ALBERT

Note: Contents 1 The Conifers Conifer Taxonomy Geographic Distribution and Biogeography Life History Ecological Tolerance Conifer Mating System, Life Cycle, and Reproduction The Largest, Tallest, and Oldest Organisms on the Planet Genetic Diversity Summary Part I Genomes 2 Genomes: Classical Era The Beginnings of Genome Research in Conifers Chromosome Number and Polyploidy Genome Size Karyotype Analysis Genome Content Organelle Genomes: Chloroplast and Mitochondria Size and Structure Gene Content Inheritance Variation Summary 3 Gene and Genome Sequencing in Conifers: Modern Era A Short History of DNA Sequencing in Conifers Expressed Sequence Tag Sequencing Gene Discovery Using Next-Generation Sequencing Conifer Reference Genome Sequences Sequencing, Assembly, and Annotation Strategies Summary Statistics of Published Conifer Genome Sequences Discovery of the Noncoding DNA Content of Conifer Genomes Discovery of the Number and Types of Coding Genes in Conifers Chloroplast and Mitochondrial Genome Sequencing Summary 4 Noncoding and Repetitive DNA Introduction Ribosomal DNA Tandem Repeats: Satellite, Minisatellite, and Microsatellite DNA Transposons and Retrotransposons Pseudogenes Summary 5 Gene Structure and Gene Families A Short History of Early Conifer Gene Sequencing Wood-Forming Genes Vegetative Growth Genes Floral Genes Light-Regulated Genes Defense-Related Genes Disease-Resistant Genes Summary 6 Gene Expression and the Transcriptome A Short History of Gene Expression Studies in Conifers Wood Formation Biotic Factors Abiotic Factors Seasonal Patterns Epigenetic Control of Gene Expression Summary 7 Proteomics and Metabolomics A Short History of Proteomic and Metabolomic Research in Conifers Wood Formation Biotic Factors Abiotic Factors Seed Development and Somatic Embryogenesis Summary Part II Variation 8 Phenotypic Variation in Natural Populations Introduction Definitions Terms for Describing the Identity of Experimental Plant Materials: Provenance, Population, Seed Source, and Accession Terms for Describing Patterns of Genetic Variation on the Natural Landscape: Cline, Race, and Ecotype Historical Perspectives Application of Common Garden Experiments Experimental Approaches and Analytical Methods Experimental Approaches Analytical Methods Dependent and Independent Variables Common Garden Testing Literature Amount, Distribution, and Pattern of Genetic Variation in Phenotypic Traits of Conifers Amount and Distribution of Genetic Variation Patterns of Variation Are Local Sources Best? Case Studies Pseudotsuga menziesii (Douglas-fir) Pinus Summary 9 Neutral Genetic Variation Introduction and Background Molecular Markers Used in the Study of Neutral Variation Three Conifer Genomes Purpose and Applications of Neutral Genetic Variation Studies General Diversity Results: Allozymes Variation Within Species Variation Within Populations Distribution of Variation Among Populations (Based on Polymorphic Loci only) Differences in Measures of Diversity Among Conifer Genera and Families Allozyme Summary General Diversity Results: Molecular Markers Organelle Markers Nuclear Markers Population Differentiation Factors Affecting Amount and Distribution of Genetic Variation Mating Systems Gene Flow Genetic Drift Case Studies Diversity, Population Structure, and Biogeography Conservation and Mating Systems Effects of Forest Management and Tree Improvement on Genetic Diversity Summary 10 Adaptive Genetic Variation A Short History of Adaptive Genetic Variation in Conifers General Trends in Patterns of Adaptive Genetic Diversity in Conifers Observed from Neutrality and FST Outlier Tests Detection of Nonneutral Genes in a Few Conifer Species Pinus taeda Pinus sylvestris Pinus mugo, P. uncinata, and P. uliginosa Pinus pinaster and P. halepensis Pinus radiata Pinus contorta Pinus massoniana and P. hwangshanensis Pinus lambertiana and Other Subgenus Strobus Species Pseudotsuga menziesii Larix Species Abies Species Picea Species Cryptomeria japonica and Taxodium distichum Summary 11 Quantitative Trait Dissection A Short History of Complex Trait Dissection in Conifers Pinus taeda Pinus elliottii Pinus radiata Pinus sylvestris Pinus pinaster Pinus contorta Pseudotsuga menziesii Picea ssp. Larix ssp. Cryptomeria japonica Summary 12 Landscape Genomics A Short History of Landscape Genomics Studies in Conifers Pinus Subgenus Pinus Pinus Subgenus Strobus Picea Abies and Larix Summary 13 Conservation Genetics A Brief Introduction to Conservation Genetics in Forestry Fragmentation Habitat Loss Forest Practice Disease Insects Climate Change Summary 14 Forest Health Introduction The Growing Relevance of Forest Health Genetic Variation in Forest Health Traits Insects and Disease Abiotic Stress Mechanisms of Resistance and Tolerance Case Studies Resistance to Pissodes strobi (White Pine Weevil) Found in Picea sitchensis (Sitka spruce) Resistance to an Introduced Pathogen (Phytophthora lateralis) in Chamaecyparis lawsoniana (Port-Orford-cedar) Resistance to Stem Rusts in North American White Pines and Southern Yellow Pines Summary Part III Evolution 15 Hybridization and Introgression Introduction Definitions and Background Definitions Background Approaches to Identifying Hybrids and Quantifying Levels of Introgression Evolving Insights Case Studies of Introgressive Hybridization in Conifers Pinus contorta (Lodgepole Pine) x P. banksiana (Jack Pine) Picea sitchensis (Sitka Spruce) x P. glauca (White Spruce) and P. engelmannii (Engelmann Spruce) x P. glauca Pinus taeda (Loblolly Pine) x P. echinata (Shortleaf Pine) Hybrid Speciation Artificial Hybrids Summary 16 Paleobotany, Taxonomic Classification, and Phylogenetics Introduction Paleobotany Taxonomic Classification Cupressus Pinus Phylogenetics Character Selection The Conifers and Related Gymnosperms Araucariaceae Cupressaceae Pinaceae Podocarpaceae Sciadopityaceae Taxaceae Summary 17 Comparative Genomics Introduction to Comparative Genomics Comparative Mapping Comparative Gene Content and Transcriptomics Comparative Genome Sequences Summary 18 Historical Perspective and Future Directions in Forest Genetics and Genomics Historical Perspective Current Situation Future Directions Primary Commercial Species (Group A) Appendix 1 Appendix 2 References Index

