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  • Articles  (2,035)
  • American Chemical Society  (1,750)
  • Frontiers Media  (285)
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  • 2020-2024  (2,035)
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  • Articles  (2,035)
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  • 1
    Publication Date: 2023-02-28
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lillis, A., & Mooney, T. Sounds of a changing sea: temperature drives acoustic output by dominant biological sound-producers in shallow water habitats. Frontiers in Marine Science, 9, (2022): 960881, https://doi.org/10.3389/fmars.2022.960881.
    Description: The ocean’s soundscape is fundamental to marine ecosystems, not only as a source of sensory information critical to many ecological processes but also as an indicator of biodiversity and habitat health. Yet, little is known about how ecoacoustic activity in marine habitats is altered by environmental changes such as temperature. The sounds produced by dense colonies of snapping shrimp dominate temperate and tropical coastal soundscapes worldwide and are a major driver broadband sound pressure level (SPL) patterns. Field recordings of soundscape patterns from the range limit of a snapping shrimp distribution showed that rates of snap production and associated SPL were closely positively correlated to water temperature. Snap rates changed by 15-60% per °C change in regional temperature, accompanied by fluctuations in SPL between 1-2 dB per °C. To test if this relationship was due to a direct effect of temperature, we measured snap rates in controlled experiments using two snapping shrimp species dominant in the Western Atlantic Ocean and Gulf of Mexico (Alpheus heterochaelis and A. angulosus). Snap rates were measured for shrimp held at different temperatures (across 10-30 °C range, with upper limit 2°C above current summer mean temperatures) and under different social groupings. Temperature had a significant effect on shrimp snap rates for all social contexts tested (individuals, pairs, and groups). For individuals and shrimp groups, snap production more than doubled between mid-range (20°C) and high (30°C) temperature treatments. Given that snapping shrimp sounds dominate the soundscapes of diverse habitats, including coral reefs, rocky bottoms, seagrass, and oyster beds, the strong influence of temperature on their activity will potentially alter soundscape patterns broadly. Increases in ambient sound levels driven by elevated water temperatures has ecological implications for signal detection, communication, and navigation in key coastal ecosystems for a wide range of organisms, including humans.
    Description: Financial support was provided by NSF Biological Oceanography Grant #1536782, Woods Hole Oceanographic Institution’s Interdisciplinary Award and Postdoctoral Scholar Programs.
    Keywords: Soundscape ; Underwater noise ; Acoustic ecology ; Acoustic monitoring ; Crustacean ; Ecoacoustics
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2023-01-16
    Description: The uptake ability toward arsenic(V), chromium(VI), and boron(III) ions of ad hoc functionalized magnetic nanostructured devices has been investigated. To this purpose, ligands based on meglumine have been synthesized and used to coat magnetite nanoparticles (Fe3O4) obtained by the co-precipitation methodology. The as-prepared hybrid material was characterized by infrared spectroscopy (IR), X-ray diffraction, thermogravimetric analysis, and scanning electron microscopy combined with energy-dispersive X-ray analysis. Moreover, its magnetic hysteresis properties were measured to evaluate its magnetic properties, and the adsorption kinetics and isothermal models were applied to discern between the different adsorption phenomena. Specifically, the better fitting was observed by the Langmuir isotherm model for all metal ions tested, highlighting a higher uptake in arsenic (28.2 mg/g), chromium (12.3 mg/g), and boron (23.7 mg/g) sorption values if compared with other magnetic nanostructured materials. After adsorption, an external magnetic stimulus can be used to efficiently remove nanomaterials from the water. Finally the nanomaterial can be reused up to five cycles and regenerated for another three cycles.
    Description: Published
    Description: 10775–10788
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 3
    Publication Date: 2023-03-08
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Visser, A.-N., Wankel, S., Frey, C., Kappler, A., & Lehmann, M. Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation. Frontiers in Microbiology, 13, (2022): 927475, https://doi.org/10.3389/fmicb.2022.927475.
