra fire initiates widespread thermokarst development (2015)
    Nature Publishing Group
    In:  EPIC3Scientific Reports, Nature Publishing Group, 5, pp. 15865, ISSN: 2045-2322
    Details
    Publication Date: 2015-10-31
    Description: Fire-induced permafrost degradation is well documented in boreal forests, but the role of fires in initiating thermokarst development in Arctic tundra is less well understood. Here we show that Arctic tundra fires may induce widespread thaw subsidence of permafrost terrain in the first seven years following the disturbance. Quantitative analysis of airborne LiDAR data acquired two and seven years post-fire, detected permafrost thaw subsidence across 34% of the burned tundra area studied, compared to less than 1% in similar undisturbed, ice-rich tundra terrain units. The variability in thermokarst development appears to be influenced by the interaction of tundra fire burn severity and near-surface, ground-ice content. Subsidence was greatest in severely burned, ice-rich upland terrain (yedoma), accounting for ~50% of the detected subsidence, despite representing only 30% of the fire disturbed study area. Microtopography increased by 340% in this terrain unit as a result of ice wedge degradation. Increases in the frequency, magnitude, and severity of tundra fires will contribute to future thermokarst development and associated landscape change in Arctic tundra regions.
    Repository Name: EPIC Alfred Wegener Institut
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    Resolving the controls of water vapour isotopes in the Atlantic sector (2019)
    Nature Publishing Group
    In:  EPIC3Nature Communications, Nature Publishing Group, 10, ISSN: 2041-1723
    Details
    Publication Date: 2020-01-21
    Description: Stable water isotopes are employed as hydrological tracers to quantify the diverse implications of atmospheric moisture for climate. They are widely used as proxies for studying past climate changes, e.g., in isotope records from ice cores and speleothems. Here, we present a new isotopic dataset of both near-surface vapour and ocean surface water from the North Pole to Antarctica, continuously measured from a research vessel throughout the Atlantic and Arctic Oceans during a period of two years. Our observations contribute to a better understanding and modelling of water isotopic composition. The observations reveal that the vapour deuterium excess within the atmospheric boundary layer is not modulated by wind speed, contrary to the commonly used theory, but controlled by relative humidity and sea surface temperature only. In sea ice covered regions, the sublimation of deposited snow on sea ice is a key process controlling the local water vapour isotopic composition.
    Repository Name: EPIC Alfred Wegener Institut
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    A global multiproxy database for temperature reconstructions of the Common Era (2017)
    Nature Publishing Group
    In:  EPIC3Scientific Data, Nature Publishing Group, 4(170088), pp. 1-33, ISSN: 2052-4463
    Details
    Publication Date: 2017-07-21
    Description: Reproducible climate reconstructions of the Common Era (1 CE to present) are key to placing industrial-era warming into the context of natural climatic variability. Here we present a community-sourced database of temperature-sensitive proxy records from the PAGES2k initiative. The database gathers 692 records from 648 locations, including all continental regions and major ocean basins. The records are from trees, ice, sediment, corals, speleothems, documentary evidence, and other archives. They range in length from 50 to 2000 years, with a median of 547 years, while temporal resolution ranges from biweekly to centennial. Nearly half of the proxy time series are significantly correlated with HadCRUT4.2 surface temperature over the period 1850–2014. Global temperature composites show a remarkable degree of coherence between high- and low-resolution archives, with broadly similar patterns across archive types, terrestrial versus marine locations, and screening criteria. The database is suited to investigations of global and regional temperature variability over the Common Era, and is shared in the Linked Paleo Data (LiPD) format, including serializations in Matlab, R and Python.
    Repository Name: EPIC Alfred Wegener Institut
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    Growth of a deep-water, predatory fish is influenced by the productivity of a boundary current system (2015)
    Nature Publishing Group
    In:  EPIC3Nature Scientific Reports, Nature Publishing Group
    Details
    Publication Date: 2017-01-20
    Description: The effects of climate change on predatory fishes in deep shelf areas are difficult to predict because complex processes may govern food availability and temperature at depth. We characterised the net impact of recent environmental changes on hapuku (Polyprion oxygeneios), an apex predator found in continental slope habitats (〉200 m depth) by using dendrochronology techniques to develop a multi-decadal record of growth from otoliths. Fish were sampled off temperate south-western Australia, a region strongly influenced by the Leeuwin Current, a poleward-flowing, eastern boundary current. The common variance among individual growth records was relatively low (3.4%), but the otolith chronology was positively correlated (r = 0.61, p 〈 0.02) with sea level at Fremantle, a proxy for the strength of the Leeuwin Current. The Leeuwin Current influences the primary productivity of shelf ecosystems, with a strong current favouring growth in hapuku. Leeuwin Current strength is predicted to decline under climate change models and this study provides evidence that associated productivity changes may flow through to higher trophic levels even in deep water habitats.
    Repository Name: EPIC Alfred Wegener Institut
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    Acidification reduced growth rate but not swimming speed of larval sea urchins (2015)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 5 (2015): 9764, doi:10.1038/srep09764.
    Description: Swimming behaviors of planktonic larvae impact dispersal and population dynamics of many benthic marine invertebrates. This key ecological function is modulated by larval development dynamics, biomechanics of the resulting morphology, and behavioral choices. Studies on ocean acidification effects on larval stages have yet to address this important interaction between development and swimming under environmentally-relevant flow conditions. Our video motion analysis revealed that pH covering present and future natural variability (pH 8.0, 7.6 and 7.2) did not affect age-specific swimming of larval green urchin Strongylocentrotus droebachiensis in still water nor in shear, despite acidified individuals being significantly smaller in size (reduced growth rate). This maintenance of speed and stability in shear was accompanied by an overall change in size-corrected shape, implying changes in swimming biomechanics. Our observations highlight strong evolutionary pressure to maintain swimming in a varying environment and the plasticity in larval responses to environmental change.
    Description: K.C. was supported by the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution (WHOI), with funding provided by the Coastal Ocean Institute, the Croucher Foundation, and the Royal Swedish Academy of Sciences. S.D. was financially supported by the Linnaeus Centre for Marine Evolutionary Biology at the University of Gothenburg (http://www.cemeb.science.gu.se/) and a Linnaeus grant from the Swedish Research Councils VR and Formas. Additional funding was provided from the European Seventh Framework Programme under grant agreement 265847.
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    Irreversibly increased nitrogen fixation in Trichodesmium experimentally adapted to elevated carbon dioxide (2015)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 6 (2015): 8155, doi:10.1038/ncomms9155.
    Description: Nitrogen fixation rates of the globally distributed, biogeochemically important marine cyanobacterium Trichodesmium increase under high carbon dioxide (CO2) levels in short-term studies due to physiological plasticity. However, its long-term adaptive responses to ongoing anthropogenic CO2 increases are unknown. Here we show that experimental evolution under extended selection at projected future elevated CO2 levels results in irreversible, large increases in nitrogen fixation and growth rates, even after being moved back to lower present day CO2 levels for hundreds of generations. This represents an unprecedented microbial evolutionary response, as reproductive fitness increases acquired in the selection environment are maintained after returning to the ancestral environment. Constitutive rate increases are accompanied by irreversible shifts in diel nitrogen fixation patterns, and increased activity of a potentially regulatory DNA methyltransferase enzyme. High CO2-selected cell lines also exhibit increased phosphorus-limited growth rates, suggesting a potential advantage for this keystone organism in a more nutrient-limited, acidified future ocean.
    Description: Grant support was provided by U.S. National Science Foundation OCE 1260490 and OCE 1143760 to D.A.H., E.A.W., and F.-X.F, and OCE 1260233, OCE OA 1220484, and G.B. Moore Foundation 3782 and 3934 to M.A.S.© The Author(s), [year].
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    Jurassic zircons from the Southwest Indian Ridge (2016)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 26260, doi:10.1038/srep26260.
    Description: The existence of ancient rocks in present mid-ocean ridges have long been observed but received less attention. Here we report the discovery of zircons with both reasonably young ages of about 5 Ma and abnormally old ages of approximate 180 Ma from two evolved gabbroic rocks that were dredged from the Southwest Indian Ridge (SWIR) in the Gallieni fracture zone. U–Pb and Lu–Hf isotope analyses of zircons were made using ion probe and conventional laser abrasion directly in petrographic thin sections. Young zircons and their host oxide gabbro have positive Hf isotope compositions (εHf = +15.7–+12.4), suggesting a highly depleted mantle beneath the SWIR. The spread εHf values (from−2.3 to−4.5) of abnormally old zircons, together with the unradiogenic Nd-Hf isotope of the host quartz diorite, appears to suggest an ancient juvenile magmatism along the rifting margin of the southern Gondwana prior to the opening of the Indian Ocean. A convincing explanation for the origin of the unusually old zircons is yet to surface, however, an update of the theory of plate tectonics would be expected with continuing discovery of ancient rocks in the mid-oceanic ridges and abyssal ocean basins.
