ALBERT

Description: At the 2nd German Future Earth Summit (28 to 29 January 2016) scientists from various disciplines and institutions as well as political and societal actors came together in Berlin ​to exchange views about pressing issues in global sustainability research. Main topics discussed at this 2nd Summit were cross-cutting capabilities in Future Earth: Observing, monitoring and data systems, Earth system modeling and social macrodynamics, Metrics and evaluation for human wellbeing and sustainable development, Theory and method development and Science-society interface. The conference summary report includes all outcomes of the different sessions as well as the results of numerous other events organised by the German academic community to further develop research in the context of Future Earth and WCRP.

Description: Wochenbericht vom 14.07.-20.07.2014 (Port Louis/Mauritius)

Description: Vegetation fires affect human infrastructures, ecosystems, global vegetation distribution, and atmospheric composition. However, the climatic, environmental, and socioeconomic factors that control global fire activity in vegetation are only poorly understood, and in various complexities and formulations are represented in global process-oriented vegetation-fire models. Data-driven model approaches such as machine learning algorithms have successfully been used to identify and better understand controlling factors for fire activity. However, such machine learning models cannot be easily adapted or even implemented within process-oriented global vegetation-fire models. To overcome this gap between machine learning-based approaches and process-oriented global fire models, we introduce a new flexible data-driven fire modelling approach here (Satellite Observations to predict FIre Activity, SOFIA approach version 1). SOFIA models can use several predictor variables and functional relationships to estimate burned area that can be easily adapted with more complex process-oriented vegetation-fire models. We created an ensemble of SOFIA models to test the importance of several predictor variables. SOFIA models result in the highest performance in predicting burned area if they account for a direct restriction of fire activity under wet conditions and if they include a land cover-dependent restriction or allowance of fire activity by vegetation density and biomass. The use of vegetation optical depth data from microwave satellite observations, a proxy for vegetation biomass and water content, reaches higher model performance than commonly used vegetation variables from optical sensors. We further analyse spatial patterns of the sensitivity between anthropogenic, climate, and vegetation predictor variables and burned area. We finally discuss how multiple observational datasets on climate, hydrological, vegetation, and socioeconomic variables together with data-driven modelling and model–data integration approaches can guide the future development of global process-oriented vegetation-fire models.

Description: The first concerted multi-model intercomparison of halogenated very short-lived substances (VSLS) has been performed, within the framework of the ongoing Atmospheric Tracer Transport Model Intercomparison Project (TransCom). Eleven global models or model variants participated, simulating the major natural bromine VSLS, bromoform (CHBr3) and dibromomethane (CH2Br2), over a 20-year period (1993-2012). The overarching goal of TransCom-VSLS was to provide a reconciled model estimate of the stratospheric source gas injection (SGI) of bromine from these gases, to constrain the current measurement-derived range, and to investigate inter-model differences due to emissions and transport processes.Models ran with standardised idealised chemistry, to isolate differences due to transport, and we investigated the sensitivity of results to a range of VSLS emission inventories. Models were tested in their ability to reproduce the observed seasonal and spatial distribution of VSLS at the surface, using measurements from NOAA’s long-term global monitoring network, and in the tropical troposphere, using recent aircraft measurements - including high altitude observations from the NASA Global Hawk platform. The models generally capture the seasonal cycle of surface CHBr3 and CH2Br2 well, with a strong model-measurement correlation (r ≥ 0.7) and a low sensitivity to the choice of emission inventory, at most sites. In a given model, the absolute model-measurement agreement is highly sensitive to the choice of emissions and inter-model differences are also apparent, even when using the same inventory, highlighting the challenges faced in evaluating such inventories at the global scale. Across the ensemble, most consistency is found within the tropics where most of the models (8 out of 11) achieve optimal agreement to surface CHBr3 observations using the lowest of the three CHBr3 emission inventories tested (similarly, 8 out of 11 models for CH2 Br2). In general, the models are able to reproduce well observations of CHBr3 and CH2 Br2 obtained in the tropical tropopause layer (TTL) at various locations throughout the Pacific. Zonal variability in VSLS loading in the TTL is generally consistent among models, with CHBr3 (and to a lesser extent CH2 Br2) most elevated over the tropical West Pacific during boreal winter. The models also indicate the Asian Monsoon during boreal summer to be an important pathway for VSLS reaching the stratosphere, though the strength of this signal varies considerably among models. We derive an ensemble climatological mean estimate of the stratospheric bromine SGI from CHBr3 and CH2 Br2 of 2.0 (1.2-2.5) ppt, ≫ 57% larger than the best estimate from the most recent World Meteorological Organization (WMO) Ozone Assessment Report. We find no evidence for a long-term, transport-driven trend in the stratospheric SGI of bromine over the simulation period. However, transport-driven inter-annual variability in the annual mean bromine SGI is of the order of a ±5%, with SGI exhibiting a strong positive correlation with ENSO in the East Pacific.

Description: Nitrous oxide (N2O) is a potent greenhouse gas, and it is involved in stratospheric ozone depletion. Its oceanic production is mainly influenced by dissolved nutrient and oxygen (O2) concentrations in the water column. Here we examined the seasonal and annual variations in dissolved N2O at the Boknis Eck (BE) Time Series Station located in Eckernförde Bay (southwestern Baltic Sea). Monthly measurements of N2O started in July 2005. We found a pronounced seasonal pattern for N2O with high concentrations (supersaturations) in winter and early spring and low concentrations (undersaturations) in autumn when hypoxic or anoxic conditions prevail. Unusually low N2O concentrations were observed during October 2016–April 2017, which was presumably a result of prolonged anoxia and the subsequent nutrient deficiency. Unusually high N2O concentrations were found in November 2017 and this event was linked to the occurrence of upwelling which interrupted N2O consumption via denitrification and potentially promoted ammonium oxidation (nitrification) at the oxic–anoxic interface. Nutrient concentrations (such as nitrate, nitrite and phosphate) at BE have been decreasing since the 1980s, but oxygen concentrations in the water column are still decreasing. Our results indicate a close coupling of N2O anomalies to O2 concentration, nutrients, and stratification. Given the long-term trends of declining nutrient and oxygen concentrations at BE, a decrease in N2O concentration, and thus emissions, seems likely due to an increasing number of events with low N2O concentrations.

Description: Knowledge of the parameter K (turbulent diffusivity/"mixing intensity") is a key to understand transport processes of matter and energy in the ocean. Especially the almost vertical component of K across the ocean stratification (diapycnal diffusivity) is vital for research on biogeochemical cycles or greenhouse gas budgets. Recent boost in precision of water velocity data that can be obtained from vessel-mounted acoustic instruments (vmADCP) allows identifying ocean regions of elevated diapycnal diffusivity during research cruises - in high horizontal resolution and without extra ship time needed. This contribution relates acoustic data from two cruises in the Tropical North East Atlantic Oxygen Minimum Zone to simultaneous field observations of diapycnal diffusivity: pointwise measurements by a microstructure profiler as well as one integrative value from a large scale Tracer Release Experiment.

Description: Gap flows and the stable boundary layer were studied in northwest Greenland during the aircraft-based Investigation of Katabatic Winds and Polynyas during Summer (IKAPOS) experiment in June 2010. The measurements were performed using the research aircraft POLAR 5 of Alfred Wegener Institute (AWI; Bremerhaven). Besides navigational and basic meteorological instrumentation, the aircraft was equipped with radiation and surface temperature sensors and a turbulence measurement system. In the area of Smith Sound at the southern end of the Nares Strait, a stable, but fully turbulent, boundary layer with strong winds of up to 22 m s−1 was found during conditions of synoptically induced northerly winds through the Nares Strait. Strong surface inversions were present in the lowest 100–200 m. As a consequence of channeling effects, a well-pronounced low-level jet system was documented for each of four flights. The wind maximum is located at 20–50-km distance from the exit of Smith Sound. The 3D boundary layer structure past this gap is studied in detail. The channeling process is consistent with gap flow theory. The flow through the gap and over the surrounding mountains leads to the lowering of isotropic surfaces and the acceleration of the flow. The orographically channeled flow through Smith Sound plays a key role for the formation of the North Water polynya being the largest ice-producing polynya in the Arctic.

Description: This paper describes an approach to derive probabilistic predictions of local winter storm damage occurrences from a global medium-range ensemble prediction system (EPS). Predictions of storm damage occurrences are subject to large uncertainty due to meteorological forecast uncertainty (typically addressed by means of ensemble predictions) and uncertainties in modelling weather impacts. The latter uncertainty arises from the fact that local vulnerabilities are not known in sufficient detail to allow for a deterministic prediction of damages, even if the forecasted gust wind speed contains no uncertainty. Thus, to estimate the damage model uncertainty, a statistical model based on logistic regression analysis is employed, relating meteorological analyses to historical damage records. A quantification of the two individual contributions (meteorological and damage model uncertainty) to the total forecast uncertainty is achieved by neglecting individual uncertainty sources and analysing resulting predictions. Results show an increase in forecast skill measured by means of a reduced Brier score if both meteorological and damage model uncertainties are taken into account. It is demonstrated that skilful predictions on district level (dividing the area of Germany into 439 administrative districts) are possible on lead times of several days. Skill is increased through the application of a proper ensemble calibration method, extending the range of lead times for which skilful damage predictions can be made.

Description: Nitric oxide (NO) is a short-lived intermediate of the oceanic nitrogen cycle, however, due to its high reactivity, measurements of dissolved NO in seawater are rare. Here we present an improved method to determine NO concentrations in discrete seawater samples. The set-up of our system consisted of a chemiluminescence NO analyser connected to a stripping unit. The limit of detection for our method was 5 pmol NO in aqueous solution which translates into 0.25 nmol L−1 when using a 20 mL seawater sample volume. Our method was applied to measure high resolution depth profiles of dissolved NO during a cruise to the eastern tropical South Pacific Ocean. Our method is fast and comparably easy to handle thus it opens the door for deciphering the distribution of NO in the ocean and it facilitates laboratory studies on NO pathways.

Description: Hydrocarbons are abundant in anoxic environments and pose biochemical challenges to their anaerobic degradation by microorganisms. Within the framework of the Priority Program 1319, investigations funded by the Deutsche Forschungsgemeinschaft on the anaerobic microbial degradation of hydrocarbons ranged from isolation and enrichment of hitherto unknown hydrocarbon-degrading anaerobic microorganisms, discovery of novel reactions, detailed studies of enzyme mechanisms and structures to process-oriented in situ studies. Selected highlights from this program are collected in this synopsis, with more detailed information provided by theme-focused reviews of the special topic issue on 'Anaerobic biodegradation of hydrocarbons' [this issue, pp. 1-244]. The interdisciplinary character of the program, involving microbiologists, biochemists, organic chemists and environmental scientists, is best exemplified by the studies on alkyl-/arylalkylsuccinate synthases. Here, research topics ranged from in-depth mechanistic studies of archetypical toluene-activating benzylsuccinate synthase, substrate-specific phylogenetic clustering of alkyl-/arylalkylsuccinate synthases (toluene plus xylenes, p-cymene, p-cresol, 2-methylnaphthalene, n-alkanes), stereochemical and co-metabolic insights into n-alkane-activating (methylalkyl) succinate synthases to the discovery of bacterial groups previously unknown to possess alkyl-/arylalkylsuccinate synthases by means of functional gene markers and in situ field studies enabled by state-of-the-art stable isotope probing and fractionation approaches. Other topics are Mo-cofactor-dependent dehydrogenases performing O-2-independent hydroxylation of hydrocarbons and alkyl side chains (ethylbenzene, p-cymene, cholesterol, n-hexadecane), degradation of p-alkylated benzoates and toluenes, glycyl radical-bearing 4-hydroxyphenylacetate decarboxylase, novel types of carboxylation reactions (for acetophenone, acetone, and potentially also benzene and naphthalene), W-cofactor-containing enzymes for reductive dearomatization of benzoyl-CoA (class II benzoyl-CoA reductase) in obligate anaerobes and addition of water to acetylene, fermentative formation of cyclohexanecarboxylate from benzoate, and methanogenic degradation of hydrocarbons.

Description: In this study, the stratospheric winter circulation in the coupled middle atmosphere ocean model MAECHAM5/MPI-OM, is analysed. Due to the dynamical and thermodynamical interaction with the ocean, the simulated atmospheric circulation is affected by the internal variability of the ocean. Differences of the stratospheric winter circulation between MAECHAM5/MPI-OM and former MAECHAM5 simulations may be attributed to the interactive ocean. This work is divided into three parts: first the climatology of the model is examined, then major Sudden Stratospheric Warmings (SSWs), and at last the relationship between these warmings and tropospheric blockings. To examine how the model reproduces the stratospheric winter circulation, the climatology of the zonal mean zonal wind and of planetary waves of zonal wavenumber 1 to 3, are carefully analysed and compared with those obtained from ERA-40 observations. While the zonal mean zonal wind is in good agreement with observations, amplitudes and phases of zonal wavenumber 2 are not well represented. Major SSWs are analysed because of the strong impact that such phenomena can have throughout the atmosphere, influencing the weather at the surface for several weeks after the onset of the warming. To identify major SSWs, a new algorithm based on the 10 hPa zonal mean zonal wind at 60°N, is developed. This is done because a comparison between a recent study by Charlton and Polvani (2007) and the Freie Universität Berlin climatology of mid-winter major SSWs, reveals a significant disagreement. The new algorithm is applied to two databases: one obtained from the model simulation and one from the ERA-40 assimilation. ERA-40 data are used for validation of MAECHAM5/MPI-OM. Comparison of the obtained frequencies of major SSWs shows that in the model a slightly higher number of events occurs. While in ERA-40 the average frequency is of 0.60 events per year, in the model it is of 0.70 events per year. The seasonal distributions show also that the highest number of major SSWs occurs in January and in February respectively for ERA-40 and model data, which is improved for MAECHAM5/MPI-OM compared to former MAECHAM5 simulations. In this work, unlike previous model studies, the state of the polar vortex is also examined during the pre-warming phase of major SSWs, by analysing the planetary wave activity, to determine the behaviour of waves with different zonal wavenumbers. Only planetary waves of zonal wavenumber 1 and 2 appear to have a key role in the development of major SSWs, with wavenumber-1 events being more frequent than wavenumber-2 events and a ratio of 57:13 similar as observed. Because of the influence of tropospheric blockings on major SSWs via alteration of planetary waves, a correlation analysis is performed to determine if the model represents this relationship well. It appears that Pacific blockings are correlated with wavenumber-2 major SSWs although a larger number of wavenumber-2 events would be necessary to make such assertion. No significant correlation is instead obtained for wavenumber-1 major warmings.