Note: Contents 1 Specific Features of Estuaries, Lagoons, Limans: Concepts and Terms / Petr Brovko and Ruben Kosyan 2 Estuaries and Lagoons of the Russian Arctic Seas / Vyacheslav Krylenko 3 Estuaries, Lagoons, and Limans of the Marginal Seas of Northeast Asia / Petr Brovko, Yuri Mikishin, and Tamara Ponomareva 4 Lagoons of the Black Sea / Vyacheslav Krylenko and Marina Krylenko 5 Lagoons of the Smallest Russian Sea / Marina Krylenko, Ruben Kosyan, and Vyacheslav Krylenko 6 Transboundary Lagoons of the Baltic Sea / Boris Chubarenko, Dmitriy Domnin, Svetlana Navrotskaya, Zhanna Stont, Vladimir Chechko, Valentina Bobykina, Vasiliy Pilipchuk, Konstantin Karmanov, Anastasea Domnina, Tatiana Bukanova, Victoria Topchaya, and Alexander Kileso 7 Neva Bay: A Technogenic Lagoon of the Eastern Gulf of Finland (Baltic Sea) / Daria Ryabchuk, Vladimir Zhamoida, Marina Orlova, Alexander Sergeev, Julia Bublichenko, Andrey Bublichenko, and Leontina Sukhacheva 8 The White Sea as an Estuarine System / Evgeniy Ignatov, Oleksiy Kalynychenko, and Anatoliy Pantiulin 9 The Diversity of Russian Estuaries / Ruben Kosyan, Petr Brovko, and Jean-Paul Ducrotoy Index