    Description: Natural-abundance measurements of nitrate and nitrite (NOx) isotope ratios (δ15N and δ18O) can be a valuable tool to study the biogeochemical fate of NOx species in the environment. A prerequisite for using NOx isotopes in this regard is an understanding of the mechanistic details of isotope fractionation (15ε, 18ε) associated with the biotic and abiotic NOx transformation processes involved (e.g., denitrification). However, possible impacts on isotope fractionation resulting from changing growth conditions during denitrification, different carbon substrates, or simply the presence of compounds that may be involved in NOx reduction as co-substrates [e.g., Fe(II)] remain uncertain. Here we investigated whether the type of organic substrate, i.e., short-chained organic acids, and the presence/absence of Fe(II) (mixotrophic vs. heterotrophic growth conditions) affect N and O isotope fractionation dynamics during nitrate (NO3–) and nitrite (NO2–) reduction in laboratory experiments with three strains of putative nitrate-dependent Fe(II)-oxidizing bacteria and one canonical denitrifier. Our results revealed that 15ε and 18ε values obtained for heterotrophic (15ε-NO3–: 17.6 ± 2.8‰, 18ε-NO3–:18.1 ± 2.5‰; 15ε-NO2–: 14.4 ± 3.2‰) vs. mixotrophic (15ε-NO3–: 20.2 ± 1.4‰, 18ε-NO3–: 19.5 ± 1.5‰; 15ε-NO2–: 16.1 ± 1.4‰) growth conditions are very similar and fall within the range previously reported for classical heterotrophic denitrification. Moreover, availability of different short-chain organic acids (succinate vs. acetate), while slightly affecting the NOx reduction dynamics, did not produce distinct differences in N and O isotope effects. N isotope fractionation in abiotic controls, although exhibiting fluctuating results, even expressed transient inverse isotope dynamics (15ε-NO2–: –12.4 ± 1.3 ‰). These findings imply that neither the mechanisms ordaining cellular uptake of short-chain organic acids nor the presence of Fe(II) seem to systematically impact the overall N and O isotope effect during NOx reduction. The similar isotope effects detected during mixotrophic and heterotrophic NOx reduction, as well as the results obtained from the abiotic controls, may not only imply that the enzymatic control of NOx reduction in putative NDFeOx bacteria is decoupled from Fe(II) oxidation, but also that Fe(II) oxidation is indirectly driven by biologically (i.e., via organic compounds) or abiotically (catalysis via reactive surfaces) mediated processes co-occurring during heterotrophic denitrification.
    Description: This study was supported by the German Research Foundation (DFG)-funded RTG 1708 “Molecular Principles of Bacterial Survival Strategies.” Work performed under the supervision of ML was supported by the University of Basel funds.
    Keywords: Denitrification ; Nitrate/nitrite isotopes ; Iron oxidation ; Isotope fractionation ; Carbon substrate
    Repository Name: Woods Hole Open Access Server
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  • 4
    Publication Date: 2023-03-08
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Franks, B. R., Tyminski, J. P., Hussey, N. E., Braun, C. D., Newton, A. L., Thorrold, S. R., Fischer, G. C., McBride, B., & Hueter, R. E. Spatio-temporal variability in white shark (Carcharodon carcharias) movement ecology during residency and migration phases in the western North Atlantic. Frontiers in Marine Science, 8, (2021): 744202, https://doi.org/10.3389/fmars.2021.744202.
    Description: Understanding how mobile, marine predators use three-dimensional space over time is central to inform management and conservation actions. Combining tracking technologies can yield powerful datasets over multiple spatio-temporal scales to provide critical information for these purposes. For the white shark (Carcharodon carcharias), detailed movement and migration information over ontogeny, including inter- and intra-annual variation in timing of movement phases, is largely unknown in the western North Atlantic (WNA), a relatively understudied area for this species. To address this need, we tracked 48 large juvenile to adult white sharks between 2012 and 2020, using a combination of satellite-linked and acoustic telemetry. Overall, WNA white sharks showed repeatable and predictable patterns in horizontal movements, although there was variation in these movements related to sex and size. While most sharks undertook an annual migratory cycle with the majority of time spent over the continental shelf, some individuals, particularly adult females, made extensive forays into the open ocean as far east as beyond the Mid-Atlantic Ridge. Moreover, increased off-shelf use occurred with body size even though migration and residency phases were conserved. Summer residency areas included coastal Massachusetts and portions of Atlantic Canada, with individuals showing fidelity to specific regions over multiple years. An autumn/winter migration occurred with sharks moving rapidly south to overwintering residency areas in the southeastern United States Atlantic and Gulf of Mexico, where they remained until the following spring/summer. While broad residency and migration periods were consistent, migratory timing varied among years and among individuals within years. White sharks monitored with pop-up satellite-linked archival tags made extensive use of the water column (0–872 m) and experienced a broad range of temperatures (−0.9 – 30.5°C), with evidence for differential vertical use based on migration and residency phases. Overall, results show dynamic inter- and intra-annual three-dimensional patterns of movements conserved within discrete phases. These results demonstrate the value of using multiple tag types to track long-term movements of large mobile species. Our findings expand knowledge of the movements and migration of the WNA white shark population and comprise critically important information to inform sound management strategies for the species.