Description: This diploma thesis investigates variations in mixing ratios of very short lived substances (VSLS) during the DRIVE (Diurnal and Regional Variability of halogen Emissions) campaign in the tropical East Atlantic conducted during P399 2/3 from May to June 2010. The main focus lies on the diurnal and regional variability of three halocarbons influenced by meteorological factors at six 24 h stations. For this reason, regular ship measurements of temperature, wind, air pressure and humidity were complemented by radiosonde launches and air samples for the trace gas investigation. According to the radiosonde measurements a changeover between tropical and extra tropical air masses is observed at about 30° N. In contrast to the dominating trade wind regime with northeasterly winds, the ship cruise was mainly exposed to north-northwesterly winds with moderate weather conditions. In addition, the height of the atmospheric boundary layer is determined from the atmospheric profile, ranging from 500 m – 1700 m over open ocean. At coastal areas, especially at the Mauritanian upwelling, the boundary layer stays at the surface. For an evaluation of the wind measurements, wind speed and direction are compared to a high resolution ERA-Interim data set and, to NCEP/NCAR Reanalysis Project 1 Data (NNRP-1). In situ ship measurements show higher correlations for the wind speed (ERA-Interim: r = 0.91, NNRP-1: r = 0.79) than for the wind direction (ERA-Interim: r = 0.69, NNRP-1: r = 0.67). Recalculating the correlation coefficients for the same temporal resolution (6-hourly) results in an improvement of the correlations, indicating a good agreement between the observed and simulated wind. For the determination of potential source regions, the trajectory model HYSPLIT is used to investigate the origin of the observed air masses. The air mass history is analyzed 315 h backwards, indicating an air mass origin mainly above the North Atlantic during leg 2 but also above the Arctic Ocean during leg 3. During the 24 h stations close to the coast predominantly younger and local sources seem to influence the observed trace gas mixing ratios (mean CH2Br2/CHBr3 ratio: 0.4) with a partly strong dependency on the wind direction (r 〉 0.81). Especially the methyl iodide mixing ratios show a strong relation to air masses originating at the Banc d’Arguin National Park. In contrast to that, bromoform and dibromomethane show an increase of the mixing ratios connected to trajectories passing the coastal areas of Mauritania and Western Sahara. Increased mixing ratios of the observed trace gases concentrations with highest values of 8.9 ppt (bromoform), 3.31 ppt (dibromomethane) and 1.25 ppt (methyl iodide) are observed in combination with lowest boundary layer heights. With correlation coefficients of r = -0.90 (bromoform), r = -0.91 (dibromomethane) and r = -0.63 (methyl iodide) especially the mixing ratios of the longer lived bromocarbons seem to be strongly connected to the boundary layer height. However, the highest atmospheric bromoform mixing ratio of 9.8 ppt was not observed at the Mauritanian upwelling (leg 2), but close to Lisbon (leg 3) with the Rio Tejo as a potential source region. This implies the significance of regional sources as well as the consideration of the current lower atmospheric state for the variations of the VSLS mixing ratios

Description: Anthropogenic emissions of carbon dioxide (CO2) resulting from fossil fuel burning and changes in land use are affecting our marine environment; for example leading to ocean acidification or ocean warming. In order to understand how climate change will affect biological communities we need to understand all levels of biological responses. Community change as a response to environmental drivers are composed of three components: the physiological responses within an organism, described by its phenotypic plasticity or reaction norm and the ecological and evolutionary responses which are associated with changes on the species and genotype level, respectively. Moreover, there may be eco-evolutionary coupling, thus either ecological interactions such as competition that modify evolutionary responses to physico-chemical changes, or evolutionary change that feeds back to change ecological interactions. Here I study for the first time over the long-term (up to 220 generations) how among two competing phytoplankton species the different response types play out, and whether or not coupling of ecological and evolutionary processes can be found. Additionally I investigated the short-term inter- and intraspecific responses of three phytoplankton species to increased CO2 and what role competitive interactions play on the short-term in a two-species ´community´.

Description: Reanalysis data sets are widely used to understand atmospheric processes and past variability, and are often used to stand in as "observations" for comparisons with climate model output. Because of the central role of water vapor (WV) and ozone (O3) in climate change, it is important to understand how accurately and consistently these species are represented in existing global reanalyses. In this paper, we present the results of WV and O3 intercomparisons that have been performed as part of the SPARC (Stratosphere–troposphere Processes and their Role in Climate) Reanalysis Intercomparison Project (S-RIP). The comparisons cover a range of timescales and evaluate both inter-reanalysis and observation-reanalysis differences. We also provide a systematic documentation of the treatment of WV and O3 in current reanalyses to aid future research and guide the interpretation of differences amongst reanalysis fields. The assimilation of total column ozone (TCO) observations in newer reanalyses results in realistic representations of TCO in reanalyses except when data coverage is lacking, such as during polar night. The vertical distribution of ozone is also relatively well represented in the stratosphere in reanalyses, particularly given the relatively weak constraints on ozone vertical structure provided by most assimilated observations and the simplistic representations of ozone photochemical processes in most of the reanalysis forecast models. However, significant biases in the vertical distribution of ozone are found in the upper troposphere and lower stratosphere in all reanalyses. In contrast to O3, reanalysis estimates of stratospheric WV are not directly constrained by assimilated data. Observations of atmospheric humidity are typically used only in the troposphere, below a specified vertical level at or near the tropopause. The fidelity of reanalysis stratospheric WV products is therefore mainly dependent on the reanalyses' representation of the physical drivers that influence stratospheric WV, such as temperatures in the tropical tropopause layer, methane oxidation, and the stratospheric overturning circulation. The lack of assimilated observations and known deficiencies in the representation of stratospheric transport in reanalyses result in much poorer agreement amongst observational and reanalysis estimates of stratospheric WV. Hence, stratospheric WV products from the current generation of reanalyses should generally not be used in scientific studies.

Description: Laufzeit des Vorhabens:01.06.2015-30.11.2017

Description: Poseidon 533 – AIMAC (Atmosphere–ocean–island-biogeochemical interactions in the Macaronesian Archipelagos) investigated the influence of the Cape Verdes, the Canary Islands, and Madeira on the physics, chemistry and biology of the surrounding subtropical North- East Atlantic ocean. The air – sea exchange of halocarbons from marine sources impact tropospheric and stratospheric chemistry, and therewith air quality and human health. High oceanic and atmospheric concentrations of iodinated, brominated and chlorinated methanes are often found near coastlines. In particular, bromoform (CHBr3) was recently detected at unexpectedly high concentrations in seawater of subtropical coasts, e.g. at Miami and Tenerife beaches. Bromoform is produced naturally from macro algae and phytoplankton and is the major marine vector of organic bromine to the atmosphere. Together with dibromomethane (CH2Br2), it is the main contributor to natural stratospheric bromine, involved in ozone depletion. Bromoform is also a major product during disinfection of seawater for many industrial and recreational purposes and during desalination processes. While the bromoform production from phytoplankton generally leads to picomolar concentrations in seawater, macroalgal production yields nanomolar concentrations and disinfection processes involving seawater can increase concentrations to micromolar levels. The latter has led to the occasional application of this compound as tracer for the effluents of power plants and wastewater discharges. Other disinfection by-products (DBP) in the effluents can lead to unfavorable effects on the environment and human health. As bromoform shows large concentrations in urbanized and industrialized regions, the elevated concentrations at many coasts may have a major and increasing contribution to the global budget.. We hypothesize, that populated coastlines show elevated bromoform concentrations from disinfection activities, related to the amount of population and industrial activities. Coastal alongshore currents may additionally trap the compound inshore. Therefore, bromoform can be a good tracer of the terrestrial and anthropogenic signal in the island mass effect, which describes the increase in nutrients and biological productivity in the surrounding water masses of an island. POS533 investigated the bromoform distribution in ocean and atmosphere in the subtropical East Atlantic and the islands of Madeira, Tenerife, Gran Canaria and the Cape Verde Archipelago, considering physical and biogeochemical parameters, phytoplankton distribution and carbon chemistry. During the cruise new scientific tools where applied, to differentiate between the islands natural and anthropogenic interactions with ocean and atmosphere. The measurements deliver the first comprehensive biogeochemical data set of phytoplankton, microbiology, trace gases, carbon, oxygen and nutrient cycling from this region close the islands in exchange with the open ocean. Despite the novel knowledge, current climate chemistry and chemical transport models used to understand the anthropogenic signal of marine halocarbon emissions and their effects on tropospheric oxidation and stratospheric ozone will benefit from the expedition's dataset.

Description: We present consistent annual mean atmospheric histories and growth rates for the mainly anthropogenic halogenated compounds HCFC-22, HCFC-141b, HCFC-142b, HFC-134a, HFC-125, HFC-23, PFC-14 and PFC-116, which are all potentially useful oceanic transient tracers (tracers of water transport within the ocean), for the Northern and Southern Hemisphere with the aim of providing input histories of these compounds for the equilibrium between the atmosphere and surface ocean. We use observations of these halogenated compounds made by the Advanced Global Atmospheric Gases Experiment (AGAGE), the Scripps Institution of Oceanography (SIO), the Commonwealth Scientific and Industrial Research Organization (CSIRO), the National Oceanic and Atmospheric Administration (NOAA) and the University of East Anglia (UEA). Prior to the direct observational record, we use archived air measurements, firn air measurements and published model calculations to estimate the atmospheric mole fraction histories. The results show that the atmospheric mole fractions for each species, except HCFC-141b and HCFC-142b, have been increasing since they were initially produced. Recently, the atmospheric growth rates have been decreasing for the HCFCs (HCFC-22, HCFC-141b and HCFC-142b), increasing for the HFCs (HFC-134a, HFC-125, HFC-23) and stable with little fluctuation for the PFCs (PFC-14 and PFC-116) investigated here. The atmospheric histories (source functions) and natural background mole fractions show that HCFC-22, HCFC-141b, HCFC-142b, HFC-134a, HFC-125 and HFC-23 have the potential to be oceanic transient tracers for the next few decades only because of the recently imposed bans on production and consumption. When the atmospheric histories of the compounds are not monotonically changing, the equilibrium atmospheric mole fraction (and ultimately the age associated with that mole fraction) calculated from their concentration in the ocean is not unique, reducing their potential as transient tracers. Moreover, HFCs have potential to be oceanic transient tracers for a longer period in the future than HCFCs as the growth rates of HFCs are increasing and those of HCFCs are decreasing in the background atmosphere. PFC-14 and PFC-116, however, have the potential to be tracers for longer periods into the future due to their extremely long lifetimes, steady atmospheric growth rates and no explicit ban on their emissions. In this work, we also derive solubility functions for HCFC-22, HCFC-141b, HCFC-142b, HFC-134a, HFC-125, HFC-23, PFC-14 and PFC-116 in water and seawater to facilitate their use as oceanic transient tracers. These functions are based on the Clark–Glew–Weiss (CGW) water solubility function fit and salting-out coefficients estimated by the poly-parameter linear free-energy relationships (pp-LFERs). Here we also provide three methods of seawater solubility estimation for more compounds. Even though our intention is for application in oceanic research, the work described in this paper is potentially useful for tracer studies in a wide range of natural waters, including freshwater and saline lakes, and, for the more stable compounds, groundwaters.

Description: Most of the short-lived biogenic and anthropogenic chemical species that are emitted into the atmosphere break down efficiently by reaction with OH and do not reach the stratosphere. Here we show the existence of a pronounced minimum in the tropospheric column of ozone over the West Pacific, the main source region for stratospheric air, and suggest a corresponding minimum of the tropospheric column of OH. This has the potential to amplify the impact of surface emissions on the stratospheric composition compared to the impact when assuming globally uniform OH conditions. Specifically, the role of emissions of biogenic halogenated species for the stratospheric halogen budget and the role of increasing emissions of SO2 in Southeast Asia or from minor volcanic eruptions for the increasing stratospheric aerosol loading need to be reassessed in light of these findings. This is also important since climate change will further modify OH abundances and emissions of halogenated species. Our study is based on ozone sonde measurements carried out during the TransBrom cruise with the RV Sonne roughly along 140-150 degrees E in October 2009 and corroborating ozone and OH measurements from satellites, aircraft campaigns and FTIR instruments. Model calculations with the GEOS-Chem Chemistry and Transport Model (CTM) and the ATLAS CTM are used to simulate the tropospheric OH distribution over the West Pacific and the transport pathways to the stratosphere. The potential effect of the OH minimum on species transported into the stratosphere is shown via modeling the transport and chemistry of CH2Br2 and SO2.