    Description: This work was supported by the National Natural Science Foundation of China (41573046) to H.C. and the Chinese National Key Basic Research Program (2012CB417300) to H.Z.
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    Paleochannel and beach-bar palimpsest topography as initial substrate for coralligenous buildups offshore Venice, Italy (2017)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 1321, doi:10.1038/s41598-017-01483-z.
    Description: We provide a model for the genesis of Holocene coralligenous buildups occurring in the northwestern Adriatic Sea offshore Venice at 17–24 m depth. High-resolution geophysical surveys and underwater SCUBA diving reconnaissance revealed meandering shaped morphologies underneath bio-concretionned rocky buildups. These morphologies are inferred to have been inherited from Pleistocene fluvial systems reactivated as tidal channels during the post- Last Glacial Maximum transgression, when the study area was a lagoon protected by a sandy barrier. The lithification of the sandy fossil channel-levee systems is estimated to have occurred at ca. 7 cal. ka BP, likely due to the interaction between marine and less saline fluids related to onshore freshwater discharge at sea through a sealed water-table. The carbonate-cemented sandy layers served as nucleus for subsequent coralligenous buildups growth.
    Description: Funded by the Italian Ministry of Education, University and Research within the National Research Program 2011–2013.
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    El Niño increases the risk of lower Mississippi River flooding (2017)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 1772, doi:10.1038/s41598-017-01919-6.
    Description: Mississippi River floods rank among the costliest climate-related disasters in the world. Improving flood predictability, preparedness, and response at seasonal to decadal time-scales requires an understanding of the climatic controls that govern flood occurrence. Linking flood occurrence to persistent modes of climate variability like the El Niño-Southern Oscillation (ENSO) has proven challenging, due in part to the limited number of high-magnitude floods available for study in the instrumental record. To augment the relatively short instrumental record, we use output from the Community Earth System Model (CESM) Last Millennium Ensemble (LME) to investigate the dynamical controls on discharge extremes of the lower Mississippi River. We show that through its regional influence on surface water storage, the warm phase of ENSO preconditions the lower Mississippi River to be vulnerable to flooding. In the 6–12 months preceding a flood, El Niño generates a positive precipitation anomaly over the lower Mississippi basin that gradually builds up soil moisture and reduces the basin’s infiltration capacity, thereby elevating the risk of a major flood during subsequent rainstorms. Our study demonstrates how natural climate variability mediates the formation of extreme floods on one of the world’s principal commercial waterways, adding significant predictive ability to near- and long-term forecasts of flood risk.
    Description: This work was funded through the Postdoctoral Scholar Program of the Woods Hole Oceanographic Institution and the Voss Environmental Postdoctoral Fellows Program at Brown University.
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    Evidence for fungal and chemodenitrification based N2O flux from nitrogen impacted coastal sediments (2017)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 8 (2017): 15595, doi:10.1038/ncomms15595.
    Description: Although increasing atmospheric nitrous oxide (N2O) has been linked to nitrogen loading, predicting emissions remains difficult, in part due to challenges in disentangling diverse N2O production pathways. As coastal ecosystems are especially impacted by elevated nitrogen, we investigated controls on N2O production mechanisms in intertidal sediments using novel isotopic approaches and microsensors in flow-through incubations. Here we show that during incubations with elevated nitrate, increased N2O fluxes are not mediated by direct bacterial activity, but instead are largely catalysed by fungal denitrification and/or abiotic reactions (e.g., chemodenitrification). Results of these incubations shed new light on nitrogen cycling complexity and possible factors underlying variability of N2O fluxes, driven in part by fungal respiration and/or iron redox cycling. As both processes exhibit N2O yields typically far greater than direct bacterial production, these results emphasize their possibly substantial, yet widely overlooked, role in N2O fluxes, especially in redox-dynamic sediments of coastal ecosystems.
    Description: D.D.B. acknowledges support from the Max Planck Institute for Marine Microbiology. This work was supported by the National Science Foundation grants to W.Z. and S.D.W. (OCE-1260373) and to S.D.W. (EAR-1252161).
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    Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales (2017)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in The ISME Journal 11 (2017): 186–200, doi:10.1038/ismej.2016.95.
    Description: Reef-building corals are well regarded not only for their obligate association with endosymbiotic algae, but also with prokaryotic symbionts, the specificity of which remains elusive. To identify the central microbial symbionts of corals, their specificity across species and conservation over geographic regions, we sequenced partial SSU ribosomal RNA genes of Bacteria and Archaea from the common corals Stylophora pistillata and Pocillopora verrucosa across 28 reefs within seven major geographical regions. We demonstrate that both corals harbor Endozoicomonas bacteria as their prevalent symbiont. Importantly, catalyzed reporter deposition–fluorescence in situ hybridization (CARD–FISH) with Endozoicomonas-specific probes confirmed their residence as large aggregations deep within coral tissues. Using fine-scale genotyping techniques and single-cell genomics, we demonstrate that P. verrucosa harbors the same Endozoicomonas, whereas S. pistillata associates with geographically distinct genotypes. This specificity may be shaped by the different reproductive strategies of the hosts, potentially uncovering a pattern of symbiont selection that is linked to life history. Spawning corals such as P. verrucosa acquire prokaryotes from the environment. In contrast, brooding corals such as S. pistillata release symbiont-packed planula larvae, which may explain a strong regional signature in their microbiome. Our work contributes to the factors underlying microbiome specificity and adds detail to coral holobiont functioning.
    Description: This research was supported by a KAUST-WHOI Post-doctoral Partnership Award to MN and a KAUST-WHOI Special Academic Partnership Funding Reserve Award to CRV and AA. Research in this study was further supported by baseline research funds to CRV by KAUST and NSF award OCE-1233612 to AA. RR was supported by the ct-PIRE Project, Robert Lemelson Fellowship, Graduate Research Award (UCLA), Women Divers Hall of Fame—Sister Fund Conservation Award and a Betty and E. P. Franklin Grant in Tropical Biology and Conservation.
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    Assessing the dynamics of organic aerosols over the North Atlantic Ocean (2017)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 45476, doi:10.1038/srep45476.
    Description: The influence of aerosols on climate is highly dependent on the particle size distribution, concentration, and composition. In particular, the latter influences their ability to act as cloud condensation nuclei, whereby they impact cloud coverage and precipitation. Here, we simultaneously measured the concentration of aerosols from sea spray over the North Atlantic on board the exhaust-free solar-powered vessel “PlanetSolar”, and the sea surface physico-chemical parameters. We identified organic-bearing particles based on individual particle fluorescence spectra. Organic-bearing aerosols display specific spatio-temporal distributions as compared to total aerosols. We propose an empirical parameterization of the organic-bearing particle concentration, with a dependence on water salinity and sea-surface temperature only. We also show that a very rich mixture of organic aerosols is emitted from the sea surface. Such data will certainly contribute to providing further insight into the influence of aerosols on cloud formation, and be used as input for the improved modeling of aerosols and their role in global climate processes.
    Description: We gratefully acknowledge the financial support by the H. Dudley Wright and the Henri Moser Foundations, the Rector’s Office and the Institute for Environmental Sciences at the University of Geneva, as well as a generous anonymous donator.
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    Photochemical alteration of organic carbon draining permafrost soils shifts microbial metabolic pathways and stimulates respiration (2017)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 8 (2017): 772, doi:10.1038/s41467-017-00759-2.
    Description: In sunlit waters, photochemical alteration of dissolved organic carbon (DOC) impacts the microbial respiration of DOC to CO2. This coupled photochemical and biological degradation of DOC is especially critical for carbon budgets in the Arctic, where thawing permafrost soils increase opportunities for DOC oxidation to CO2 in surface waters, thereby reinforcing global warming. Here we show how and why sunlight exposure impacts microbial respiration of DOC draining permafrost soils. Sunlight significantly increases or decreases microbial respiration of DOC depending on whether photo-alteration produces or removes molecules that native microbial communities used prior to light exposure. Using high-resolution chemical and microbial approaches, we show that rates of DOC processing by microbes are likely governed by a combination of the abundance and lability of DOC exported from land to water and produced by photochemical processes, and the capacity and timescale that microbial communities have to adapt to metabolize photo-altered DOC.
    Description: Funding for this work was provided by NSF grants OPP 1023270, 1022876, CAREER 1351745, DEB 1147378, 1347042, 0639790, 1147336, 1026843, PLR 1504006, DOE-JGI-CSP 1782, and the Camille and Henry Dreyfus Foundation Postdoctoral Program in Environmental Chemistry.
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    Defining a critical period for inhibitory circuits within the somatosensory cortex (2017)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 7271, doi:10.1038/s41598-017-07400-8.