    Description: Primary funding for this work, including research shiptime, fishing operations, and acoustic and SPOT tags, was provided by OCEARCH and its sponsors. Funding for PSATs was provided by the Shark Foundation (Hai Siftung) and the Disney Conservation Fund. PSAT data analysis was supported by a grant from NOAA/National Sea Grant to RH. Support for RH’s contributions was provided by the Perry W. Gilbert Chair in Shark Research at Mote Marine Laboratory, NOAA, and OCEARCH.
    Keywords: White shark ; Western North Atlantic ; Telemetry ; Migration ; Fidelity
    Repository Name: Woods Hole Open Access Server
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  • 5
    Publication Date: 2023-03-11
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Conte, M., Pàmies, R., Honda, M., & Herndl, G. Editorial: the oceanic particle flux and its cycling within the deep water column. Frontiers in Earth Science, 10, (2022): 1020065, https://doi.org/10.3389/feart.2022.1020065.
    Description: The oceanic particle flux transfers energy and material from the surface through the water column to the seafloor. (See review by Conte (2019) and references therein). The particle flux fuels life below the sunlit photic zone, exerts a major control on the global cycling of carbon and particle-associated elements, and also plays a major role in long-term carbon sequestration. In this Research Topic we present a collection of articles that provide a broad overview of current research on the interlinked processes controlling the magnitude and composition of the oceanic particle flux, and its cycling and depth attenuation within the deep water column.
    Keywords: Particle flux ; Deep ocean ; Marine particles ; Ocean biogeochemistry ; Carbon cycling ; Marine chemistry
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2023-03-02
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Koguchi, Y., Tokuhiro, K., Ashjian, C., Campbell, R., & Yamaguchi, A. Inter-species comparison of the copepodite stage morphology, vertical distribution, and seasonal population structure of five sympatric mesopelagic aetideid copepods in the western Arctic Ocean. Frontiers in Marine Science, 9, (2022): 943100, https://doi.org/10.3389/fmars.2022.943100.
    Description: Aetideidae is a calanoid copepod family dominant in the mesopelagic layer of the Arctic Ocean for which little ecological information is available because species identification, especially of early copepodite stages, is difficult. In this study, we developed a species identification flow for the whole copepodite stages of five sympatric aetideid copepods (Chiridius obtusifrons, Gaetanus tenuispinus, G. brevispinus, Aetideopsis multiserrata, and A. rostrata). Vertical distributions and seasonal population structures of these species were evaluated using a year-round sample time-series collected at the drifting ice station (SHEBA) in the western Arctic Ocean. Combinations of morphological characteristics (prosome length, cephalosome, and prosome widths) were used to identify the early copepodite stages to species. Aetideopsis rostrata was distributed in deep waters (1,032–1,065 m) throughout the year. The other species all were found at 600–700 m during the midnight sun. However, during the polar night, the vertical distributions of each species were distinct, resulting from ascent, descent, or depth maintenance, indicating seasonal vertical migration which may function to reduce inter-specific competition during the polar night when food resources are scarce. Reproduction timing varied among four aetideid copepods: C.obtusifrons and G. tenuispinus showed polar night ascent and reproduction at the end of the polar night, whereas G. brevispinus and A. multiserrata showed descent or depth maintenance during the polar night and reproduction at the beginning of the polar night. There was not sufficient data to examine reproduction timing of A. rostrata. Common for all aetideid species, δ15N values of the adult females indicate more carnivorous feeding modes during the polar night than those in the midnight sun. Such vertical distribution and timing of reproduction variation among these five aetideid copepods may function to reduce species competition in the mesopelagic layer of the Arctic Ocean.