Description: The sea surface microlayer (SML) is located at the air-sea interface, with microorganisms and organic matter in the SML influencing air-sea exchange processes. Yet understanding of the SML bacterial (bacterioneuston) community composition and assembly remains limited. Availability of organic matter, UV radiation and wind speed have previously been suggested to influence the community composition of bacterioneuston. Another mechanism potentially controlling bacterioneuston dynamics is bacterioplankton attached to gel-like particles that ascend through the water column into the SML. We analyzed the bacterial community composition, Transparent Exopolymer Particles (TEP) abundance and nutrient concentrations in the surface waters of the Peruvian upwelling region. The bacterioneuston and bacterioplankton communities were similar, suggesting a close spatial coupling. Four Bacteroidetes families were significantly enriched in the SML, two of them, the Flavobacteriaceae and Cryomorphaceae, were found to comprise the majority of SML-enriched operational taxonomic units (OTUs). The enrichment of these families was controlled by a variety of environmental factors. The SML-enriched bacterial families were negatively correlated with water temperature and wind speed in the SML and positively correlated with nutrient concentrations, salinity and TEP in the underlying water (ULW). The correlations with nutrient concentrations and salinity suggest that the enriched bacterial families were more abundant at the upwelling stations.

Description: The magnitude of nutrient and trace metal release from oxygen minimum zone (OMZ) sediments as well as their fate in the water column is of utmost importance for the pelagic nutrient budget and consequently for the ongoing expansion of OMZs. The major aim of this research cruise that was conducted within the framework of the Kiel collaborative research center SFB 754 (Climate – Biogeochemistry Interactions in the Tropical Ocean), was to study the effects of variable environmental conditions on benthic element turnover and exchange with the bottom water under natural conditions of austral fall/winter but also during experiments. This allows the quantitative simulation of benthic-pelagic nutrient- and trace metal budgets over longer time periods. The experimental investigations aimed to specifically resolve the contribution of sulfur bacteria and denitrifying foraminifera controlling benthic N, P and S fluxes. The investigation of mixing processes in the bottom boundary layer (BBL) and quantification of diapycnal and advective fluxes across the BBL and the stratified water column will be used to resolve the fate of these substances. The multidisciplinary study mainly focused on a depth transect at 12°S and is scientifically closely linked to the METEOR cruises M135, M136 and M138. In order to achieve the scientific goals an intense physical, biogeochemical and biological working program was conducted in the water column and at the seafloor accompanied by shipboard experiments. Studies in the water column comprised 92 CTD, 65 microstructure CTD, 18 TM-CTD and 14 in situ pump deployments. Sediment samples were obtained during 47 mulitple-corer and 12 Lander deployments. Additionally, lander deployments were performed to obtain time series of physical parameters and the current regime in water depths of 76 and 128m. The deployment of these instruments covered the time period of cruises M136 and M137. We slightly deviated from the cruise proposal and spent a minor amount of the station time along a zonal transect at 12.3°S in order study the biogeochemistry during eddy formation. Eddy formation cannot be predicted and hence planned in a cruise proposal, however their study bears a high scientific potential and is a central part of the SFB745 research activities. Due to the good weather conditions all deployments were successful, hence all the data and sample material aimed for has been achieved. It is to expect that as planned all scientific questions can be addressed. Especially, the joined synthesis including the data of the other recent SFB cruises M135, M136 und M138 and their comparison with the earlier SFB-cruises M77, M92 harbor a high scientific potential.

Description: Benthic nitrogen (N) cycling was investigated at six stations along a transect traversing the Peruvian oxygen minimum zone (OMZ) at 11 °S. An extensive dataset including porewater concentration profiles and in situ benthic fluxes of nitrate (NO3–), nitrite (NO2–) and ammonium (NH4+) was used to constrain a 1–D reaction–transport model designed to simulate and interpret the measured data at each station. Simulated rates of nitrification, denitrification, anammox and dissimilatory nitrate reduction to ammonium (DNRA) by filamentous large sulfur bacteria (e.g. Beggiatoa and Thioploca) were highly variable throughout the OMZ yet clear trends were discernible. On the shelf and upper slope (80 – 260 m water depth) where extensive areas of bacterial mats were present, DNRA dominated total N turnover (less-than-or-equals, slant 2.9 mmol N m–2 d–1) and accounted for greater-or-equal, slanted 65 % of NO3– + NO2– uptake by the sediments from the bottom water. Nonetheless, these sediments did not represent a major sink for dissolved inorganic nitrogen (DIN = NO3– + NO2– + NH4+) since DNRA reduces NO3– and, potentially NO2–, to NH4+. Consequently, the shelf and upper slope sediments were recycling sites for DIN due to relatively low rates of denitrification and high rates of ammonium release from DNRA and ammonification of organic matter. This finding contrasts with the current opinion that sediments underlying OMZs are a strong sink for DIN. Only at greater water depths (300 – 1000 m) did the sediments become a net sink for DIN. Here, denitrification was the major process (less-than-or-equals, slant 2 mmol N m–2 d–1) and removed 55 – 73 % of NO3– and NO2– taken up by the sediments, with DNRA and anammox accounting for the remaining fraction. Anammox was of minor importance on the shelf and upper slope yet contributed up to 62 % to total N2 production at the 1000 m station. The results indicate that the partitioning of oxidized N (NO3–, NO2–) into DNRA or denitrification is a key factor determining the role of marine sediments as DIN sinks or recycling sites. Consequently, high measured benthic uptake rates of oxidized N within OMZs do not necessarily indicate a loss of fixed N from the marine environment.

Description: The distribution and magnitude of benthic N2 fixation in OMZs, and its relevance for the community inhabiting these sediments was investigated. A possible coupling to sulfate reducers was determined by rate measurements of N2 fixation and sulfate reduction, as well as by molecular analysis in the respective environment. In sediments of the Peruvian OMZ, N2 fixation and sulfate reduction occurred throughout the sediment and depth profiles largely overlapped, suggesting a coupling of both processes. This coupling was further supported by the molecular analysis. In the Mauritanian OMZ N2 fixation activity often overlapped with sulfate reduction, as well as with ferrous iron concentrations. The molecular analysis confirmed the presence of sulfate- and iron-reducing bacteria. Burrowing organisms potentially create a biogeochemical zonation pattern in sediments that enhanced N2 fixation in deeper sediment layers. To examine the marine benthic diazotrophic diversity, samples from OMZs, methane seeps and brackish water sediments were used for high-throughput sequencing. Results showed a small diversity of diazotrophs among sites and a dominance of sulfate reducers. The redundancy analysis showed a positive correlation between diazotrophs and sulfate reduction. To conclude, the detection of benthic N2 fixation in OMZs, as well as the diversity study of benthic diazotrophs from different environments, shows that it is a ubiquitous process in the benthic environment. The global distribution of benthic diazotrophs, as revealed by the diversity study, highlights its previously underestimated role in the benthic N cycle, as well as in the marine N budgets. The controlling factors of diazotrophs in marine sediments are: abundance of sulfate reducers; organic matter content in the sediments; and sulfide concentration in the porewater, as a potential inhibitor.

Description: This manual represents a review of the potential sources and methods to be applied when providing prior information to Bayesian stock assessments and marine risk analysis. The manual is compiled as a product of the EC Framework 7 ECOKNOWS project (www.ecoknows.eu). The manual begins by introducing the basic concepts of Bayesian inference and the role of prior information in the inference. Bayesian analysis is a mathematical formalization of a sequential learning process in a probabilistic rationale. Prior information (also called ”prior knowledge”, ”prior belief”, or simply a ”prior”) refers to any existing relevant knowledge available before the analysis of the newest observations (data) and the information included in them. Prior information is input to a Bayesian statistical analysis in the form of a probability distribution (a prior distribution) that summarizes beliefs about the parameter concerned in terms of relative support for different values. Apart from specifying probable parameter values, prior information also defines how the data are related to the phenomenon being studied, i.e. the model structure. Prior information should reflect the different degrees of knowledge about different parameters and the interrelationships among them. Different sources of prior information are described as well as the particularities important for their successful utilization. The sources of prior information are classified into four main categories: (i) primary data, (ii) literature, (iii) online databases, and (iv) experts. This categorization is somewhat synthetic, but is useful for structuring the process of deriving a prior and for acknowledging different aspects of it. A hierarchy is proposed in which sources of prior information are ranked according to their proximity to the primary observations, so that use of raw data is preferred where possible. This hierarchy is reflected in the types of methods that might be suitable – for example, hierarchical analysis and meta-analysis approaches are powerful, but typically require larger numbers of observations than other methods. In establishing an informative prior distribution for a variable or parameter from ancillary raw data, several steps should be followed. These include the choice of the frequency distribution of observations which also determines the shape of prior distribution, the choice of the way in which a dataset is used to construct a prior, and the consideration related to whether one or several datasets are used. Explicitly modelling correlations between parameters in a hierarchical model can allow more effective use of the available information or more knowledge with the same data. Checking the literature is advised as the next approach. Stock assessment would gain much from the inclusion of prior information derived from the literature and from literature compilers such as FishBase (www.fishbase.org), especially in data-limited situations. The reader is guided through the process of obtaining priors for length–weight, growth, and mortality parameters from FishBase. Expert opinion lends itself to data-limited situations and can be used even in cases where observations are not available. Several expert elicitation tools are introduced for guiding experts through the process of expressing their beliefs and for extracting numerical priors about variables of interest, such as stock–recruitment dynamics, natural mortality, maturation, and the selectivity of fishing gears. Elicitation of parameter values is not the only task where experts play an important role; they also can describe the process to be modelled as a whole. Information sources and methods are not mutually exclusive, so some combination may be used in deriving a prior distribution. Whichever source(s) and method(s) are chosen, it is important to remember that the same data should not be used twice. If the 2 | ICES Cooperative Research Report No. 328 plan is to use the data in the analysis for which the prior distribution is needed, then the same data cannot be used in formulating the prior. The techniques studied and proposed in this manual can be further elaborated and fine-tuned. New developments in technology can potentially be explored to find novel ways of forming prior distributions from different sources of information. Future research efforts should also be targeted at the philosophy and practices of model building based on existing prior information. Stock assessments that explicitly account for model uncertainty are still rare, and improving the methodology in this direction is an important avenue for future research. More research is also needed to make Bayesian analysis of non-parametric models more accessible in practice. Since Bayesian stock assessment models (like all other assessment models) are made from existing knowledge held by human beings, prior distributions for parameters and model structures may play a key role in the processes of collectively building and reviewing those models with stakeholders. Research on the theory and practice of these processes will be needed in the future.

Description: This study presented for the first time the use of intact sediment cores in a continuous sediment-oil-flow-through (SOFT) system for investigating the degradation of petroleum under a simulated petroleum seepage.The biogeochemical response of sediments from hydrocarbon adapted sites like the Caspian Sea, North Alex Mud Volcano in the Eastern Mediterranean, the Santa Barbara Channel and non-adapted site like the Eckernfoerde Bay in the Baltic Sea to petroleum seepage was investigated and compared using the SOFT system.Distinct redox zonation was established in the sediment cores that evolved temporally and spatially during the upward migration of petroleum. Sulfate reduction and methanogenesis were identified as two major processes involved in the degradation of petroleum at seeps.

Description: The Baltic Sea salinity gradient provides an excellent system to investigate how seawater ion availability impacts calcification rates and the energetic costs of calcification. Additionally, the gradual changes in environmental conditions along this gradient also provide an excellent system to investigate how environmental salinity drives natural selection and local adaptation. In this thesis the effects of salinity on calcification rates and costs were investigated in mytilid mussels using laboratory experiments. In addition, the extent of local adaptation and salinity driven selection in Baltic mytilid larvae were also investigated as well as the mechanisms behind potential local adaptations. Findings suggest that calcification rates at low salinity are limited by calcium availability and the costs of calcification are higher at low salinity compared to high salinity. Costs of calcification in mussels were also found to constitute up to 58 % of available energy, considerably higher than previously estimated. Low salinity populations of Baltic mytilid mussels exhibit local adaptation to low salinities observed by better growth, lower mortality and higher settlement success at low salinities than high salinity adapted populations. The mechanisms behind these adaptations appear to be adaptive changes in intracellular osmolytes with low salinity populations containing higher concentrations of cations than high salinity populations. Overall, these findings suggest calcification is a costly process at low salinities and may be responsible for slow growth rates of mussels at low salinity. Additionally, salinity is a powerful selective force driving local adaptation and genetic divergence in Baltic Sea mussels and the mechanisms behind this adaptation appear to be changes in intracellular osmolytes and potentially, the cellular processes of calcification.

Description: Biofouling is predicted to increase in the course of global warming, making the study and monitoring of its ecological and economic consequences of great importance. The present study describes, for the first time, recruitment and successional patterns of fouling communities in the Caspian Sea. During one year, short-term panels (STP; replaced every 2 months) and long-term panels (LTP; retrieved after 4, 8 and 12 months) were deployed in the Western Iranian coast of the Caspian Sea. Temporal trends in both sets of panels were evaluated through Generalized Additive Models and discussed in light of the environmental variables registered in each sampling event. Recruitment and successional patterns observed at the community level were mainly driven by barnacles and bryozoans, the dominant taxa over the entire sampling period. Panel coverage, biomass and inorganic to organic matter ratio exhibited clear seasonal patterns in STP, following temperature and chlorophyll a trends. In LTP, coverage and biomass increased over the study period, while the inorganic to organic matter ratio peaked in summer and decreased during autumn and winter months. These results represent a baseline for future studies on biofouling communities in the Caspian Sea, where this topic has been completely neglected.