    Description: Although experience-dependent changes in brain inhibitory circuits are thought to play a key role during the “critical period” of brain development, the nature and timing of these changes are poorly understood. We examined the role of sensory experience in sculpting an inhibitory circuit in the primary somatosensory cortex (S1) of mice by using optogenetics to map the connections between parvalbumin (PV) expressing interneurons and layer 2/3 pyramidal cells. Unilateral whisker deprivation decreased the strength and spatial range of inhibitory input provided to pyramidal neurons by PV interneurons in layers 2/3, 4 and 5. By varying the time when sensory input was removed, we determined that the critical period closes around postnatal day 14. This yields the first precise time course of critical period plasticity for an inhibitory circuit.
    Description: This work was supported by a fellowship from NUS to SQL, A*STAR intramural funding for the Integrative Neuroscience Programme, Singapore Institute for Clinical Sciences for JCGS, and a Competitive Research Programme (CRP) grant from the National Research Foundation of Singapore (NRF Grant Number 2008 NRF-CRP 002-082).
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    Climate oscillations reflected within the microbiome of Arabian Sea sediments (2017)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 6040, doi:10.1038/s41598-017-05590-9.
    Description: Selection of microorganisms in marine sediment is shaped by energy-yielding electron acceptors for respiration that are depleted in vertical succession. However, some taxa have been reported to reflect past depositional conditions suggesting they have experienced weak selection after burial. In sediments underlying the Arabian Sea oxygen minimum zone (OMZ), we performed the first metagenomic profiling of sedimentary DNA at centennial-scale resolution in the context of a multi-proxy paleoclimate reconstruction. While vertical distributions of sulfate reducing bacteria and methanogens indicate energy-based selection typical of anoxic marine sediments, 5–15% of taxa per sample exhibit depth-independent stratigraphies indicative of paleoenvironmental selection over relatively short geological timescales. Despite being vertically separated, indicator taxa deposited under OMZ conditions were more similar to one another than those deposited in bioturbated intervals under intervening higher oxygen. The genomic potential for denitrification also correlated with palaeo-OMZ proxies, independent of sediment depth and available nitrate and nitrite. However, metagenomes revealed mixed acid and Entner-Dourdoroff fermentation pathways encoded by many of the same denitrifier groups. Fermentation thus may explain the subsistence of these facultatively anaerobic microbes whose stratigraphy follows changing paleoceanographic conditions. At least for certain taxa, our analysis provides evidence of their paleoenvironmental selection over the last glacial-interglacial cycle.
    Description: his work was primarily supported by NSF MGG Grant #1357017 to MJLC, VG, and LG, and the KAUST-WHOI Special Academic Partnership Program OCRF-SP-WHOI-2013 (grants 7000000463 to XI and 7000000464 to MJLC). Additional financial support was provided via a C-DEBI grant #OCE-0939564 to WDO.
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    Pan-Antarctic analysis aggregating spatial estimates of Adélie penguin abundance reveals robust dynamics despite stochastic noise (2017)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 8 (2017): 832, doi:10.1038/s41467-017-00890-0.
    Description: Colonially-breeding seabirds have long served as indicator species for the health of the oceans on which they depend. Abundance and breeding data are repeatedly collected at fixed study sites in the hopes that changes in abundance and productivity may be useful for adaptive management of marine resources, but their suitability for this purpose is often unknown. To address this, we fit a Bayesian population dynamics model that includes process and observation error to all known Adélie penguin abundance data (1982–2015) in the Antarctic, covering 〉95% of their population globally. We find that process error exceeds observation error in this system, and that continent-wide “year effects” strongly influence population growth rates. Our findings have important implications for the use of Adélie penguins in Southern Ocean feedback management, and suggest that aggregating abundance across space provides the fastest reliable signal of true population change for species whose dynamics are driven by stochastic processes.
    Description: H.J.L., C.C.-C., G.H., C.Y., and K.T.S. gratefully acknowledge funding provided by US National Aeronautics and Space Administration Award No. NNX14AC32G and U.S. National Science Foundation Office of Polar Programs Award No. NSF/OPP-1255058. S.J., L.L., M.M.H., Y.L., and R.J. gratefully acknowledge funding provided by US National Aeronautics and Space Administration Award No. NNX14AH74G. H.J.L., C.Y., S.J., Y.L., and R.J. gratefully acknowledge funding provided by U.S. National Science Foundation Office of Polar Programs Award No. NSF/PLR-1341548. S.J. gratefully acknowledges support from the Dalio Explore Fund.
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    Long-term passive acoustic recordings track the changing distribution of North Atlantic right whales (Eubalaena glacialis) from 2004 to 2014 (2017)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 13460, doi:10.1038/s41598-017-13359-3.
    Description: Given new distribution patterns of the endangered North Atlantic right whale (NARW; Eubalaena glacialis) population in recent years, an improved understanding of spatio-temporal movements are imperative for the conservation of this species. While so far visual data have provided most information on NARW movements, passive acoustic monitoring (PAM) was used in this study in order to better capture year-round NARW presence. This project used PAM data from 2004 to 2014 collected by 19 organizations throughout the western North Atlantic Ocean. Overall, data from 324 recorders (35,600 days) were processed and analyzed using a classification and detection system. Results highlight almost year-round habitat use of the western North Atlantic Ocean, with a decrease in detections in waters off Cape Hatteras, North Carolina in summer and fall. Data collected post 2010 showed an increased NARW presence in the mid-Atlantic region and a simultaneous decrease in the northern Gulf of Maine. In addition, NARWs were widely distributed across most regions throughout winter months. This study demonstrates that a large-scale analysis of PAM data provides significant value to understanding and tracking shifts in large whale movements over long time scales.
    Description: This research was funded and supported by many organizations, specified by projects as follows: Data recordings from region 1 were provided by K. Stafford and this research effort was funded by the National Science Foundation #NSF-ARC 0532611. Region 2 data were provided by D. K. Mellinger and S. Nieukirk, funded by National Oceanic and Atmospheric Agency (NOAA) and the Office of Naval Research (ONR) #N00014–03–1–0099, NOAA #NA06OAR4600100, US Navy #N00244-08-1-0029, N00244-09-1-0079, and N00244-10-1-0047.
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    Ocean convection linked to the recent ice edge retreat along east Greenland (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 9 (2018): 1287, doi:10.1038/s41467-018-03468-6.
    Description: Warm subtropical-origin Atlantic water flows northward across the Greenland-Scotland Ridge into the Nordic Seas, where it relinquishes heat to the atmosphere and gradually transforms into dense Atlantic-origin water. Returning southward along east Greenland, this water mass is situated beneath a layer of cold, fresh surface water and sea ice. Here we show, using measurements from autonomous ocean gliders, that the Atlantic-origin water was re-ventilated while transiting the western Iceland Sea during winter. This re-ventilation is a recent phenomenon made possible by the retreat of the ice edge toward Greenland. The fresh surface layer that characterises this region in summer is diverted onto the Greenland shelf by enhanced onshore Ekman transport induced by stronger northerly winds in fall and winter. Severe heat loss from the ocean offshore of the ice edge subsequently triggers convection, which further transforms the Atlantic-origin water. This re-ventilation is a counterintuitive occurrence in a warming climate, and highlights the difficulties inherent in predicting the behaviour of the complex coupled climate system.
    Description: Support for this work was provided by the Norwegian Research Council under Grant agreement no. 231647 (L.H. and K.V.), the Bergen Research Foundation under Grant BFS2016REK01 (K.V.), and the Centre for Climate Dynamics at the Bjerknes Centre through the FRESHWATER project (K.V.). Additional funding was provided by the Swiss National Science Foundation grants P2EZP2162267 and P300P2174307 (L.P.), the National Science Foundation grant OCE-1558742 (M.A.S.), the Norway Fulbright Foundation (K.V.), the Canada Fulbright Foundation (G.W.K.M.), and the Natural Sciences and Engineering Research Council of Canada (G.W.K.M.).
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    Tidal and diel orchestration of behaviour and gene expression in an intertidal mollusc (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 4917, doi:10.1038/s41598-018-23167-y.
    Description: Intertidal inhabitants are exposed to the 24-hour solar day, and the 12.4 hour rising and falling of the tides. One or both of these cycles govern intertidal organisms’ behaviour and physiology, yet little is known about the molecular clockworks of tidal rhythmicity. Here, we show that the limpet Cellana rota exhibits robust tidally rhythmic behaviour and gene expression. We assembled a de-novo transcriptome, identifying novel tidal, along with known circadian clock genes. Surprisingly, most of the putative circadian clock genes, lack a typical rhythmicity. We identified numerous tidally rhythmic genes and pathways commonly associated with the circadian clock. We show that not only is the behaviour of an intertidal organism in tune with the tides, but so too are many of its genes and pathways. These findings highlight the plasticity of biological timekeeping in nature, strengthening the growing notion that the role of ‘canonical’ circadian clock genes may be more fluid than previously thought, as exhibited in an organism which has evolved in an environment where tidal oscillations are the dominant driving force.