Note: The present and future of rock testing: highlighting the ISRM suggested methods Laboratory testing Suggested method for determination of the Schmidt Hammer rebound hardness: revised version Suggested methods for determining the dynamic strength parameters and mode-I fracture toughness of rock materials Suggested method for the determination of mode II fracture toughness Suggested method for reporting rock laboratory test data in electronic format Upgraded suggested method for determining sound velocity by ultrasonic pulse transmission technique Suggested method for determining the abrasivity of rock by the Cerchar Abrasivity test Suggested method for determining the mode I static fracture toughness using semi-circular bend specimen Suggested methods for determining the creep characteristics of rock Suggested method for laboratory determination of the shear strength of rock joints: revised version Suggested method for the needle penetration test Field testing Suggested method for rock fractures observations using a borehole digital optical televiewer Suggested method for measuring rock mass displacement using a sliding micrometer Suggested method for step-rate injection method for fracture in-situ properties (SIMFIP): Using a 3-Components Borehole Deformation Sensor Suggested Methods for rock stress estimation—Establishing a model for the in situ stress at a given site Monitoring Suggested method for monitoring rock displacements using the global positioning system (GPS) Suggested methods for rock failure criteria: general introduction Introduction to suggested methods for failure criteria Mohr–Coulomb failure criterion The Hoek–Brown failure criterion Three-dimensional failure criteria based on the Hoek–Brown criterion Drucker-Prager criterion Lade and modified Lade 3D rock strength criteria A failure criterion for rocks based on true triaxial testing A survey of 3D laser scanning techniques for application to rock mechanics and rock engineering

Note: Inhaltsverzeichnis: - The First Geometric POD of LEO Satellites - a Piece of History - Reference Frame From the Combination of a LEO Satellite with GPS Constellation and Ground Network of GPS Stations - Geometrical Model of the Earth’s Geo center Based on Temporal Gravity Field Maps - First Phase Clocks and Frequency Transfer - First Geometric POD of GPS and Galileo Satellites - Kinematics of IGS Stations - Reduced-Kinematic POD - First GPS Baseline in Space - the GRACE Mission - Geometrical Modeling of the Ionosphere and the Troposphere with LEO Orbit - Aerodynamics in Low LEO: A Novel Approach to Modeling Air Density Based on IGS TEC Maps - GPS Single-Frequency: From First cm-POD to Single Frequency GNSS-RO/R - Absolute Code Biases Based on the Ambiguity-Free Linear Combination - DCBs without TEC - LEO Near-Field Multipath and Antenna Effects - Probing the Flyby Anomaly Using Kinematic POD - Exotic Applications of Kinematic POD - Galileo-2: A Highly Accurate Dynamical GEO Reference Frame to Complement the TRF - Geometrical Representation of Gravity Field Determination

Note: Introduction -- Time and frequency metrology in the context of relativistic geodesy -- Chronometric geodesy: methods and applications -- Measuring the gravitational field in General Relativity: From deviation equations and the gravitational compass to relativistic clock gradiometry -- A Snapshot of J. L. Synge -- General Relativistic Gravity Gradiometry -- Reference-ellipsoid and normal gravity field in post-Newtonian geodesy -- Anholonomity in Pre and Relativistic Geodesy -- Epistemic relativity: An experimental approach to physics -- Use of geodesy and geophysics measurements to probe the gravitational interaction -- Operationalization of basic relativistic measurements -- Can spacetime curvature be used in future navigation systems? -- World-line perturbation theory -- On the applicability of the geodesic deviation equation in General Relativity -- Measurement of frame dragging with geodetic satellites based on gravity field models from CHAMP, GRACE and beyond -- Tests of General Relativity with the LARES Satellites