Description: Halocarbons are produced naturally in the oceans by biological and chemical processes. They are emitted from surface seawater into the atmosphere, where they take part in numerous chemical processes such as ozone destruction and the oxidation of mercury and dimethyl sulfide. Here we present oceanic and atmospheric halocarbon data for the Peruvian upwelling zone obtained during the M91 cruise onboard the research vessel METEOR in December 2012. Surface waters during the cruise were characterized by moderate concentrations of bromoform (CHBr3) and dibromomethane (CH2Br2) correlating with diatom biomass derived from marker pigment concentrations, which suggests this phytoplankton group is a likely source. Concentrations measured for the iodinated compounds methyl iodide (CH3I) of up to 35.4 pmol L−1, chloroiodomethane (CH2ClI) of up to 58.1 pmol L−1 and diiodomethane (CH2I2) of up to 32.4 pmol L−1 in water samples were much higher than previously reported for the tropical Atlantic upwelling systems. Iodocarbons also correlated with the diatom biomass and even more significantly with dissolved organic matter (DOM) components measured in the surface water. Our results suggest a biological source of these compounds as a significant driving factor for the observed large iodocarbon concentrations. Elevated atmospheric mixing ratios of CH3I (up to 3.2 ppt), CH2ClI (up to 2.5 ppt) and CH2I2 (3.3 ppt) above the upwelling were correlated with seawater concentrations and high sea-to-air fluxes. During the first part of the cruise, the enhanced iodocarbon production in the Peruvian upwelling contributed significantly to tropospheric iodine levels, while this contribution was considerably smaller during the second part.

Description: Highlights • Very high rates of dissimilatory nitrate reduction to ammonium by Thioploca. • Non-steady state model predicts Thioploca survival on intracellular nitrate reservoir. • Ammonium release by Thioploca may be coupled to pelagic N loss by anammox. • Thioploca may contribute to anammox long after bottom water nitrate disappearance. • Model indicates that benthic foraminifera account for 90% of benthic N2 production. Abstract Benthic N cycling in the Peruvian oxygen minimum zone (OMZ) was investigated at ten stations along 12oS from the middle shelf (74 m) to the upper slope (1024 m) using in situ flux measurements, sediment biogeochemistry and modelling. Middle shelf sediments were covered by mats of the filamentous bacteria Thioploca spp. and contained a large ‘hidden’ pool of nitrate that was not detectable in the porewater. This was attributed to a biological nitrate reservoir stored within the bacteria to oxidize sulfide to sulfate during ‘dissimilatory nitrate reduction to ammonium’ (DNRA). The extremely high rates of DNRA on the shelf (15.6 mmol m-2 d-1 of N), determined using an empirical steady-state model, could easily supply all the ammonium requirements for anammox in the water column. The model further showed that denitrification by foraminifera may account for 90% of N2 production at the lower edge of the OMZ. At the time of sampling, dissolved oxygen was below detection limit down to 400 m and the water body overlying the shelf had stagnated, resulting in complete depletion of nitrate and nitrite. A decrease in the biological nitrate pool was observed on the shelf during fieldwork concomitant with a rise in porewater sulfide levels in surface sediments to 2 mM. Using a non-steady state model to simulate this natural anoxia experiment, these observations were shown to be consistent with Thioploca surviving on a dwindling intracellular nitrate reservoir to survive the stagnation period. The model shows that sediments hosting Thioploca are able to maintain high ammonium fluxes for many weeks following stagnation, potentially sustaining pelagic N loss by anammox. In contrast, sulfide emissions remain low, reducing the economic risk to the Peruvian fishery by toxic sulfide plume development.

Description: Very short-lived substances (VSLS) contribute as source gases significantly to the tropospheric and stratospheric bromine loading. At present, an estimated 25% of stratospheric bromine is of oceanic origin. In this study, we investigate how climate change may impact the ocean- atmosphere flux of brominated VSLS, their atmospheric transport, and chemical transformations and evaluate how these changes will affect stratospheric ozone over the 21st century. Under the assumption of fixed ocean water concentrations and RCP6.0 scenario, we find an increase of the ocean- atmosphere flux of brominated VSLS of about 8-10% by the end of the 21st century compared to present day. A decrease in the tropospheric mixing ratios of VSLS and an increase in the lower stratosphere are attributed to changes in atmospheric chemistry and transport. Our model simulations reveal that this increase is counteracted by a corresponding reduction of inorganic bromine. Therefore the total amount of bromine from VSLS in the stratosphere will not be changed by an increase in upwelling. Part of the increase of VSLS in the tropical lower stratosphere results from an increase in the corresponding tropopause height. As the depletion of stratospheric ozone due to bromine depends also on the availability of chlorine, we find the impact of bromine on stratospheric ozone at the end of the 21st century reduced compared to present day. Thus, these studies highlight the different factors influencing the role of brominated VSLS in a future climate

Description: Highlights • A new bentho-pelagic transport mechanism of microorganisms is hypothesized • A bubble transport hypothesis was tested using a new gas bubble-collecting device • Bubble-mediated transport rate of methanotrophs was quantified at a gas vent • The Bubble Transport Mechanism may influence the pelagic methane sink Abstract The importance of methanotrophic microorganisms in the sediment and water column for balancing marine methane budgets is well accepted. However, whether methanotrophic populations are distinct for benthic and pelagic environments or are the result of exchange processes between the two, remains an area of active research. We conducted a field pilot study at the Rostocker Seep site (Coal Oil Point seep field, offshore California, USA) to test the hypothesis that bubble-mediated transport of methane-oxidizing microorganisms from the sediment into the water column is quantifiable. Measurements included dissolved methane concentration and showed a strong influence of methane seepage on the water-column methane distribution with strongly elevated sea surface concentrations with respect to atmospheric equilibrium (saturation ratio ~17,000%). Using Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (CARD FISH) analysis, aerobic methane oxidizing bacteria (MOB) were detected in the sediment and the water column, whereas anaerobic methanotrophs (ANME-2) were detected exclusively in the sediment. Critical data for testing the hypothesis were collected using a novel bubble catcher that trapped naturally emanating seep gas bubbles and any attached particles approximately 15 cm above the seafloor. Bubble catcher experiments were carried out directly above a natural bubble seep vent and at a nearby reference site, for which an “engineered” nitrogen bubble vent without sediment contact was created. Our experiments indicate the existence of a “Bubble Transport Mechanism”, which transports MOB from the sediment into the water column. In contrast, ANME-2 were not detected in the bubble catcher. The Bubble Transport Mechanism could have important implications for the connectivity between benthic and pelagic methanotrophic communities at methane seep sites.

Description: Direct dimethyl sulfide (DMS) flux measurements using eddy covariance have shown a suppression of gas transfer at medium to high wind speed. However, not all eddy covariance measurements show evidence of this suppression. Processes, such as wave-wind interaction and surfactants, have been postulated to cause this suppression. We measured DMS and carbon dioxide eddy covariance fluxes during the Asian summer monsoon in the western tropical Indian Ocean (July and August 2014). Both fluxes and their respective gas transfer velocities show signs of a gas transfer suppression above 10 m/s. Using a wind-wave interaction, we describe a flow separation process that could be responsible for a suppression of gas transfer. As a result we provide a Reynolds number-based parameterization, which states the likelihood of a gas transfer suppression for this cruise and previously published gas transfer data. Additionally, we compute the difference in the gas transfer velocities of DMS and CO2 to estimate the bubble-mediated gas transfer using a hybrid model with three whitecap parameterizations.

Description: We use isoprene and related field measurements from three different ocean data sets together with remotely sensed satellite data to model global marine isoprene emissions. We show that using monthly mean satellite-derived chl a concentrations to parameterize isoprene with a constant chl a normalized isoprene production rate underpredicts the measured oceanic isoprene concentration by a mean factor of 19 ± 12. Improving the model by using phytoplankton functional type dependent production values and by decreasing the bacterial degradation rate of isoprene in the water column results in only a slight underestimation (factor 1.7 ± 1.2). We calculate global isoprene emissions of 0.21 Tg C for 2014 using this improved model, which is twice the value calculated using the original model. Nonetheless, the sea-to-air fluxes have to be at least 1 order of magnitude higher to account for measured atmospheric isoprene mixing ratios. These findings suggest that there is at least one missing oceanic source of isoprene and, possibly, other unknown factors in the ocean or atmosphere influencing the atmospheric values. The discrepancy between calculated fluxes and atmospheric observations must be reconciled in order to fully understand the importance of marine-derived isoprene as a precursor to remote marine boundary layer particle formation.

Description: Coastal upwelling systems associated to the eastern continental margins of the Atlantic and Pacific Oceans are among the most productive realms of the marine ecosystems. Although they only occupy a small area, they play a globally important role in the cycling of nitrogen (N), phosphorus (P) and other biologically relevant elements. In subsurface waters of upwelling systems, oxygen minimum zones (OMZs) persist as a result of biological degradation and sluggish ventilation. Reduced oxygen concentrations influence redox sensitive nutrient inventories by promoting N loss processes and P release from the sediment. Hence, water masses upwelled to the surface feature low N:P ratios that deviate from canonical Redfield proportions of 16:1. Due to the excess P over N, upwelling systems are thought to favor the growth of dinitrogen (N2) fixing organism (diazotrophs) that could potentially restore inorganic nutrient ratios back to Redfield proportions and replenish the N deficit in those waters. Contrary to this assumption, the presence of nondiazotrophic phytoplankton utilizing nutrients in lower than Redfield proportions has been suggested to eliminate the niche for diazotrophs. Thus, the dominance of either Redfield or non-Redfield primary production is thought to determine the amount of N fixed in upwelling systems. In light of expanding OMZs and the predicted modification of nutrient inventories, this doctoral dissertation aimed to investigate the impact of changing N:P supply ratios on phytoplankton and organic matter composition. Moreover, the potential of primary producers to modify nutrient supply anomalies and their role in coupling or decoupling sources and sinks of fixed N was assessed. To accomplish this, nutrient manipulation experiments and a field study were conducted in the eastern tropical North Atlantic (ETNA) and eastern tropical South Pacific (ETSP).

Description: Oceanic dimethyl sulfide (DMS) is of interest due to its critical influence on atmospheric sulfur compounds in the marine atmosphere and its hypothesized significant role in global climate. High-resolution shipboard underway measurements of surface seawater DMS and the partial pressure of carbon dioxide (pCO2) were conducted in the Atlantic Ocean and Indian Ocean sectors of the Southern Ocean (SO), the southeast Indian Ocean, and the northwest Pacific Ocean from February to April 2014 during the 30th Chinese Antarctic Research Expedition. The SO, particularly in the region south of 58°S, had the highest mean surface seawater DMS concentration of 4.1 ± 8.3 nM (ranged from 0.1 to 73.2 nM) and lowest mean seawater pCO2 level of 337 ± 50 μatm (ranged from 221 to 411 μatm) over the entire cruise. Significant variations of surface seawater DMS and pCO2 in the seasonal ice zone (SIZ) of SO were observed, which are mainly controlled by biological process and sea ice activity. We found a significant negative relationship between DMS and pCO2 in the SO SIZ using 0.1° resolution, [DMS] seawater = -0.160 [pCO2] seawater + 61.3 (r2 = 0.594, n = 924, p 〈 0.001). We anticipate that the relationship may possibly be utilized to reconstruct the surface seawater DMS climatology in the SO SIZ. Further studies are necessary to improve the universality of this approach. Key Points: • The characteristics of surface water DMS and pCO2 distributions from the Southern Ocean to northwest Pacific Ocean are investigated • The correlations between DMS, pCO2, and environmental parameters are analyzed • Anticorrelation between DMS and pCO2 is found in the seasonal ice zone of the Southern Ocean

Description: Monthly zonal mean climatologies of atmospheric measurements from satellite instruments can have biases due to the non-uniform sampling of the atmosphere by the instruments. We characterize potential sampling biases in stratospheric trace gas climatologies of the Stratospheric Processes and their Role in Climate (SPARC) Data Initiative using chemical fields from a chemistry climate model simulation and sampling patterns from 16 satellite-borne instruments. The exercise is performed for the long-lived stratospheric trace gases O3 and H2O. Monthly sample biases for O3 exceed 10% for many instruments in the high latitude stratosphere and in the upper troposphere/lower stratosphere, while annual mean sampling biases reach values of up to 20% in the same regions for some instruments. Sampling biases for H2O are generally smaller than for O3, although still notable in the upper troposphere/lower stratosphere and Southern Hemisphere high latitudes. The most important mechanism leading to monthly sampling bias is the non-uniform temporal sampling of many instruments, i.e., the fact that for many instruments, monthly means are produced from measurements which span less than the full month in question. Similarly, annual mean sampling biases are well explained by non-uniformity in the month-to-month sampling by different instruments. Non-uniform sampling in latitude and longitude are shown to also lead to non-negligible sampling biases, which are most relevant for climatologies which are otherwise free of sampling biases due to non-uniform temporal sampling.