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    Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 8128, doi:10.1038/s41598-018-26484-4.
    Description: The kakapo is a critically endangered, herbivorous parrot endemic to New Zealand. The kakapo hindgut hosts a dense microbial community of low taxonomic diversity, typically dominated by Escherichia fergusonii, and has proven to be a remarkably stable ecosystem, displaying little variation in core membership over years of study. To elucidate mechanisms underlying this robustness, we performed 16S rRNA gene-based co-occurrence network analysis to identify potential interactions between E. fergusonii and the wider bacterial community. Genomic and metagenomic sequencing were employed to facilitate interpretation of potential interactions observed in the network. E. fergusonii maintained very few correlations with other members of the microbiota, and isolates possessed genes for the generation of energy from a wide range of carbohydrate sources, including plant fibres such as cellulose. We surmise that this dominant microorganism is abundant not due to ecological interaction with other members of the microbiota, but its ability to metabolise a wide range of nutrients in the gut. This research represents the first concerted effort to understand the functional roles of the kakapo microbiota, and leverages metagenomic data to contextualise co-occurrence patterns. By combining these two techniques we provide a means for studying the diversity-stability hypothesis in the context of bacterial ecosystems.
    Description: This work was supported by funding from the Department of Conservation (DOC) as well as a University of Auckland Faculty Research Development Fund grant (9841 3626187) to MWT, and a University of Auckland Doctoral Scholarship to DWW.
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    Mesoscale eddies influence the movements of mature female white sharks in the Gulf Stream and Sargasso Sea (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 7363, doi:10.1038/s41598-018-25565-8.
    Description: Satellite-tracking of mature white sharks (Carcharodon carcharias) has revealed open-ocean movements spanning months and covering tens of thousands of kilometers. But how are the energetic demands of these active apex predators met as they leave coastal areas with relatively high prey abundance to swim across the open ocean through waters often characterized as biological deserts? Here we investigate mesoscale oceanographic variability encountered by two white sharks as they moved through the Gulf Stream region and Sargasso Sea in the North Atlantic Ocean. In the vicinity of the Gulf Stream, the two mature female white sharks exhibited extensive use of the interiors of clockwise-rotating anticyclonic eddies, characterized by positive (warm) temperature anomalies. One tagged white shark was also equipped with an archival tag that indicated this individual made frequent dives to nearly 1,000 m in anticyclones, where it was presumably foraging on mesopelagic prey. We propose that warm temperature anomalies in anticyclones make prey more accessible and energetically profitable to adult white sharks in the Gulf Stream region by reducing the physiological costs of thermoregulation in cold water. The results presented here provide valuable new insight into open ocean habitat use by mature, female white sharks that may be applicable to other large pelagic predators.
    Description: This work was supported by the WHOI Ocean Life Institute and awards from NASA and NSF.
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    Author correction : Meridional heat transport variability induced by mesoscale processes in the subpolar North Atlantic (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 9 (2018): 2398, doi:10.1038/s41467-018-04809-1.
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    Keystone Arctic paleoceanographic proxy association with putative methanotrophic bacteria (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 10610, doi:10.1038/s41598-018-28871-3.
    Description: Foraminifera in sediments exposed to gas-hydrate dissociation are not expected to have cellular adaptations that facilitate inhabitation of chemosynthesis-based ecosystems because, to date, there are no known endemic seep foraminifera. To establish if foraminifera inhabit sediments impacted by gas-hydrate dissociation, we examined the cellular ultrastructure of Melonis barleeanus (Williamson, 1858) from the Vestnesa gas hydrate province (Arctic Ocean, west of Svalbard at ~79 °N; ~1200-m depth; n = 4). From sediments with gas hydrate indicators, living M. barleeanus had unusual pore plugs composed of a thick, fibrous meshwork; mitochondria were concentrated at the cell periphery, under pore plugs. While there was no evidence of endosymbioses with prokaryotes, most M. barleeanus specimens were associated with what appear to be Type I methanotrophic bacteria. One foraminifer had a particularly large bolus of these microbes concentrated near its aperture. This is the first documented instance of bona fide living M. barleeanus in gas-hydrate sediments and first documentation of a foraminifer living in close association with putative methanotrophs. Our observations have implications to paleoclimate records utilizing this foundational foraminiferal species.
    Description: JMB was funded by a WHOI Independent Study Award (Mellon Grant), with partial support from NSF grant OCE-1634469. GP and CAGE 15-2 cruise were supported by the Research Council of Norway through CAGE Center for Excellence in Arctic Gas Hydrate Environment and Climate project 223259 and NORCRUST (project number 255150).
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    The solute carrier SLC9C1 is a Na+/H+-exchanger gated by an S4-type voltage-sensor and cyclic-nucleotide binding (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 9 (2018): 2809, doi:10.1038/s41467-018-05253-x.
    Description: Voltage-sensing (VSD) and cyclic nucleotide-binding domains (CNBD) gate ion channels for rapid electrical signaling. By contrast, solute carriers (SLCs) that passively redistribute substrates are gated by their substrates themselves. Here, we study the orphan sperm-specific solute carriers SLC9C1 that feature a unique tripartite structure: an exchanger domain, a VSD, and a CNBD. Voltage-clamp fluorimetry shows that SLC9C1 is a genuine Na+/H+ exchanger gated by voltage. The cellular messenger cAMP shifts the voltage range of activation. Mutations in the transport domain, the VSD, or the CNBD strongly affect Na+/H+ exchange, voltage gating, or cAMP sensitivity, respectively. Our results establish SLC9C1 as a phylogenetic chimaera that combines the ion-exchange mechanism of solute carriers with the gating mechanism of ion channels. Classic SLCs slowly readjust changes in the intra- and extracellular milieu, whereas voltage gating endows the Na+/H+ exchanger with the ability to produce a rapid pH response that enables downstream signaling events.
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    Sparsened neuronal activity in an optogenetically activated olfactory glomerulus (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 14955, doi:10.1038/s41598-018-33021-w.
    Description: Glomeruli are the functional units of olfactory information processing but little remains known about their individual unit function. This is due to their widespread activation by odor stimuli. We expressed channelrhodopsin-2 in a single olfactory sensory neuron type, and used laser stimulation and simultaneous in vivo calcium imaging to study the responses of a single glomerulus to optogenetic stimulation. Calcium signals in the neuropil of this glomerulus were representative of the sensory input and nearly identical if evoked by intensity-matched odor and laser stimuli. However, significantly fewer glomerular layer interneurons and olfactory bulb output neurons (mitral cells) responded to optogenetic versus odor stimuli, resulting in a small and spatially compact optogenetic glomerular unit response. Temporal features of laser stimuli were represented with high fidelity in the neuropil of the glomerulus and the mitral cells, but not in interneurons. Increases in laser stimulus intensity were encoded by larger signal amplitudes in all compartments of the glomerulus, and by the recruitment of additional interneurons and mitral cells. No spatial expansion of the glomerular unit response was observed in response to stronger input stimuli. Our data are among the first descriptions of input-output transformations in a selectively activated olfactory glomerulus.
    Description: Funded by the World Class Institute/National Research Foundation of Korea (KRF: WCI 2009-003) and NIH: DC005259 and NS099691 grants.
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    Sulphur and carbon cycling in the subduction zone mélange (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 15517, doi:10.1038/s41598-018-33610-9.
    Description: Subduction zones impose an important control on the geochemical cycling between the surficial and internal reservoirs of the Earth. Sulphur and carbon are transferred into Earth’s mantle by subduction of pelagic sediments and altered oceanic lithosphere. Release of oxidizing sulphate- and carbonate-bearing fluids modifies the redox state of the mantle and the chemical budget of subduction zones. Yet, the mechanisms of sulphur and carbon cycling within subduction zones are still unclear, in part because data are typically derived from arc volcanoes where fluid compositions are modified during transport through the mantle wedge. We determined the bulk rock elemental, and sulphur and carbon isotope compositions of exhumed ultramafic and metabasic rocks from Syros, Greece. Comparison of isotopic data with major and trace element compositions indicates seawater alteration and chemical exchange with sediment-derived fluids within the subduction zone channel. We show that small bodies of detached slab material are subject to metasomatic processes during exhumation, in contrast to large sequences of obducted ophiolitic sections that retain their seafloor alteration signatures. In particular, fluids circulating along the plate interface can cause sulphur mobilization during several stages of exhumation within high-pressure rocks. This takes place more pervasively in serpentinites compared to mafic rocks.
    Description: This project was supported by NSF-EAR grant 1324566 to E.M.S. and B.C.G., and NSF EAR award 1250470 to M.J.C. We acknowledge support by the German Research Foundation and the Open Access Publication Fund of the Freie Universität Berlin.
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    Minimum entropy decomposition : unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2014. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ISME Journal 9 (2015): 968–979, doi:10.1038/ismej.2014.195.