Description: Understanding the development of primary production is essential for projections of the global carbon cycle in the context of climate change. A chlorophyll a hindcast that serves as a primary production indicator was obtained by fitting in situ measurements of nitrate, chlorophyll a, and temperature. The resulting fitting functions were adapted to a modeled temperature field. The method was applied to observations from the Madeira Basin, in the northeastern part of the oligotrophic North Atlantic Subtropical Gyre and yielded a chlorophyll a field from 1989 to 2008 with a monthly resolution validated with remotely measured surface chlorophyll a data by SeaWiFS. The chlorophyll a hindcast determined with our method resolved the seasonal and interannual variability in the phytoplankton biomass of the euphotic zone as well as the deep chlorophyll maximum. Moreover, it will allow estimation of carbon uptake over long time scales.

Description: Volcanic activity in and around the year 536 CE led to severe cold and famine, and has been speculatively linked to large-scale societal crises around the globe. Using a coupled aerosol-climate model, with eruption parameters constrained by recently re-dated ice core records and historical observations of the aerosol cloud, we reconstruct the radiative forcing resulting from a sequence of two major volcanic eruptions in 536 and 540 CE. We estimate that the decadal-scale Northern Hemisphere (NH) extra-tropical radiative forcing from this volcanic “double event” was larger than that of any period in existing reconstructions of the last 1200 years. Earth system model simulations including the volcanic forcing show peak NH mean temperature anomalies reaching more than −2 °C, and show agreement with the limited number of available maximum latewood density temperature reconstructions. The simulations also produce decadal-scale anomalies of Arctic sea ice. The simulated cooling is interpreted in terms of probable impacts on agricultural production in Europe, and implies a high likelihood of multiple years of significant decreases in crop production across Scandinavia, supporting the theory of a connection between the 536 and 540 eruptions and evidence of societal crisis dated to the mid-6th century.

Description: The main purpose of R/V METEOR cruise M81/2AB was to obtain new insights into the controversially discussed origin and geodynamic evolution of the Caribbean Large Igneous Province (CLIP) and the Caribbean Plate using an interdisciplinary approach combining structural geology, geodynamics, magnetics, volcanology, sedimentology, petrology, magmatic geochemistry and geochronology. The rock sampling on M81/2AB achieved its major objectives through successful 1) stratigrafically-controlled sampling of a complete basement section of the northern Beata Rise with Kiel 6000 ROV (remote operated vehicle), 2) extensive dredge sampling of the southern Beata Rise, and 3) the first representative hard rock sampling of the Hess-Escarpment region. The wide range of intrusive, volcanic and sedimentary rocks recovered on M81/2AB represents the most detailed marine sampling of the CLIP and associated features to date. SIMRAD EM120 and PARASOUND were used to select sampling stations and to assess the structural geology of the region. Multi-beam seafloor mapping and preliminary analyses of the recovered samples suggest large-scale tectonic movements of the Beata Rise and the area north of the Hess-Escarpment and a volcanic rather than continental origin for the Nicaragua Rise north of the Hess-Escarpment. The magnetic studies were also highly successful with more than 7,300 km of magnetic profiles being acquired. Magnetic anomalies measured on four parallel profiles in the Colombia Basin suggest that the crust is oceanic, but seafloor spreading anomalies could not be correlated. Along the Hess Escarpment high amplitude magnetic anomalies associated with morphological features indicate a volcanic origin and basaltic composition of the crust, consistent with the seafloor morphology and recovered samples.

Description: Coccolithophores are a key functional group in terms of the pelagic production of calcium carbonate (calcite), although their contribution to shelf sea biogeochemistry, and how this relates to environmental conditions, is poorly constrained. Measurements of calcite production (CP) and coccolithophore abundance were made on the north-west European shelf to examine trends in coccolithophore calcification along natural gradients of carbonate chemistry, macronutrient availability and plankton composition. Similar measurements were also made in three bioassay experiments where nutrient (nitrate, phosphate) and pCO2 levels were manipulated. Nanoflagellates (〈 10 μm) dominated chlorophyll biomass and primary production (PP) at all but one sampling site, with CP ranging from 0.6 to 9.6 mmol C m−2 d−1. High CP and coccolithophore abundance occurred in a diatom bloom in fully mixed waters off Heligoland, but not in two distinct coccolithophore blooms in the central North Sea and Western English Channel. Coccolithophore abundance and CP showed no correlation with nutrient concentrations or ratios, while significant (p 〈 0.01) correlations between CP, cell-specific calcification (cell-CF) and irradiance in the water column highlighted how light availability exerts a strong control on pelagic CP. In the experimental bioassays, Emiliania-huxleyi-dominated coccolithophore communities in shelf waters (northern North Sea, Norwegian Trench) showed a strong response in terms of CP to combined nitrate and phosphate addition, mediated by changes in cell-CF and growth rates. In contrast, an offshore diverse coccolithophore community (Bay of Biscay) showed no response to nutrient addition, while light availability or mortality may have been more important in controlling this community. Sharp decreases in pH and a rough halving of calcite saturation states in the bioassay experiments led to decreased CP in the Bay of Biscay and northern North Sea, but not the Norwegian Trench. These decreases in CP were related to slowed growth rates in the bioassays at elevated pCO2 (750 μatm) relative to those in the ambient treatments. The combined results from our study highlight the variable coccolithophore responses to irradiance, nutrients and carbonate chemistry in north-west European shelf waters, which are mediated by changes in growth rates, cell-CF and species composition.

Description: Carbohydrates represent an important fraction of labile and semi-labile marine organic matter that is mainly comprised of exopolymeric substances derived from phytoplankton exudation and decay. This study investigates the composition of total combined carbohydrates (tCCHO; 〉1 kDa) and the community development of free-living (0.2–3 μm) and particle-associated (PA) (3–10 μm) bacterioplankton during a spring phytoplankton bloom in the southern North Sea. Furthermore, rates were determined for the extracellular enzymatic hydrolysis that catalyzes the initial step in bacterial organic matter remineralization. Concentrations of tCCHO greatly increased during bloom development, while the composition showed only minor changes over time. The combined concentration of glucose, galactose, fucose, rhamnose, galactosamine, glucosamine, and glucuronic acid in tCCHO was a significant factor shaping the community composition of the PA bacteria. The richness of PA bacteria greatly increased in the post-bloom phase. At the same time, the increase in extracellular β-glucosidase activity was sufficient to explain the observed decrease in tCCHO, indicating the efficient utilization of carbohydrates by the bacterioplankton community during the post-bloom phase. Our results suggest that carbohydrate concentration and composition are important factors in the multifactorial environmental control of bacterioplankton succession and the enzymatic hydrolysis of organic matter during phytoplankton blooms.

Description: Rapid evolution of non-native species can facilitate invasion success, but recent reviews indicate that such microevolution rarely yields expansion of the climatic niche in the introduced habitats. However, because some invasions originate from a geographically restricted portion of the native species range and its climatic niche, it is possible that the frequency, direction and magnitude of phenotypic evolution during invasion has been underestimated. We explored the utility of niche-shift analyses in the red seaweed Gracilaria vermiculophylla, which expanded its range from the northeastern coastline of Japan to North America, Europe and northwestern Africa within the last 100 years. A genetically-informed climatic niche shift analysis indicates that native source populations occur in colder and highly seasonal habitats, while most non-native populations typically occur in warmer, less seasonal habitats. This climatic niche expansion predicts that non-native populations evolved greater tolerance for elevated heat conditions relative to native source populations. We assayed 935 field-collected and 325 common-garden thalli from 40 locations and as predicted, non-native populations had greater tolerance for ecologically-relevant extreme heat (40°C) than did Japanese source populations. Non-native populations also had greater tolerance for cold and low-salinity stresses relative to source populations. The importance of local adaptation to warm temperatures during invasion was reinforced by evolution of parallel clines: populations from warmer, lower-latitude estuaries had greater heat tolerance than did populations from colder, higher-latitude estuaries in both Japan and eastern North America. We conclude that rapid evolution plays an important role in facilitating the invasion success of this and perhaps other non-native marine species. Genetically-informed ecological niche analyses readily generate clear predictions of phenotypic shifts during invasions, and may help to resolve debate over the frequency of niche conservatism versus rapid adaptation during invasion.

Description: The present work summarizes an approach to model mixed-mode 3D fatigue crack growth using the Virtual Crack Closure Technique (VCCT) without requiring re-meshing. It is demonstrated that the proposed approach can be used to simulate crack shapes that do not conform to the underlying mesh. The proposed approach relies solely on Paris Law characterization data to model delamination growth. Growth is determined as a post-processing step at the end of each increment, and hence no convergence issues associated with the progressive nodal release are encountered. This approach can be readily applied using standard solid element formulations and is implemented via an interface user element in Abaqus/Standard.

Description: Beschreibung:Discovery of novel natural products from soft corals were reported with many achievement so far. Soft coral associated bacteria have gained interest for several reasons such as for marine environmental protection and bio-mining of natural products from microorganism as compared to the animals. This work focused on communities of soft coral associated bacteria and on the search for new antimicrobial substances and new natural products as potential candidates for new drugs. Thus, soft coral associated bacteria were quite abundant and good sources of antimicrobial producers. The results from cultivation-based studies and sequence analysis of 16S rRNA genes of bacterial communities associated with the soft coral A. digitatum are reported in this study. A total of 251 isolates were identified as belonging to 4 phyla Firmicutes, Actinobacteria, Gammaproteobacteria, and Alphaproteobacteria. Four of these isolates may be new species, 2 isolates of Firmicutes, 1 Gammaproteobacterium and 1 Alphaproteobacterium. The high diversity of the bacterial communities and their antimicrobial activities suggest the contribution of the associated bacteria to the coral health. The results from antimicrobial tests demonstrated that A. digitatum was the source of various bacteria producing antimicrobial substances. Antimicrobial activity of the isolates were found only in BM medium (3%), only in GYM medium (2%) or in both of these media (44%). Quite significant, all isolates belonging to the two species B. amyloliquefaciens and B. methylotrophicus showed antimicrobial activities. Some strains of the two species inhibited all four test microorganisms. Chemical analyis revealed that the two Bacillus sp. strains produced various known cyclic peptides as well as presumably new metabolites. They represented highly potent producers of antimicrobials. All isolates of Actinobacteria produced antimicrobial substances, that inhibited particulary Gram-positive bacteria. In addition to a marine Micrococcus isolate, three isolates of Firmicutes were thoroughly studied in regard to analysis of production of new compounds. In addition a number of known compounds were identified, including several peptides. The metabolites of the four strains were examined and purified by using several HPLC systems. The biological activities of pure compounds were studied using antibacterial, antifungal, cytotoxic, and enzyme assays. Eleven compounds were purified and applied to bioassays. One of the proposed known cyclic peptides showed antimicrobial activity against both B. subtilis and E. coli, whereas the others showed inhibition of methicillin-resistant Staphylococcus aureus (MRSA) and phosphodiesterase 4β2. One of compounds, which were considered as new compounds, inhibited fungus Trichophyton rubrum and enzyme phosphodiesterase 4β2. The structure elucidations of all pure compounds are in progress.  

Description: We focus on the relation between seismic and total postseismic afterslip following the Maule Mw 8.8 earthquake on 2010 February 27 in central Chile. First, we calculate the cumulative slip released by aftershock seismicity. We do this by summing up the aftershock regions and slip estimated from scaling relations. Comparing the cumulative seismic slip with afterslip models we show that seismic slip of individual aftershocks exceeds locally the inverted afterslip model from geodetic constraints. As the afterslip model implicitly contains the displacements from the aftershocks, this reflects the tendency of afterslip models to smear out the actual slip pattern. However, it also suggests that locally slip for a number of the larger aftershocks exceeds the aseismic slip in spite of the fact that the total equivalent moment of the afterslip exceeds the cumulative moment of aftershocks by a large factor. This effect, seen weakly for the Maule 2010 and also for the Tohoku 2011 earthquake, can be explained by taking into account the uncertainties of the seismicity and afterslip models. In spite of uncertainties, the hypocentral region of the Nias 2005 earthquake is suggested to release a large fraction of moment almost purely seismically. Therefore, these aftershocks are not driven solely by the afterslip but instead their slip areas have probably been stressed by interseismic loading and the mainshock rupture. In a second step, we divide the megathrust of the Maule 2010 rupture into discrete cells and count the number of aftershocks that occur within 50 km of the centre of each cell as a function of time. We then compare this number to a time-dependent afterslip model by defining the ‘afterslip to aftershock ratio’ (ASAR) for each cell as the slope of the best fitting line when the afterslip at time t is plotted against aftershock count. Although we find a linear relation between afterslip and aftershocks for most cells, there is significant variability in ASAR in both the downdip and along-strike directions of the megathrust. We compare the spatial distribution of ASAR with the spatial distribution of seismic coupling, coseismic slip and Bouguer gravity anomaly, and in each case we find no significant correlation.

Description: Particle sinking is a major form of transport for photosynthetically fixed carbon to below the euphotic zone via the biological carbon pump (BCP). Oxygen (O2) depletion may improve the efficiency of the BCP. However, the mechanisms by which O2 deficiency can enhance particulate organic matter (POM) vertical fluxes are not well understood. Here, we investigate the composition and vertical fluxes of POM in two deep basins of the Baltic Sea (GB: Gotland Basin and LD: Landsort Deep). The two basins showed different O2 regimes resulting from the intrusion of oxygen-rich water from the North Sea that ventilated the water column below 140 m in GB, but not in LD, during the time of sampling. In June 2015, we deployed surface-tethered drifting sediment traps in oxic surface waters (GB: 40 and 60 m; LD: 40 and 55 m), within the oxygen minimum zone (OMZ; GB: 110 m and LD: 110 and 180 m) and at recently oxygenated waters by the North Sea inflow in GB (180 m). The primary objective of this study was to test the hypothesis that the different O2 conditions in the water column of GB and LD affected the composition and vertical flux of sinking particles and caused differences in export efficiency between those two basins. The composition and vertical flux of sinking particles were different in GB and LD. In GB, particulate organic carbon (POC) flux was 18 % lower in the shallowest trap (40 m) than in the deepest sediment trap (at 180 m). Particulate nitrogen (PN) and Coomassie stainable particle (CSP) fluxes decreased with depth, while particulate organic phosphorus (POP), biogenic silicate (BSi), chlorophyll a (Chl a) and transparent exopolymeric particle (TEP) fluxes peaked within the core of the OMZ (110 m); this coincided with the presence of manganese oxide-like (MnOx-like) particles aggregated with organic matter. In LD, vertical fluxes of POC, PN and CSPs decreased by 28 %, 42 % and 56 %, respectively, from the surface to deep waters. POP, BSi and TEP fluxes did not decrease continuously with depth, but they were higher at 110 m. Although we observe a higher vertical flux of POP, BSi and TEPs coinciding with abundant MnOx-like particles at 110 m in both basins, the peak in the vertical flux of POM and MnOx-like particles was much higher in GB than in LD. Sinking particles were remarkably enriched in BSi, indicating that diatoms were preferentially included in sinking aggregates and/or there was an inclusion of lithogenic Si (scavenged into sinking particles) in our analysis. During this study, the POC transfer efficiency (POC flux at 180 m over 40 m) was higher in GB (115 %) than in LD (69 %), suggesting that under anoxic conditions a smaller portion of the POC exported below the euphotic zone was transferred to 180 m than under reoxygenated conditions present in GB. In addition, the vertical fluxes of MnOx-like particles were 2 orders of magnitude higher in GB than LD. Our results suggest that POM aggregates with MnOx-like particles formed after the inflow of oxygen-rich water into GB, and the formation of those MnOx–OM-rich particles may alter the composition and vertical flux of POM, potentially contributing to a higher transfer efficiency of POC in GB. This idea is consistent with observations of fresher and less degraded organic matter in deep waters of GB than LD.

Description: This work presents a connection between the density variation within the mesosphere and lower thermosphere (MLT) and changes in the intensity of solar radiation. On a seasonal timescale, these changes take place due to the revolution of the Earth around the Sun. While the Earth, during the northern-hemispheric (NH) winter, is closer to the Sun, the upper mesosphere expands due to an increased radiation intensity, which results in changes in density at these heights. These density variations, i.e., a vertical redistribution of atmospheric mass, have an effect on the rotation rate of Earth's upper atmosphere owing to angular momentum conservation. In order to test this effect, we applied a theoretical model, which shows a decrease in the atmospheric rotation speed of about ∼4 m s−1 at a latitude of 45∘ in the case of a density change of 1 % between 70 and 100 km. To support this statement, we compare the wind variability obtained from meteor radar (MR) and Microwave Limb Sounder (MLS) satellite observations with fluctuations in the length of a day (LOD). Changes in the LOD on timescales of a year and less are primarily driven by tropospheric large-scale geophysical processes and their impact on the Earth's rotation. A global increase in lower-atmospheric eastward-directed winds leads, due to friction with the Earth's surface, to an acceleration of the Earth's rotation by up to a few milliseconds per rotation. The LOD shows an increase during northern winter and decreases during summer, which corresponds to changes in the MLT density due to the Earth–Sun movement. Within the MLT the mean zonal wind shows similar fluctuations to the LOD on annual scales as well as longer time series, which are connected to the seasonal wind regime as well as to density changes excited by variations in the solar radiation. A direct correlation between the local measured winds and the LOD on shorter timescales cannot clearly be identified, due to stronger influences of other natural oscillations on the wind. Further, we show that, even after removing the seasonal and 11-year solar cycle variations, the mean zonal wind and the LOD are connected by analyzing long-term tendencies for the years 2005–2016.

Description: The magnitude of nutrient and trace metal cycling in oxygen minimum zones (OMZ) and the involved loss of fixed nitrogen is crucial for the ocean’s nutrient budget, particularly in light of the ongoing expansion of OMZs. The major focus of the measurement program that was carried out in the frame of the DFG Collaborative Research Centre (SFB) 754 „Climate-biogeochemical interactions in the tropical ocean“, was to advance interdisciplinary understanding of benthic and pelagic nutrient and trace metal cycling processes in the OMZ off Peru and to quantify loss of nitrogen nutrients. Further objectives were to determine ventilation rates by submesoscale processes, quantify export fluxes of particulate organic matter, determine production and decay rates of dissolved organic material, and investigate mechanisms of iron stabilization, removal and cycling. The physical-biogeochemical measurement program focused on a transect perpendicular to the coastline at 12°S. Additionally, a transect at 14°S was completed and a submesoscale process study in an upwelling filament structure was carried out in the region of 15°S, 77°W. The coordinated sampling scheme included CTD profiling and water sampling stations, shipboard turbulence and velocity observations, a glider swarm experiment, moored velocity and hydrography observations, in situ benthic flux measurements using landers, sediment retrieval with a multiple corer, drifting sediment trap deployments and recovery and in situ pump deployments. The measurement program that was closely linked to the follow-up cruise M137 was successfully completed and all data sets were acquired as planned

Description: Dates of the cruise: 04.06.2014 to 19.06.2014

Description: Dates of the cruise: 17.08.2015 to 04.09.2015 - Particulars of the research vessel: Name: RV POSEIDON - Nationality: Germany - Operating Authority: Helmholtz Centre for Ocean Research in Kiel GEOMAR - Geographical area in which ship has operated: Baltic Sea Purpose of the cruise 1) BLUEPRINT: The project aims at establishing indicators for the environmental status of the Baltic Sea, based on the biodiversity and genetic functional profiles of microbes in seawater samples. During the cruise POS488 seawater samples for microbial community, DNA and RNA analyses will be taken with CTD from (mainly coastal) stations. In combination with the regular CTD sampling, in situ fixed water samples will be taken using the Automatic Fixation - Injection Sampler (AFIS) to generate functional microbial fingerprints from anthropogenically impacted regions. Additional to the regular sampling campaign, incubation experiments will be carried out at different stations (cities, estuaries, pristine and agricultural areas) to analyze the reaction of microorganisms to stress as an indicator for organic pollutants. 2) MIKROMIK: The coastal zones of the Baltic Sea are strongly influenced by anthropogenic activities, which suggests, among other impacts, an inflow of microplastics via rivers, harbors and sewage treatment plants. Distinct data on the abundance, distribution and polymer composition are missing for the Baltic Sea. Further, it is yet unclear whether microplastics serve as vector for microorganisms, including pathogenic bacteria. Therefore, we will sample surface water (Manta net) and sediment (Van Veen and box grab). Back in the laboratory, we will analyze the samples regarding abundance, composition and spatial distribution of microplastic. 3) Seawater and sediment samples will be taken from all stations to generate a broad selection of metadata (pollutants, nutrients etc) for our own datasets and for other colleagues at the IOW.

Description: Halogenated very short-lived substances (VSLSs) are naturally produced in the ocean and emitted to the atmosphere. When transported to the stratosphere, these compounds can have a significant influence on the ozone layer and climate. During a research cruise on RV Sonne in the subtropical and tropical west Indian Ocean in July and August 2014, we measured the VSLSs, methyl iodide (CH3I) and for the first time bromoform (CHBr3) and dibromomethane (CH2Br2), in surface seawater and the marine atmosphere to derive their emission strengths. Using the Lagrangian particle dispersion model FLEXPART with ERA-Interim meteorological fields, we calculated the direct contribution of observed VSLS emissions to the stratospheric halogen burden during the Asian summer monsoon. Furthermore, we compare the in situ calculations with the interannual variability of transport from a larger area of the west Indian Ocean surface to the stratosphere for July 2000–2015. We found that the west Indian Ocean is a strong source for CHBr3 (910 pmol m−2 h−1), very strong source for CH2Br2 (930 pmol m−2 h−1), and an average source for CH3I (460 pmol m−2 h−1). The atmospheric transport from the tropical west Indian Ocean surface to the stratosphere experiences two main pathways. On very short timescales, especially relevant for the shortest-lived compound CH3I (3.5 days lifetime), convection above the Indian Ocean lifts oceanic air masses and VSLSs towards the tropopause. On a longer timescale, the Asian summer monsoon circulation transports oceanic VSLSs towards India and the Bay of Bengal, where they are lifted with the monsoon convection and reach stratospheric levels in the southeastern part of the Asian monsoon anticyclone. This transport pathway is more important for the longer-lived brominated compounds (17 and 150 days lifetime for CHBr3 and CH2Br2). The entrainment of CHBr3 and CH3I from the west Indian Ocean to the stratosphere during the Asian summer monsoon is lower than from previous cruises in the tropical west Pacific Ocean during boreal autumn and early winter but higher than from the tropical Atlantic during boreal summer. In contrast, the projected CH2Br2 entrainment was very high because of the high emissions during the west Indian Ocean cruise. The 16-year July time series shows highest interannual variability for the shortest-lived CH3I and lowest for the longest-lived CH2Br2. During this time period, a small increase in VSLS entrainment from the west Indian Ocean through the Asian monsoon to the stratosphere is found. Overall, this study confirms that the subtropical and tropical west Indian Ocean is an important source region of halogenated VSLSs, especially CH2Br2, to the troposphere and stratosphere during the Asian summer monsoon.

Description: We show that inflows of oxygenated waters into sulfidic layers have a strong impact on biogeochemical transformation at oxic/anoxic transition zones. Taking the pelagic methane dynamics in the Gotland Basin as an example, we performed our studies when one of the largest inflows ever recorded entered the Baltic Sea in March 2015. An inflowing gravity current transported oxic waters into the sulfidic deep layers and freshly generated a near-bottom secondary redox interface. At the upper slope, where the inflowing water masses were vigorously turbulent and the main and secondary redox interfaces in close contact to each other, methane oxidation rates inside the transition zone were found to be higher compared to the weakly turbulent basin interior. At the main redox interface in the basin center, lateral intrusions of oxygenated waters into intermediate water depth may have stimulated the growth of the methanotrophic community and their activity.

Description: An vier Tidenzyklus-Stationen von 21 bis 36 Std. Dauer wurde auf einem Längsschnitt von Hamburg bis zur Außenelbe untersucht, welchen Anteil die Bakterien am Abbau der organischen Substanz haben. Der Gesamt-Abbau durch die planktische Organismengemeinschaft wurde aus dem Sauerstoffverbrauch mit einem angenommenen Respirationsquotienten von 0,85 bestimmt. Der bakterielle Abbau wurde über die Biomasse-Produktion und die Wachstums-Effizienz der Bakterien ermittelt. Die Tidenzyklus-Stationen mit einer hohen zeitlichen Auflösung zeigten eine große Variabilität der Abbauprozesse während der Gezeiten. Die Mittelwerte ergaben, dass der Gesamt-Abbau im oberen noch limnischen Bereich 10,2 μg C l-1 h-1 betrug mit einem bakteriellen Anteil von 82%. Flussabwärts ging der Gesamt-Abbau auf 2,7 μg C l-1 h-1 zurück und der bakterielle Anteil belief sich auf rd. 50 %. Der Längsschnitt von Hamburg bis Neuwerk mit einer hohen räumlichen Auflösung zeigte eine grundsätzlich ähnliche regionale Verteilung. Der hohe Anteil des bakteriellen Abbaus in dem oberen limnischen Ästuarbereich geht darauf zurück, dass das hier aus dem Mittellauf der Elbe eingeschwemmte Phytoplankton infolge Lichtmangels größtenteils abstirbt. Die Ursachen liegen in der großen Wassertiefe des Hamburger Hafengebietes und der starken Gezeitendurchmischung der Wassersäule. Dadurch vermindert sich die Respiration des Phytoplanktons und die Abbautätigkeit ist daher im Wesentlichen auf die Bakterien und das Zooplankton beschränkt. Von diesen beiden verbleibenden Hauptkomponenten des Flussplanktons spielen die Bakterien die wichtigere Rolle beim Abbau der organischen Substanz im Elbe-Ästuar.

Description: Microsatellite loci are popular molecular markers due to their resolution in distinguishing individual genotypes. However, they have rarely been used to explore the population dynamics in species with biphasic life cycles in which both haploid and diploid stages develop into independent, functional organisms. We developed microsatellite loci for the haploid–diploid red seaweed Gracilaria vermiculophylla, a widespread non-native species in coastal estuaries of the Northern hemisphere. Forty-two loci were screened for amplification and polymorphism. Nine of these loci were polymorphic across four populations of the extant range with two to eleven alleles observed. Mean observed and expected heterozygosities ranged from 0.265 to 0.527 and 0.317 to 0.387, respectively. Overall, these markers will aid in the study of the invasive history of this seaweed and further studies on the population dynamics of this important haploid–diploid primary producer.