    Description: Molecular microbial ecology investigations often employ large marker gene datasets, for example, ribosomal RNAs, to represent the occurrence of single-cell genomes in microbial communities. Massively parallel DNA sequencing technologies enable extensive surveys of marker gene libraries that sometimes include nearly identical sequences. Computational approaches that rely on pairwise sequence alignments for similarity assessment and de novo clustering with de facto similarity thresholds to partition high-throughput sequencing datasets constrain fine-scale resolution descriptions of microbial communities. Minimum Entropy Decomposition (MED) provides a computationally efficient means to partition marker gene datasets into ‘MED nodes’, which represent homogeneous operational taxonomic units. By employing Shannon entropy, MED uses only the information-rich nucleotide positions across reads and iteratively partitions large datasets while omitting stochastic variation. When applied to analyses of microbiomes from two deep-sea cryptic sponges Hexadella dedritifera and Hexadella cf. dedritifera, MED resolved a key Gammaproteobacteria cluster into multiple MED nodes that are specific to different sponges, and revealed that these closely related sympatric sponge species maintain distinct microbial communities. MED analysis of a previously published human oral microbiome dataset also revealed that taxa separated by less than 1% sequence variation distributed to distinct niches in the oral cavity. The information theory-guided decomposition process behind the MED algorithm enables sensitive discrimination of closely related organisms in marker gene amplicon datasets without relying on extensive computational heuristics and user supervision.
    Description: AME was supported by a G. Unger Vetlesen Foundation grant to the Marine Biological Laboratory and the Alfred P Sloan Foundation.
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    The Kallisti Limnes, carbon dioxide-accumulating subsea pools (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 5 (2015): 12152, doi:10.1038/srep12152.
    Description: Natural CO2 releases from shallow marine hydrothermal vents are assumed to mix into the water column, and not accumulate into stratified seafloor pools. We present newly discovered shallow subsea pools located within the Santorini volcanic caldera of the Southern Aegean Sea, Greece, that accumulate CO2 emissions from geologic reservoirs. This type of hydrothermal seafloor pool, containing highly concentrated CO2, provides direct evidence of shallow benthic CO2 accumulations originating from sub-seafloor releases. Samples taken from within these acidic pools are devoid of calcifying organisms, and channel structures among the pools indicate gravity driven flow, suggesting that seafloor release of CO2 at this site may preferentially impact benthic ecosystems. These naturally occurring seafloor pools may provide a diagnostic indicator of incipient volcanic activity and can serve as an analog for studying CO2 leakage and benthic accumulations from subsea carbon capture and storage sites.
    Description: This research was supported by the Eurofleets Caldera 2012 Project (EU), a NASA Astrobiology Science & Technology for Exploring Planets grant #NNX09AB76G (USA), a CAREER Award grant #OCE-0955674 to R. Camilli from the National Science Foundation (USA), and IPGP (France).
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    Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 6 (2015): 8933, doi:10.1038/ncomms9933.
    Description: Microbial activity is one of the most important processes to mediate the flux of organic carbon from the ocean surface to the seafloor. However, little is known about the microorganisms that underpin this key step of the global carbon cycle in the deep oceans. Here we present genomic and transcriptomic evidence that five ubiquitous archaeal groups actively use proteins, carbohydrates, fatty acids and lipids as sources of carbon and energy at depths ranging from 800 to 4,950 m in hydrothermal vent plumes and pelagic background seawater across three different ocean basins. Genome-enabled metabolic reconstructions and gene expression patterns show that these marine archaea are motile heterotrophs with extensive mechanisms for scavenging organic matter. Our results shed light on the ecological and physiological properties of ubiquitous marine archaea and highlight their versatile metabolic strategies in deep oceans that might play a critical role in global carbon cycling.
    Description: his project is funded in part by the Gordon and Betty Moore Foundation Grant GBMF2609, National Science Foundation Grants OCE1038006 (G.J.D.) and OCE-1038055 (J.A.B), National Natural Science Foundation of China (grant no. 41506163), Natural Science Foundation of Guangdong Province (grant no. 2014A030310056), Shenzhen City (grant no. JCY20140828163633985 and KQCX2015032416053646) and SZU (grant no. 000066) (M.L.)
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    An integrated Pan-European perspective on coastal Lagoons management through a mosaic-DPSIR approach (2016)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 19400, doi:10.1038/srep19400.
    Description: A decision support framework for the management of lagoon ecosystems was tested using four European Lagoons: Ria de Aveiro (Portugal), Mar Menor (Spain), Tyligulskyi Liman (Ukraine) and Vistula Lagoon (Poland/Russia). Our aim was to formulate integrated management recommendations for European lagoons. To achieve this we followed a DPSIR (Drivers-Pressures-State Change-Impacts-Responses) approach, with focus on integrating aspects of human wellbeing, welfare and ecosystem sustainability. The most important drivers in each lagoon were identified, based on information gathered from the lagoons’ stakeholders, complemented by scientific knowledge on each lagoon as seen from a land-sea perspective. The DPSIR cycles for each driver were combined into a mosaic-DPSIR conceptual model to examine the interdependency between the multiple and interacting uses of the lagoon. This framework emphasizes the common links, but also the specificities of responses to drivers and the ecosystem services provided. The information collected was used to formulate recommendations for the sustainable management of lagoons within a Pan-European context. Several common management recommendations were proposed, but specificities were also identified. The study synthesizes the present conditions for the management of lagoons, thus analysing and examining the activities that might be developed in different scenarios, scenarios which facilitate ecosystem protection without compromising future generations.
    Description: This study was supported by the European Commission, under the 7th Framework Programme, through the collaborative research project LAGOONS (contract n° 283157); by European funds through COMPETE and by Portuguese funds through the national Foundation for Science and Technology – FCT (PEst-C/MAR/LA0017/2013). The post-Doc grant SFRH/BPD/41117/2007 (M Dolbeth) and the PhD grant SFRH/BD/79170/2011 (LP Sousa) supported by FCT are also acknowledged.
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    Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments (2016)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 7 (2016): 12881, doi:10.1038/ncomms12881.
    Description: Microorganisms control key biogeochemical pathways, thus changes in microbial diversity, community structure and activity can affect ecosystem response to environmental drivers. Understanding factors that control the proportion of active microbes in the environment and how they vary when perturbed is critical to anticipating ecosystem response to global change. Increasing supplies of anthropogenic nitrogen to ecosystems globally makes it imperative that we understand how nutrient supply alters active microbial communities. Here we show that nitrogen additions to salt marshes cause a shift in the active microbial community despite no change in the total community. The active community shift causes the proportion of dormant microbial taxa to double, from 45 to 90%, and induces diversity loss in the active portion of the community. Our results suggest that perturbations to salt marshes can drastically alter active microbial communities, however these communities may remain resilient by protecting total diversity through increased dormancy.
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    Expansion and contraction of the Indo-Pacific tropical rain belt over the last three millennia (2016)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 34485, doi:10.1038/srep34485.
    Description: The seasonal north-south migration of the intertropical convergence zone (ITCZ) defines the tropical rain belt (TRB), a region of enormous terrestrial and marine biodiversity and home to 40% of people on Earth. The TRB is dynamic and has been shown to shift south as a coherent system during periods of Northern Hemisphere cooling. However, recent studies of Indo-Pacific hydroclimate suggest that during the Little Ice Age (LIA; AD 1400–1850), the TRB in this region contracted rather than being displaced uniformly southward. This behaviour is not well understood, particularly during climatic fluctuations less pronounced than those of the LIA, the largest centennial-scale cool period of the last millennium. Here we show that the Indo-Pacific TRB expanded and contracted numerous times over multi-decadal to centennial scales during the last 3,000 yr. By integrating precisely-dated stalagmite records of tropical hydroclimate from southern China with a newly enhanced stalagmite time series from northern Australia, our study reveals a previously unidentified coherence between the austral and boreal summer monsoon. State-of-the-art climate model simulations of the last millennium suggest these are linked to changes in the structure of the regional manifestation of the atmosphere’s meridional circulation.
    Description: Funded by grants from the US National Science Foundation (NSF) Paleo Perspectives on Climate Change (P2C2) program (AGS-1103413), the Center for Global and Regional Environmental Research, and Cornell College (to R.F.D.); and the NSF P2C2 program (AGS-1203704 and AGS-1602455) and the Penzance and John P. Chase Memorial Endowed Funds at WHOI (to C.C.U.).
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    Seasonal variations of leaf and canopy properties tracked by ground-based NDVI imagery in a temperate forest (2017)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 1267, doi:10.1038/s41598-017-01260-y.