Description: The eastern tropical South Pacific (ETSP) hosts the Peruvian upwelling system, which represents one of the most productive areas in the world ocean. High primary production followed by rapid heterotrophic utilization of organic matter supports the formation of one of the most intense oxygen minimum zones (OMZs) in the world ocean, where dissolved oxygen (O2) concentrations reach less than 1 µmol kg−1. The high productivity leads to an accumulation of dissolved organic matter (DOM) in the surface layers that may serve as a substrate for heterotrophic respiration. However, the importance of DOM utilization for O2 respiration in the Peruvian upwelling system in general and for shaping the upper oxycline in particular remains unclear so far. This study reports the first estimates of diapycnal fluxes and supply of O2, dissolved organic carbon (DOC), dissolved organic nitrogen, dissolved hydrolysable amino acids (DHAA) and dissolved combined carbohydrates (DCCHO) for the ETSP off Peru. Diapycnal flux and supply estimates were obtained by combining measured vertical diffusivities and solute concentration gradients. They were analysed together with the molecular composition of DCCHO and DHAA to infer the transport of labile DOM into the upper OMZ and the potential role of DOM utilization for the attenuation of the diapycnal O2 flux that ventilates the OMZ. The observed diapycnal O2 flux (50 mmol O2 m−2 d−1 at maximum) was limited to the upper 80 m of the water column; the O2 supply of ∼1 µmol kg−1 d−1 was comparable to previously published O2 consumption rates for the North and South Pacific OMZs. The diapycnal DOM flux (31 mmol C m−2 d−1 at maximum) was limited to ∼30 m water depth, suggesting that the labile DOM is extensively consumed within the upper part of the shallow oxycline off Peru. The analyses of DCCHO and DHAA composition support this finding, suggesting that DOM undergoes comprehensive remineralization within the upper part of the oxycline, as the DOM within the core of the OMZ was found to be largely altered. Estimated by a simple equation for carbon combustion, aerobic respiration of DCCHO and DHAA, supplied by diapycnal mixing (0.46 µmol kg−1 d−1 at maximum), could account for up to 38 % of the diapycnal O2 supply in the upper oxycline, which suggests that DOM utilization plays a significant role for shaping the upper oxycline in the ETSP.

Description: NOAA 20th century and ERA-20C reanalysis datasets are evaluated regarding the representation of extra-tropical cyclones and windstorms over the Northern and Southern Hemisphere during the respective 6-month winter seasons. The results indicate substantial differences in low-frequency variability between the two datasets – especially in the first half of the 20th century – expressed in different signs and/or magnitudes of long-term trends. This is hampering a reliable analysis of real long-term trends of cyclone and windstorm activity. However, higher-frequency variability is in good agreement between both datasets especially for the Northern Hemisphere.

Description: Sea surface and atmospheric measurements of dimethylsulphide (DMS) were performed during the TransBrom cruise in the western Pacific Ocean between Japan and Australia in October 2009. Air–sea DMS fluxes were computed between 0 and 30 μmol m−2 d−1, which are in agreement with those computed by the current climatology, and peak emissions of marine DMS into the atmosphere were found during the occurrence of tropical storm systems. Atmospheric variability in DMS, however, did not follow that of the computed fluxes and was more related to atmospheric transport processes. The computed emissions were used as input fields for the Lagrangian dispersion model FLEXPART, which was set up with actual meteorological fields from ERA-Interim data and different chemical lifetimes of DMS. A comparison with aircraft in situ data from the adjacent HIPPO2 campaign revealed an overall good agreement between modelled versus observed DMS profiles over the tropical western Pacific Ocean. Based on observed DMS emissions and meteorological fields along the cruise track, the model projected that up to 30 g S per month in the form of DMS, emitted from an area of 6 × 104 m2, can be transported above 17 km. This surprisingly large DMS entrainment into the stratosphere is disproportionate to the regional extent of the area of emissions and mainly due to the high convective activity in this region as simulated by the transport model. Thus, if DMS can cross the tropical tropopause layer (TTL), we suggest that the considerably larger area of the tropical western Pacific Ocean can be a source of sulphur to the stratosphere, which has not been considered as yet.

Description: The climate active trace-gas carbonyl sulfide (OCS) is the most abundant sulfur gas in the atmosphere. A missing source in its atmospheric budget is currently suggested, resulting from an upward revision of the vegetation sink. Tropical oceanic emissions have been proposed to close the resulting gap in the atmospheric budget. We present a bottom-up approach including (i) new observations of OCS in surface waters of the tropical Atlantic, Pacific and Indian oceans and (ii) a further improved global box model to show that direct OCS emissions are unlikely to account for the missing source. The box model suggests an undersaturation of the surface water with respect to OCS integrated over the entire tropical ocean area and, further, global annual direct emissions of OCS well below that suggested by top-down estimates. In addition, we discuss the potential of indirect emission from CS2 and dimethylsulfide (DMS) to account for the gap in the atmospheric budget. This bottom-up estimate of oceanic emissions has implications for using OCS as a proxy for global terrestrial CO2 uptake, which is currently impeded by the inadequate quantification of atmospheric OCS sources and sinks.

Description: Genetic divergence among populations arises through natural selection or drift and is counteracted by connectivity and gene flow. In sympatric populations, isolating mechanisms are thus needed to limit the homogenizing effects of gene flow to allow for adaptation and speciation. Chromosomal inversions act as an important mechanism maintaining isolating barriers, yet their role in sympatric populations and divergence with gene flow is not entirely understood. Here, we revisit the question of whether inversions play a role in the divergence of connected populations of the marine fish Atlantic cod (Gadus morhua), by exploring a unique data set combining whole-genome sequencing data and behavioural data obtained with acoustic telemetry. Within a confined fjord environment, we find three genetically differentiated Atlantic cod types belonging to the oceanic North Sea population, the western Baltic population and a local fjord-type cod. Continuous behavioural tracking over 4 year revealed temporally stable sympatry of these types within the fjord. Despite overall weak genetic differentiation consistent with high levels of gene flow, we detected significant frequency shifts of three previously identified inversions, indicating an adaptive barrier to gene flow. In addition, behavioural data indicated that North Sea cod and individuals homozygous for the LG12 inversion had lower fitness in the fjord environment. However, North Sea and fjord-type cod also occupy different depths, possibly contributing to prezygotic reproductive isolation and representing a behavioural barrier to gene flow. Our results provide the first insights into a complex interplay of genomic and behavioural isolating barriers in Atlantic cod and establish a new model system towards an understanding of the role of genomic structural variants in adaptation and diversification.

Description: Extratropical volcanic eruptions are commonly thought to be less effective at driving large-scale surface cooling than tropical eruptions. However, recent minor extratropical eruptions have produced a measurable climate impact, and proxy records suggest that the most extreme Northern Hemisphere cold period of the Common Era was initiated by an extratropical eruption in 536 CE. Using ice-core-derived volcanic stratospheric sulfur injections and Northern Hemisphere summer temperature reconstructions from tree rings, we show here that in proportion to their estimated stratospheric sulfur injection, extratropical explosive eruptions since 750 CE have produced stronger hemispheric cooling than tropical eruptions. Stratospheric aerosol simulations demonstrate that for eruptions with a sulfur injection magnitude and height equal to that of the 1991 Mount Pinatubo eruption, extratropical eruptions produce time-integrated radiative forcing anomalies over the Northern Hemisphere extratropics up to 80% greater than tropical eruptions, as decreases in aerosol lifetime are overwhelmed by the enhanced radiative impact associated with the relative confinement of aerosol to a single hemisphere. The model results are consistent with the temperature reconstructions, and elucidate how the radiative forcing produced by extratropical eruptions is strongly dependent on the eruption season and sulfur injection height within the stratosphere.

Description: At the Uruguayan continental margin, seismic evidence for the occurrence of gas hydrate has been identified based on the presence of BSRs in densely spaced 2D reflection seismic sections from different surveys. Mapping of BSRs based on 2D seismic data acquired in 2007 and 2008 suggested the presence of gas hydrates in areas that were not previously identified; hence hydrate occurrence offshore Uruguay is more widespread than previously thought. Recently ANCAP has digitized offshore seismic data acquired between 1970 and 1982. Being able to work on this data using interpretation software, and integrating results with the latest interpretations performed on the seismic collected in 2007 and 2008, the BSR extends over an area of approximately 25.000 km2. It is present in water depths greater than 500 m and has high continuity in Pelotas Basin but is more discontinuous at Punta del Este Basin and southern part of Oriental del Plata Basin. In offshore basins around the world the base of GHSZ can have different seismic expressions such as continuous, segmented, and high-relief BSRs depending on the stratigraphic, fluid and geothermal setting. Here, we present examples of the influence of the acquisition parameters on the acoustic expression of the BSR, comparing commercial seismic sections acquired for hydrocarbon exploration and high resolution seismic sections acquired during the R/V Meteor Cruise M49/2 in 2001 and R/V Meteor Cruise M78/3a (May - June 2009) using different sources and streamer system. For the different data sets the BSR presents differences regarding its continuity and amplitude strength. In high resolution seismic, enhanced amplitudes and phase reversals are observed for several reflectors while deep penetration seismic shows only one single continuous reflector. This comparison may help to visualize the complexity of the free gas, gas hydrate and stratigraphic system behind the BSR, which is usually masked on low-frequency deep penetration seismic data.

Description: Methyl iodide (CH3I}, bromoform (CHBr3) and dibromomethane (CH2Br2), which are produced naturally in the oceans, take part in ozone chemistry both in the troposphere and the stratosphere. The significance of oceanic upwelling regions for emissions of these trace gases in the global context is still uncertain although they have been identified as important source regions. To better quantify the role of upwelling areas in current and future climate, this paper analyzes major factors that influenced halocarbon emissions from the tropical North East Atlantic including the Mauritanian upwelling during the DRIVE expedition. Diel and regional variability of oceanic and atmospheric CH3I, CHBr3 and CH2Br2 was determined along with biological and meteorological parameters at six 24 h-stations. Low oceanic concentrations of CH3I from 0.1–5.4 pmol L-1 were equally distributed throughout the investigation area. CHBr3 of 1.0–42.4 pmol L-1 and CH2Br2 of 1.0–9.4 pmol L-1 were measured with maximum concentrations close to the Mauritanian coast. Atmospheric mixing rations of CH3I of up to 3.3, CHBr3 to 8.9 and CH2Br2 to 3.1 ppt above the upwelling and 1.8, 12.8, respectively 2.2 ppt at a Cape Verdean coast were detected during the campaign. While diel variability in CH3I emissions could be mainly ascribed to oceanic non-biological production, no main driver was identified for its emissions in the entire study region. In contrast, oceanic bromocarbons resulted from biogenic sources which were identified as regional drivers of their sea-to-air fluxes. The diel impact of wind speed on bromocarbon emissions increased with decreasing distance to the coast. The height of the marine atmospheric boundary layer (MABL) was determined as an additional factor influencing halocarbon emissions. Oceanic and atmospheric halocarbons correlated well in the study region and in combination with high oceanic CH3I, CHBr3 and CH2Br2 concentrations, local hot spots of atmospheric halocarbons could solely be explained by marine sources. This conclusion is in contrast with previous studies that hypothesized the occurrence of elevated atmospheric halocarbons over the eastern tropical Atlantic mainly originating from the West-African continent.

Description: The overall aim of my thesis was to improve our understanding of environmental drivers causing the dynamics of the Eastern Baltic cod reproduction habitat and to assess their relevance for a possible application in the sustainable stock management. A novel approach to map the reproductive habitat of Eastern Baltic cod, the Buoyancy Depending Reproductive Layers (BDRL), was developed and used to propose an alternative stock indicator, the effective Spawning Stock Biomass (eSSB). The eSSB was found to improve the fit of a recruitment model compared to the model using the conventional Spawning Stock Biomass. Oxygen depletion was also negatively impacting the available size of nursery areas for juveniles. The mechanism was able to partly explain the observed decline of the condition of juveniles in the nursery areas, because a high population density in the remaining habitat could increase the impact of density depending effects. Furthermore, by the application of the novel approach of BDRLs the spawning habitat was shown to be sensitive to eutrophication and that this sensitivity is strongly depending on the size of the female spawner using the habitat. As predicted, the BDRL approach was superior to the “classic” approach, the Reproductive Volume (RV) because it was more sensitive to environmental change, able to incorporate stock structure, was not overestimating the spawning habitat in the eastern spawning areas and could provide estimates of other stressors depending on the female spawner size. Due to a permanently installed measurement platform in the Arkona Basin, the new methodology could be used to establish a new environmental indicator on the spawning habitat conditions. It was recommended to be used in future stock assessments.

Description: Stratospheric sulfate aerosols from volcanic eruptions have a significant impact on the Earth's climate. To include the effects of volcanic eruptions in climate model simulations, the Easy Volcanic Aerosol (EVA) forcing generator provides stratospheric aerosol optical properties as a function of time, latitude, height, and wavelength for a given input list of volcanic eruption attributes. EVA is based on a parameterized three-box model of stratospheric transport and simple scaling relationships used to derive mid-visible (550 nm) aerosol optical depth and aerosol effective radius from stratospheric sulfate mass. Precalculated look-up tables computed from Mie theory are used to produce wavelength-dependent aerosol extinction, single scattering albedo, and scattering asymmetry factor values. The structural form of EVA and the tuning of its parameters are chosen to produce best agreement with the satellite-based reconstruction of stratospheric aerosol properties following the 1991 Pinatubo eruption, and with prior millennial-timescale forcing reconstructions, including the 1815 eruption of Tambora. EVA can be used to produce volcanic forcing for climate models which is based on recent observations and physical understanding but internally self-consistent over any timescale of choice. In addition, EVA is constructed so as to allow for easy modification of different aspects of aerosol properties, in order to be used in model experiments to help advance understanding of what aspects of the volcanic aerosol are important for the climate system.