    Description: Changes in plant phenology affect the carbon flux of terrestrial forest ecosystems due to the link between the growing season length and vegetation productivity. Digital camera imagery, which can be acquired frequently, has been used to monitor seasonal and annual changes in forest canopy phenology and track critical phenological events. However, quantitative assessment of the structural and biochemical controls of the phenological patterns in camera images has rarely been done. In this study, we used an NDVI (Normalized Difference Vegetation Index) camera to monitor daily variations of vegetation reflectance at visible and near-infrared (NIR) bands with high spatial and temporal resolutions, and found that the infrared camera based NDVI (camera-NDVI) agreed well with the leaf expansion process that was measured by independent manual observations at Harvard Forest, Massachusetts, USA. We also measured the seasonality of canopy structural (leaf area index, LAI) and biochemical properties (leaf chlorophyll and nitrogen content). We found significant linear relationships between camera-NDVI and leaf chlorophyll concentration, and between camera-NDVI and leaf nitrogen content, though weaker relationships between camera-NDVI and LAI. Therefore, we recommend ground-based camera-NDVI as a powerful tool for long-term, near surface observations to monitor canopy development and to estimate leaf chlorophyll, nitrogen status, and LAI.
    Description: This research was supported by US Department of Energy Office of Biological and Environmental Research Grant DE-SC0006951, National Science Foundation Grants DBI-959333 and AGS-1005663, and the University of Chicago and the MBL Lillie Research Innovation Award to J.T. and China Scholarship Council (CSC) to H.Y.
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    Spiraling pathways of global deep waters to the surface of the Southern Ocean (2017)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 8 (2017): 172, doi:10.1038/s41467-017-00197-0.
    Description: Upwelling of global deep waters to the sea surface in the Southern Ocean closes the global overturning circulation and is fundamentally important for oceanic uptake of carbon and heat, nutrient resupply for sustaining oceanic biological production, and the melt rate of ice shelves. However, the exact pathways and role of topography in Southern Ocean upwelling remain largely unknown. Here we show detailed upwelling pathways in three dimensions, using hydrographic observations and particle tracking in high-resolution models. The analysis reveals that the northern-sourced deep waters enter the Antarctic Circumpolar Current via southward flow along the boundaries of the three ocean basins, before spiraling southeastward and upward through the Antarctic Circumpolar Current. Upwelling is greatly enhanced at five major topographic features, associated with vigorous mesoscale eddy activity. Deep water reaches the upper ocean predominantly south of the Antarctic Circumpolar Current, with a spatially nonuniform distribution. The timescale for half of the deep water to upwell from 30° S to the mixed layer is ~60–90 years.
    Description: V.T., L.D.T., and M.R.M. were supported by NSF OCE-1357072. A.K.M., H.F.D., and W.W. were supported by the RGCM program of the US Department of Energy under Contract DE-SC0012457. J.L.S. acknowledges NSF’s Southern Ocean Carbon and Climate Observations and Modeling project under NSF PLR-1425989, which partially supported L.D.T. and M.R.M. as well. C.O.D was supported by the National Aeronautics and Space Administration (NASA) under Award NNX14AL40G and by the Princeton Environmental Institute Grand Challenge initiative. A.R.G. was supported by a Climate and Global Change Postdoctoral Fellowship from the National Oceanic and Atmospheric Administration (NOAA). S.M.G. acknowledges the ongoing support of NOAA/GFDL for high-end ocean and climate-modeling activities. J.W. acknowledges support from NSF OCE-1234473.
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    An atmospheric chronology for the glacial-deglacial Eastern Equatorial Pacific (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 9 (2018): 3077, doi:10.1038/s41467-018-05574-x.
    Description: Paleoclimate reconstructions are only as good as their chronology. In particular, different chronological assumptions for marine sediment cores can lead to different reconstructions of ocean ventilation age and atmosphere−ocean carbon exchange history. Here we build the first high-resolution chronology that is free of the dating uncertainties common in marine sediment records, based on radiocarbon dating twigs found with computed tomography scans in two cores from the Eastern Equatorial Pacific (EEP). With this accurate chronology, we show that the ventilation ages of the EEP thermocline and intermediate waters were similar to today during the Last Glacial Maximum and deglaciation, in contradiction with previous studies. Our results suggest that the glacial respired carbon pool in the EEP was not significantly older than today, and that the deglacial strengthening of the equatorial Pacific carbon source was probably driven by low-latitude processes rather than an increased subsurface supply of upwelled carbon from high-latitude oceans.
    Description: The lab work at NOSAMS was supported by Ocean Ventures Fund from WHOI and an NOSAMS graduate internship granted to N.Z
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    Author Correction : Accuracy and precision of tidal wetland soil carbon mapping in the conterminous United States (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 15219, doi:10.1038/s41598-018-33283-4.
    Description: This Article corrects an error in Equation 1
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    Contribution of hurricane-induced sediment resuspension to coastal oxygen dynamics (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 8 (2018): 15740, doi:10.1038/s41598-018-33640-3.
    Description: Hurricanes passing over the ocean can mix the water column down to great depths and resuspend massive volumes of sediments on the continental shelves. Consequently, organic carbon and reduced inorganic compounds associated with these sediments can be resuspended from anaerobic portions of the seabed and re-exposed to dissolved oxygen (DO) in the water column. This process can drive DO consumption as sediments become oxidized. Previous studies have investigated the effect of hurricanes on DO in different coastal regions of the world, highlighting the alleviation of hypoxic conditions by extreme winds, which drive vertical mixing and re-aeration of the water column. However, the effect of hurricane-induced resuspended sediments on DO has been neglected. Here, using a diverse suite of datasets for the northern Gulf of Mexico, we find that in the few days after a hurricane passage, decomposition of resuspended shelf sediments consumes up to a fifth of the DO added to the bottom of the water column during vertical mixing. Despite uncertainty in this value, we highlight the potential significance of this mechanism for DO dynamics. Overall, sediment resuspension likely occurs over all continental shelves affected by tropical cyclones, potentially impacting global cycles of marine DO and carbon.
    Description: Support for J. Moriarty was provided by the USGS Mendenhall Program.
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    Arc-like magmas generated by mélange-peridotite interaction in the mantle wedge (2018)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 9 (2018): 2864, doi:10.1038/s41467-018-05313-2.
    Description: The mechanisms of transfer of crustal material from the subducting slab to the overlying mantle wedge are still debated. Mélange rocks, formed by mixing of sediments, oceanic crust, and ultramafics along the slab-mantle interface, are predicted to ascend as diapirs from the slab-top and transfer their compositional signatures to the source region of arc magmas. However, the compositions of melts that result from the interaction of mélanges with a peridotite wedge remain unknown. Here we present experimental evidence that melting of peridotite hybridized by mélanges produces melts that carry the major and trace element abundances observed in natural arc magmas. We propose that differences in nature and relative contributions of mélanges hybridizing the mantle produce a range of primary arc magmas, from tholeiitic to calc-alkaline. Thus, assimilation of mélanges into the wedge may play a key role in transferring subduction signatures from the slab to the source of arc magmas.
    Description: This project was supported by the WHOI Ocean Exploration Institute (OEI) 27071178 to V.L.R.; Previous related projects were supported by NSF EAR-1348063 and WHOI OEI to H.R.M.
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    Monitoring brain activity with protein voltage and calcium sensors (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 5 (2015): 10212, doi:10.1038/srep10212.
    Description: Understanding the roles of different cell types in the behaviors generated by neural circuits requires protein indicators that report neural activity with high spatio-temporal resolution. Genetically encoded fluorescent protein (FP) voltage sensors, which optically report the electrical activity in distinct cell populations, are, in principle, ideal candidates. Here we demonstrate that the FP voltage sensor ArcLight reports odor-evoked electrical activity in the in vivo mammalian olfactory bulb in single trials using both wide-field and 2-photon imaging. ArcLight resolved fast odorant-responses in individual glomeruli, and distributed odorant responses across a population of glomeruli. Comparisons between ArcLight and the protein calcium sensors GCaMP3 and GCaMP6f revealed that ArcLight had faster temporal kinetics that more clearly distinguished activity elicited by individual odorant inspirations. In contrast, the signals from both GCaMPs were a saturating integral of activity that returned relatively slowly to the baseline. ArcLight enables optical electrophysiology of mammalian neuronal population activity in vivo.
    Description: Supported by US NIH DC005259, WCI 2009-003 from the National Research Foundation of Korea, a James Hudson Brown – Alexander Brown Coxe fellowship from Yale University, and a Ruth L. Kirschstein National Research Service Award DC012981.
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    Seasonality in submesoscale turbulence (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 6 (2015): 6862, doi:10.1038/ncomms7862.
    Description: Although the strongest ocean surface currents occur at horizontal scales of order 100 km, recent numerical simulations suggest that flows smaller than these mesoscale eddies can achieve important vertical transports in the upper ocean. These submesoscale flows, 1–100 km in horizontal extent, take heat and atmospheric gases down into the interior ocean, accelerating air–sea fluxes, and bring deep nutrients up into the sunlit surface layer, fueling primary production. Here we present observational evidence that submesoscale flows undergo a seasonal cycle in the surface mixed layer: they are much stronger in winter than in summer. Submesoscale flows are energized by baroclinic instabilities that develop around geostrophic eddies in the deep winter mixed layer at a horizontal scale of order 1–10 km. Flows larger than this instability scale are energized by turbulent scale interactions. Enhanced submesoscale activity in the winter mixed layer is expected to achieve efficient exchanges with the permanent thermocline below.
    Description: J.C. and R.F. acknowledge financial support under grants ONR-N00014-09-1-0458 and NSF-OCE-1233832; J.M.K. under grants ONR-N00014-11-1-0165 and NSERC-327920-2006; J.G. under grant ONR-N00014-12-1-0105.
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    Multi-jet propulsion organized by clonal development in a colonial siphonophore (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 6 (2015): 8158, doi:10.1038/ncomms9158.
    Description: Physonect siphonophores are colonial cnidarians that are pervasive predators in many neritic and oceanic ecosystems. Physonects employ multiple, clonal medusan individuals, termed nectophores, to propel an aggregate colony. Here we show that developmental differences between clonal nectophores of the physonect Nanomia bijuga produce a division of labour in thrust and torque production that controls direction and magnitude of whole-colony swimming. Although smaller and less powerful, the position of young nectophores near the apex of the nectosome allows them to dominate torque production for turning, whereas older, larger and more powerful individuals near the base of the nectosome contribute predominantly to forward thrust production. The patterns we describe offer insight into the biomechanical success of an ecologically important and widespread colonial animal group, but, more broadly, provide basic physical understanding of a natural solution to multi-engine organization that may contribute to the expanding field of underwater-distributed propulsion vehicle design.
    Description: This work is a product of US National Science Foundation grant OCE-1155084 to K.R.S. and CBET-1511721 to J.H.C., OCE-1061182 to S.P.C. and OCE-1061628 to J.O.D.
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    Suction-based propulsion as a basis for efficient animal swimming (2015)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 6 (2015): 8790, doi:10.1038/ncomms9790.
    Description: A central and long-standing tenet in the conceptualization of animal swimming is the idea that propulsive thrust is generated by pushing the surrounding water rearward. Inherent in this perspective is the assumption that locomotion involves the generation of locally elevated pressures in the fluid to achieve the expected downstream push of the surrounding water mass. Here we show that rather than pushing against the surrounding fluid, efficient swimming animals primarily pull themselves through the water via suction. This distinction is manifested in dominant low-pressure regions generated in the fluid surrounding the animal body, which are observed by using particle image velocimetry and a pressure calculation algorithm applied to freely swimming lampreys and jellyfish. These results suggest a rethinking of the evolutionary adaptations observed in swimming animals as well as the mechanistic basis for bio-inspired and biomimetic engineered vehicles.
    Description: Funding for this research was provided by the US Office of Naval Research and the US National Science Foundation.
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    High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures (2015)
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    Publication Date: 2022-05-25
    Description: © International Society for Microbial Ecology, 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in The ISMEJournal 9 (2015): 2725–2739, doi:10.1038/ismej.2015.68.
    Description: The role of bacterioplankton in the cycling of marine dissolved organic matter (DOM) is central to the carbon and energy balance in the ocean, yet there are few model organisms available to investigate the genes, metabolic pathways, and biochemical mechanisms involved in the degradation of this globally important carbon pool. To obtain microbial isolates capable of degrading semi-labile DOM for growth, we conducted dilution to extinction cultivation experiments using seawater enriched with high molecular weight (HMW) DOM. In total, 93 isolates were obtained. Amendments using HMW DOM to increase the dissolved organic carbon concentration 4x (280 μM) or 10x (700 μM) the ocean surface water concentrations yielded positive growth in 4–6% of replicate dilutions, whereas 〈1% scored positive for growth in non-DOM-amended controls. The majority (71%) of isolates displayed a distinct increase in cell yields when grown in increasing concentrations of HMW DOM. Whole-genome sequencing was used to screen the culture collection for purity and to determine the phylogenetic identity of the isolates. Eleven percent of the isolates belonged to the gammaproteobacteria including Alteromonadales (the SAR92 clade) and Vibrio. Surprisingly, 85% of isolates belonged to the methylotrophic OM43 clade of betaproteobacteria, bacteria thought to metabolically specialize in degrading C1 compounds. Growth of these isolates on methanol confirmed their methylotrophic phenotype. Our results indicate that dilution to extinction cultivation enriched with natural sources of organic substrates has a potential to reveal the previously unsuspected relationships between naturally occurring organic nutrients and the microorganisms that consume them.
    Description: This research was funded by the Gordon and Betty Moore Foundation through Grant GBMF3298 to DJR and EFD, GBMF #3777 (to EFD) and NSF Science and Technology Center grant EF0424599 (to EFD), and the Simons Foundation (to EFD and DR).
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    Decrease in coccolithophore calcification and CO2 since the middle Miocene (2016)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 7 (2016): 10284, doi:10.1038/ncomms10284.
    Description: Marine algae are instrumental in carbon cycling and atmospheric carbon dioxide (CO2) regulation. One group, coccolithophores, uses carbon to photosynthesize and to calcify, covering their cells with chalk platelets (coccoliths). How ocean acidification influences coccolithophore calcification is strongly debated, and the effects of carbonate chemistry changes in the geological past are poorly understood. This paper relates degree of coccolith calcification to cellular calcification, and presents the first records of size-normalized coccolith thickness spanning the last 14 Myr from tropical oceans. Degree of calcification was highest in the low-pH, high-CO2 Miocene ocean, but decreased significantly between 6 and 4 Myr ago. Based on this and concurrent trends in a new alkenone εp record, we propose that decreasing CO2 partly drove the observed trend via reduced cellular bicarbonate allocation to calcification. This trend reversed in the late Pleistocene despite low CO2, suggesting an additional regulator of calcification such as alkalinity.
    Description: Funding for this research was provided by the European Research Council under grant UE-09-ERC-2009-STG-240222-PACE (HMS), the Principado de Asturias under award FC-13-COF13-044 (HMS) and a French ANR infrastructure project EMBRC-France (IP).
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    Extensive modulation of the fecal metagenome in children With Crohn’s disease during exclusive enteral nutrition (2016)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in American Journal of Gastroenterology 110 (2015): 1718–1729, doi:10.1038/ajg.2015.357.
    Description: Exploring associations between the gut microbiota and colonic inflammation and assessing sequential changes during exclusive enteral nutrition (EEN) may offer clues into the microbial origins of Crohn’s disease (CD). Fecal samples (n=117) were collected from 23 CD and 21 healthy children. From CD children fecal samples were collected before, during EEN, and when patients returned to their habitual diets. Microbiota composition and functional capacity were characterized using sequencing of the 16S rRNA gene and shotgun metagenomics. Microbial diversity was lower in CD than controls before EEN (P=0.006); differences were observed in 36 genera, 141 operational taxonomic units (OTUs), and 44 oligotypes. During EEN, the microbial diversity of CD children further decreased, and the community structure became even more dissimilar than that of controls. Every 10 days on EEN, 0.6 genus diversity equivalents were lost; 34 genera decreased and one increased during EEN. Fecal calprotectin correlated with 35 OTUs, 14 of which accounted for 78% of its variation. OTUs that correlated positively or negatively with calprotectin decreased during EEN. The microbiota of CD patients had a broader functional capacity than healthy controls, but diversity decreased with EEN. Genes involved in membrane transport, sulfur reduction, and nutrient biosynthesis differed between patients and controls. The abundance of genes involved in biotin (P=0.005) and thiamine biosynthesis decreased (P=0.017), whereas those involved in spermidine/putrescine biosynthesis (P=0.031), or the shikimate pathway (P=0.058), increased during EEN. Disease improvement following treatment with EEN is associated with extensive modulation of the gut microbiome.
    Description: The IBD team at Royal Hospital for Children, Glasgow, is supported by the Catherine McEwan Foundation and the Yorkhill IBD fund.
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    (Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans (2016)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 25527, doi:10.1038/srep25527.
    Description: Despite having serious clinical manifestations, Cellulosimicrobium cellulans remain under-reported with only three genome sequences available at the time of writing. Genome sequences of C. cellulans LMG16121, C. cellulans J36 and Cellulosimicrobium sp. strain MM were used to determine distribution of pathogenicity islands (PAIs) across C. cellulans, which revealed 49 potential marker genes with known association to human infections, e.g. Fic and VbhA toxin-antitoxin system. Oligonucleotide composition-based analysis of orthologous proteins (n = 791) across three genomes revealed significant negative correlation (P 〈 0.05) between frequency of optimal codons (Fopt) and gene G+C content, highlighting the G+C-biased gene conversion (gBGC) effect across Cellulosimicrobium strains. Bayesian molecular-clock analysis performed on three virulent PAI proteins (Fic; D-alanyl-D-alanine-carboxypeptidase; transposase) dated the divergence event at 300 million years ago from the most common recent ancestor. Synteny-based annotation of hypothetical proteins highlighted gene transfers from non-pathogenic bacteria as a key factor in the evolution of PAIs. Additonally, deciphering the metagenomic islands using strain MM’s genome with environmental data from the site of isolation (hot-spring biofilm) revealed (an)aerobic respiration as population segregation factor across the in situ cohorts. Using reference genomes and metagenomic data, our results highlight the emergence and evolution of PAIs in the genus Cellulosimicrobium.