Description: Eddy covariance is a technique to measure air-sea gas exchange directly. A direct flux measurement has the advantage that, without parameterizations or major simplifications of processes. Section 3 focuses on the efflux of these aerosol predecessors together with aerosol numbers in the atmosphere. The oceanic emissions are tracked using the FLEXPART forward trajectory model, which provides the locations and the times for the satellite remote sensing. The averaged satellite aerosol numbers along the 12 h downwind trajectory were correlated with the magnitude of the oceanic sources, which was found to be a significant positive correlation. The results point to a local influence of air-sea fluxes on the aerosol number, which could give rise to local feedbacks. My investigation in Section 4 uses gas transfer velocities derived from DMS and CO2 eddy covariance measurements to describe gas transfer limitations which is caused by a wind-wave interaction. This process is parameterized using the transformed Reynolds number Retr. Below a threshold of |Retr| 〈6.7·105, flow separation develops at the wave’s lee side and causes a decoupling between the flow above the wave and the ocean surface. The gas exchange is then highly likely to be suppressed. In Section 5, the impact of gas transfer limitation on gas transfer parameterizations and global climatologies of DMS and CO2 is calculated. The data sets of two highly cited gas transfer parameterizations are investigated with respect to gas transfer limitation. Based on these algorithms the Nightingale 2000 parameterization is found to be heavily gas transfer limited and its gas transfer velocity will increase on average by 22% if the correction is applied. The Wanninkhoff 2014 parameterization increases by 9.85% after correction. The correction is applied to the global air-sea flux climatologies of DMS and CO2 for the year 2014.

Description: Highlights • Field-scale sub-seabed release experiment to simulate leakage from CO2 reservoir. • CO2 induces pronounced changes in pore water geochemistry. • Dissolution of minerals as a result of increased dissolved CO2 concentrations. • Changes in pore water geochemistry are transient and spatially restricted. • Levels of released metals are low and likely to have minor impact on benthic ecosystems. Abstract The potential for leakage of CO2 from a storage reservoir into the overlying marine sediments and into the water column and the impacts on benthic ecosystems are major challenges associated with carbon capture and storage (CCS) in subseafloor reservoirs. We have conducted a field-scale controlled CO2 release experiment in shallow, unconsolidated marine sediments, and documented the changes to the chemical composition of the sediments, their pore waters and overlying water column before, during and up to 1 year after the 37-day long CO2 release. Increased levels of dissolved inorganic carbon (DIC) were detected in the pore waters close to the sediment-seawater interface in sediments sampled closest to the subsurface injection point within 5 weeks of the start of the CO2 release. Highest DIC concentrations (28.8 mmol L−1, compared to background levels of 2.4 mmol L−1) were observed 6 days after the injection had stopped. The high DIC pore waters have high total alkalinity, and low δ13CDIC values (−20‰, compared to a background value of −2‰), due to the dissolution of the injected CO2 (δ13C = −26.6‰). The high DIC pore waters have enhanced concentrations of metals (including Ca, Fe, Mn) and dissolved silicon, relative to non-DIC enriched pore waters, indicating that dissolution of injected CO2 promotes dissolution of carbonate and silicate minerals. However, in this experiment, the pore water metal concentrations did not exceed levels considered to be harmful to the environment. The spatial extent of the impact of the injected CO2 in the sediments and pore waters was restricted to an area within 25 m of the injection point, and no impact was observed in the overlying water column. Concentrations of all pore water constituents returned to background values within 18 days after the CO2 injection was stopped.

Description: Coastal seas may account for more than 75 % of global oceanic methane emissions. There, methane is mainly produced microbially in anoxic sediments from where it can escape to the overlying water column. Aerobic methane oxidation (MOx) in the water column acts as a biological filter reducing the amount of methane that eventually evades to the atmosphere. The efficiency of the MOx filter is potentially controlled by the availability of dissolved methane and oxygen, as well as temperature, salinity, and hydrographic dynamics, and all of these factors undergo strong temporal fluctuations in coastal ecosystems. In order to elucidate the key environmental controls, specifically the effect of oxygen availability, on MOx in a seasonally stratified and hypoxic coastal marine setting, we conducted a 2-year time-series study with measurements of MOx and physico-chemical water column parameters in a coastal inlet in the southwestern Baltic Sea (Eckernförde Bay). We found that MOx rates always increased toward the seafloor, but were not directly linked to methane concentrations. MOx exhibited a strong seasonal variability, with maximum rates (up to 11.6 nmol l−1 d−1) during summer stratification when oxygen concentrations were lowest and bottom-water temperatures were highest. Under these conditions, 70–95 % of the sediment-released methane was oxidized, whereas only 40–60 % were consumed during the mixed and oxygenated periods. Laboratory experiments with manipulated oxygen concentrations in the range of 0.2–220 µmol l−1 revealed a sub-micromolar oxygen-optimum for MOx at the study site. In contrast, the fraction of methane-carbon incorporation into the bacterial biomass (compared to the total amount of oxidised methane) was up to 38-fold higher at saturated oxygen concentrations, suggesting a different partitioning of catabolic and anabolic processes under oxygen-replete and oxygen-starved conditions, respectively. Our results underscore the importance of MOx in mitigating methane emission from coastal waters and indicate an organism-level adaptation of the water column methanotrophs to hypoxic conditions.

Description: Calcium carbonates (CaCO32-­‐) belong to the most common mineral groups within the marine realm. In this thesis interactions between marine microbes and carbonate stability are investigated in depth. Microbial biofilms are analyzed at high resolution regarding their functions in element and isotopic fractionation. In addition, calcite dissolution experiments were carried out to quantify the effect of aerobic methane oxidizing bacteria. Carbonate precipitation rates in marine sediments often serve as a fitting parameter for numerical modeling approaches to constrain. 45Ca and 14C-bicarbonate incubation experiments were carried out to quantify ongoing calcification in natural sediment slurries. During a research cruise rates of anaerobic methane oxidation and sulfate reduction were determined for the first time using radiotracers. The obtained rates were combined with carbonate isotopic signatures to elucidate local variations of fluid advection.

Description: Large amounts of methane are delivered by fluids through the erosive forearc of the convergent margin offshore Costa Rica and lead to the formation of cold seeps at the sediment surface. Besides mud extrusion, numerous cold seeps are created by landslides induced by seamount subduction or fluid migration along major faults. Most of the dissolved methane reaching the seafloor at cold seeps is oxidized within the benthic microbial methane filter by anaerobic oxidation of methane (AOM). Measurements of AOM and sulfate reduction as well as numerical modeling of porewater profiles revealed a highly active and efficient benthic methane filter at Quepos Slide site; a landslide on the continental slope between the Nicoya and Osa Peninsula. Integrated areal rates of AOM ranged from 12.9 ± 6.0 to 45.2 ± 11.5 mmol m-2 d-1, with only 1 to 2.5% of the upward methane flux being released into the water column. Additionally, two parallel sediment cores from Quepos Slide were used for in vitro experiments in a recently developed Sediment-F low-Through (SLOT) system to simulate an increased fluid and methane flux from the bottom of the sediment core. The benthic methane filter revealed a high adaptability whereby the methane oxidation efficiency responded to the increased fluid flow within 150–170 days. To our knowledge, this study provides the first estimation of the natural biogeochemical response of seep sediments to changes in fluid flow.

Description: Marine sediments all over the world bear methane, generated from organic matter and deposited at the seafloor. By diffusion or ascending fluids the methane is transported to the sediment surface and emitted into the oceans and further into the atmosphere, where it acts as greenhouse gas. However, most of the methane is anaerobically or aerobically oxidized by microbes in the upper sediments and in the water column. One of the most important methane oxidizing processes is the anaerobic oxidation of methane (AOM) in the microbial benthic methane filter. Consortia of anaerobic methanotroph (ANME) archeae and sulfate reducing bacteria (SRB) consume the methane with sulfate as final electron acceptor. While the methane is delivered from deeper reservoirs, sulfate originates from the seawater and has to diffuse into the sediment. AOM occurs mainly in the intersection of sulfate and methane, the sulfate methane transition zone (SMTZ). At continental margins gas hydrate bearing sediments form huge reservoirs of methane. Methane can be transported by upward migrating fluids from dewatered and dehydrated sediments. At the sediment surface, advecting fluids form so called “cold seeps”. The microbial benthic methane filter of cold seeps is well established and adapted to the flow conditions. However, increasing fluid flux can challenge the microbial benthic filter by higher methane flux and lower sulfate penetration depth, by resulted higher methane emissions. The aim of this thesis is to study efficiency and adaptability of the benthic methane filter under non-steady state conditions. For this purpose I developed a sediment flow-through (SLOT) system to mimic the fluid regime of the benthic methane filter and to monitor long-term incubations of undisturbed sediment cores from cold seeps under varying fluid fluxes. All experiments were performed under anoxic conditions and with two parallel sediments cores under varying fluid flow conditions. The presented thesis combines field data and experimental data from sediments of different cold seep sites and their microbial benthic methane filter. First experiments with coastal gassy sediments from Eckernförde Bay constrain the possibility of SLOT to simulate fluid flow regimes of microbial benthic filters under fluid flux differences of one magnitude. Additionally, other seep related processes such as sulfide oxidation and precipitation were observed and prove the usefulness of the SLOT system for biogeochemical studies. Two neighboring mounds with different steady state conditions were studied offshore Costa Rica. These mounds differ in fluid source, fluid flux as well as methane flux. Both mounds exhibit a well established microbial benthic filter which is adapted to their respective flow conditions. Fluid and methane source are reflected in the isotopic signature of authigenic carbonates, which are the archive of cold seep systems. Field and experimental data from the Quepos Slide offshore Costa Rica were combined to study the benthic methane filter. In the experiments the microbial benthic methane filter was highly efficient and shows a good adaption within 150-170 d response time with low methane efflux within the transition. A fluid pulse with higher methane emissions reveals how fast the methane efflux can change when fluid flux is increased. Furthermore, three different cold seep habitats from a recently discovered cold seep area at the continental margin of Chile were studied. Experiments with a bacterial mat habitat from a young seep site show a uniform fluid flow through the sediment and reveal a high adaptability of the benthic methane filter. In a clam field with high sulfide production an enormous methane efflux occured before the benthic filter was adapted to the new fluid regime. In sediments with an aerobic benthic methane filter from a tubeworm habitat, fluids were channeled by biogenic tubes. The benthic methane filter changed during the 150 d of anoxic incubation from an aerobic to an anaerobic methane sink. In the present thesis it is demonstrated for the first time how enthic methane filters adapt to increased fluid flux. The studies reveal that beside preconditions and the intensity of the variation the sediment matrix flow conditions through the sediment is prime important for the adaptability of the benthic methane filter.

Description: Highlights: • Egg specific gravity vary between areas/subpopulations as an adaptation to salinity. • Egg diameter differ between areas/subpopulations whereas egg dry weight does not. • Habitat suitability for egg survival vary depending on salinity and oxygen conditions. • Egg survival probabilities increased following a major saline water inflow event. Abstract: Vertical distribution of eggs as determined by the egg buoyancy, i.e. the difference in specific gravity between the egg and the ambient water, have profound implications for the reproductive success and hence recruitment in fish. Here variability in egg specific gravity of flounder, Platichthys flesus, was studied along a salinity gradient and by comparing two reproductive strategies, spawning pelagic or demersal eggs. Egg characteristics of 209 egg batches (covering ICES subdivisions (SD) 22–29 in the brackish water Baltic Sea) was used to reveal the significance of egg diameter and egg dry weight for egg specific gravity (ESG), subpopulations, and egg survival probabilities of pelagic eggs following a major saline water inflow event. As an adaptation to salinity, ESG (at 7 °C) differed (p 〈 0.001) between areas; three subpopulations of flounder with pelagic eggs: 1.0152 ± 0.0021 (mean ± sd) g cm−3 in SD 22, 1.0116 ± 0.0013 g cm−3 in SD 24 and 25, and 1.0096 ± 0.0007 g cm−3 in SD 26 and 28, contrasting to flounder with demersal eggs, 1.0161 ± 0.0008 g cm−3. Egg diameter differed (p 〈 0.001) between subpopulations; from 1.08 ± 0.06 mm (SD 22) to 1.26 ± 0.06 mm (SD 26 and 28) for pelagic eggs and 1.02 ± 0.04 mm for demersal eggs, whereas egg dry weight was similar; 37.9 ± 5.0 μg (SD 22) and 37.2 ± 3.9 μg (SD 28) for pelagic, and 36.5 ± 6.5 μg for demersal eggs. Both egg diameter and egg dry weight were identified as explanatory variables, explaining 87% of the variation in ESG. ESG changed during ontogeny; a slight decrease initially but an increase prior to hatching. Egg survival probabilities judged by combining ESG and hydrographic data suggested higher egg survival in SD 25 (26 vs 100%) and SD 26 (32 vs 99%) but not in SD 28 (0 and 3%) after the inflow event, i.e. highly fluctuating habitat suitability. The results confirm the significance of ESG for egg survival and show that variability in ESG as and adaptation to salinity is determined mainly by water content manifested as differences in egg diameter; increase in diameter with decreasing salinity for pelagic eggs, and decreased diameter resulting in demersal eggs.