    Description: The authors acknowledge funds from Department of Biotechnology (DBT) and National Bureau of Agriculturally Important Microorganisms (NBAIM). AS gratefully acknowledge National Bureau of Agriculturally Important Microorganisms (NBAIM) for providing research fellowship.
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    Coupled RNA-SIP and metatranscriptomics of active chemolithoautotrophic communities at a deep-sea hydrothermal vent (2016)
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    Publication Date: 2022-05-25
    Description: © The International Society for Microbial Ecology, 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ISME Journal 10 (2016): 1925–1938, doi:10.1038/ismej.2015.258.
    Description: The chemolithoautotrophic microbial community of the rocky subseafloor potentially provides a large amount of organic carbon to the deep ocean, yet our understanding of the activity and metabolic complexity of subseafloor organisms remains poorly described. A combination of metagenomic, metatranscriptomic, and RNA stable isotope probing (RNA-SIP) analyses were used to identify the metabolic potential, expression patterns, and active autotrophic bacteria and archaea and their pathways present in low-temperature hydrothermal fluids from Axial Seamount, an active submarine volcano. Metagenomic and metatranscriptomic results showed the presence of genes and transcripts for sulfur, hydrogen, and ammonium oxidation, oxygen respiration, denitrification, and methanogenesis, as well as multiple carbon fixation pathways. In RNA-SIP experiments across a range of temperatures under reducing conditions, the enriched 13C fractions showed differences in taxonomic and functional diversity. At 30 °C and 55 °C, Epsilonproteobacteria were dominant, oxidizing hydrogen and primarily reducing nitrate. Methanogenic archaea were also present at 55 °C, and were the only autotrophs present at 80 °C. Correspondingly, the predominant CO2 fixation pathways changed from the reductive tricarboxylic acid (rTCA) cycle to the reductive acetyl-CoA pathway with increasing temperature. By coupling RNA-SIP with meta-omics, this study demonstrates the presence and activity of distinct chemolithoautotrophic communities across a thermal gradient of a deep-sea hydrothermal vent.
    Description: This work was funded by the Gordon and Betty Moore Foundation Grant GBMF3297 and NSF Center for Dark Energy Biosphere Investigations (C-DEBI) (OCE-0939564). The data collected in this study is based upon work supported by the Schmidt Ocean Institute during cruise FK010-2013 aboard R/V Falkor.
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    Species-specific control of external superoxide levels by the coral holobiont during a natural bleaching event (2016)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 7 (2016): 13801, doi:10.1038/ncomms13801.
    Description: The reactive oxygen species superoxide (O2·−) is both beneficial and detrimental to life. Within corals, superoxide may contribute to pathogen resistance but also bleaching, the loss of essential algal symbionts. Yet, the role of superoxide in coral health and physiology is not completely understood owing to a lack of direct in situ observations. By conducting field measurements of superoxide produced by corals during a bleaching event, we show substantial species-specific variation in external superoxide levels, which reflect the balance of production and degradation processes. Extracellular superoxide concentrations are independent of light, algal symbiont abundance and bleaching status, but depend on coral species and bacterial community composition. Furthermore, coral-derived superoxide concentrations ranged from levels below bulk seawater up to ∼120 nM, some of the highest superoxide concentrations observed in marine systems. Overall, these results unveil the ability of corals and/or their microbiomes to regulate superoxide in their immediate surroundings, which suggests species-specific roles of superoxide in coral health and physiology.
    Description: This work was supported by a Postdoctoral Fellowship from the Ford Foundation (J.M.D.), the National Science Foundation under grants OCE 1225801 (J.M.D.) and OCE 1233612 (A.A.), the Ocean and Climate Change Institute of the Woods Hole Oceanographic Institution (C.M.H.), the Sidney Stern Memorial Trust (C.M.H. and A.A.) and an anonymous donor.
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    Created mangrove wetlands store belowground carbon and surface elevation change enables them to adjust to sea-level rise (2017)
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 1030, doi:10.1038/s41598-017-01224-2.
    Description: Mangrove wetlands provide ecosystem services for millions of people, most prominently by providing storm protection, food and fodder. Mangrove wetlands are also valuable ecosystems for promoting carbon (C) sequestration and storage. However, loss of mangrove wetlands and these ecosystem services are a global concern, prompting the restoration and creation of mangrove wetlands as a potential solution. Here, we investigate soil surface elevation change, and its components, in created mangrove wetlands over a 25 year developmental gradient. All created mangrove wetlands were exceeding current relative sea-level rise rates (2.6 mm yr−1), with surface elevation change of 4.2–11.0 mm yr−1 compared with 1.5–7.2 mm yr−1 for nearby reference mangroves. While mangrove wetlands store C persistently in roots/soils, storage capacity is most valuable if maintained with future sea-level rise. Through empirical modeling, we discovered that properly designed creation projects may not only yield enhanced C storage, but also can facilitate wetland persistence perennially under current rates of sea-level rise and, for most sites, for over a century with projected medium accelerations in sea-level rise (IPCC RCP 6.0). Only the fastest projected accelerations in sea-level rise (IPCC RCP 8.5) led to widespread submergence and potential loss of stored C for created mangrove wetlands before 2100.
    Description: Funding for this research was provided by the U.S. Environmental Protection Agency, Gulf Ecology Division; U.S. Geological Survey, Climate and Land Use Change R&D Program; and U.S. Geological Survey, Environments Program.
    Repository Name: Woods Hole Open Access Server
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    Epibionts dominate metabolic functional potential of Trichodesmium colonies from the oligotrophic ocean (2017)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ISME Journal 11 (2017): 2090–2101, doi:10.1038/ismej.2017.74.
    Description: Trichodesmium is a genus of marine diazotrophic colonial cyanobacteria that exerts a profound influence on global biogeochemistry, by injecting ‘new’ nitrogen into the low nutrient systems where it occurs. Colonies of Trichodesmium ubiquitously contain a diverse assemblage of epibiotic microorganisms, constituting a microbiome on the Trichodesmium host. Metagenome sequences from Trichodesmium colonies were analyzed along a resource gradient in the western North Atlantic to examine microbiome community structure, functional diversity and metabolic contributions to the holobiont. Here we demonstrate the presence of a core Trichodesmium microbiome that is modulated to suit different ocean regions, and contributes over 10 times the metabolic potential of Trichodesmium to the holobiont. Given the ubiquitous nature of epibionts on colonies, the substantial functional diversity within the microbiome is likely an integral facet of Trichodesmium physiological ecology across the oligotrophic oceans where this biogeochemically significant diazotroph thrives.
    Description: This research was funded by grants from the National Science Foundation to STD (OCE-1332912) and BASVM (OCE-1332898).
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    Tracing the Vedic Saraswati River in the Great Rann of Kachchh (2017)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 7 (2017): 5476, doi:10.1038/s41598-017-05745-8.
    Description: The lost Saraswati River mentioned in the ancient Indian tradition is postulated to have flown independently of the Indus River into the Arabian Sea, perhaps along courses of now defunct rivers such as Ghaggar, Hakra and Nara. The persistence of such a river during the Harappan Bronze Age and the Iron Age Vedic period is strongly debated. We drilled in the Great Rann of Kachchh (Kutch), an infilled gulf of the Arabian Sea, which must have received input from the Saraswati, if active. Nd and Sr isotopic measurements suggest that a distinct source may have been present before 10 ka. Later in Holocene, under a drying climate, sediments from the Thar Desert probably choked the signature of an independent Saraswati-like river. Alternatively, without excluding a Saraswati-like secondary source, the Indus and the Thar were the dominant sources throughout the post-glacial history of the GRK. Indus-derived sediment accelerated the infilling of GRK after ~6 ka when the Indus delta started to grow. Until its complete infilling few centuries ago, freshwater input from the Indus, and perhaps from the Ghaggar-Hakra-Nara, probably sustained a productive marine environment as well as navigability toward old coastal Harappan and historic towns in the region.
    Description: The drilling effort and subsequent study of the cores was funded by Department of Science and Technology (DST), Government of India sponsored research project to DMM (Project No. SR/S4/ES-21/Kachchh Window/P1) under the science of Shallow Subsurface Programme (SSS). N. Khonde gratefully acknowledges Indo-US Post-doctoral Fellowship sponsored by SERB-IUSSTF for research work at Woods Hole Oceanographic Institution.
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