    Description: Collection of the samples was supported in part by grants #OCE9707184 to CA and #OCE9707182 to RC from the US National Science Foundation. This work was partially supported by the Arctic Challenge for Sustainability II (ArCS II), Program Grant Number JPMXD1420318865. This research was also supported by the Environment Research and Technology Development Fund (JPMEERF20214002) of the Environmental Restoration and Conservation Agency of Japan. In addition, this work was partly supported by a Grant-in-Aid for Challenging Research (Pioneering) JP20K20573, and Scientific Research JP20H03054 (B), JP19H03037 (B), JP21H02263 (B), and JP17H01483 (A) from the Japanese Society for the Promotion of Science (JSPS).
    Keywords: Aetideidae ; Sympatric mesopelagic copepods ; Vertical distribution ; Population structure ; Reproduction ; The Arctic Ocean
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2023-02-21
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fairall, C. W. W., Yang, M., Brumer, S. E. E., Blomquist, B. W. W., Edson, J. B. B., Zappa, C. J. J., Bariteau, L., Pezoa, S., Bell, T. G. G., & Saltzman, E. S. S. Air-Sea trace gas fluxes: direct and indirect measurements. Frontiers in Marine Science, 9, (2022): 826606, https://doi.org/10.3389/fmars.2022.826606.
    Description: The past decade has seen significant technological advance in the observation of trace gas fluxes over the open ocean, most notably CO2, but also an impressive list of other gases. Here we will emphasize flux observations from the air-side of the interface including both turbulent covariance (direct) and surface-layer similarity-based (indirect) bulk transfer velocity methods. Most applications of direct covariance observations have been from ships but recently work has intensified on buoy-based implementation. The principal use of direct methods is to quantify empirical coefficients in bulk estimates of the gas transfer velocity. Advances in direct measurements and some recent field programs that capture a considerable range of conditions with wind speeds exceeding 20 ms-1 are discussed. We use coincident direct flux measurements of CO2 and dimethylsulfide (DMS) to infer the scaling of interfacial viscous and bubble-mediated (whitecap driven) gas transfer mechanisms. This analysis suggests modest chemical enhancement of CO2 flux at low wind speed. We include some updates to the theoretical structure of bulk parameterizations (including chemical enhancement) as framed in the COAREG gas transfer algorithm.
    Description: This work, and the contributions of MY and TB, is supported by the UK Natural Environment Research Council’s ORCHESTRA (Grant No. NE/N018095/1) and PICCOLO (Grant No. NE/P021409/1) projects, and by the European Space Agency’s AMT4OceanSatFlux project (Grant No. 4000125730/18/NL/FF/gp). CF and BB are funded by the National Oceanic and Atmospheric Administration’s Global Ocean Monitoring and Observing program (http://data.crossref.org/fundingdata/funder/10.13039/100018302). CZ was funded by the National Science Foundation (CJZ: OCE-2049579, Grants OCE-1537890 and OCE-1923935). Funding for HiWinGS was provided by the US National Science Foundation grant AGS-1036062. The Knorr-11 and SOAP campaigns were supported by the NSF Atmospheric Chemistry Program (Grant No. ATM-0426314, AGS-08568, -0851472, -0851407 and -1143709).
    Keywords: Gas transfer velocity ; Chemical enhancement ; Bubble mediated transfer ; COARE gas flux parameterization ; Dimethylsufide (DMS) ; Cardon dioxide (CO2) ; Bulk algorithm ; Direct observation
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2023-02-16
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sayigh, L., Janik, V., Jensen, F., Scott, M., Tyack, P., & Wells, R. The Sarasota Dolphin whistle database: a unique long-term resource for understanding dolphin communication. Frontiers in Marine Science, 9, (2022): 923046, https://doi.org/10.3389/fmars.2022.923046.
    Description: Common bottlenose dolphins (Tursiops truncatus) produce individually distinctive signature whistles that are learned early in life and that help animals recognize and maintain contact with conspecifics. Signature whistles are the predominant whistle type produced when animals are isolated from conspecifics. Health assessments of dolphins in Sarasota, Florida (USA) provide a unique opportunity to record signature whistles, as dolphins are briefly separated from conspecifics. Recordings were first made in the mid 1970’s, and then nearly annually since 1984. The Sarasota Dolphin Whistle Database (SDWD) now contains 926 recording sessions of 293 individual dolphins, most of known age, sex, and matrilineal relatedness. The longest time span over which an individual has been recorded is 43 years, and 85 individuals have been recorded over a decade or more. Here we describe insights about signature whistle structure revealed by this unique and expansive dataset. Signature whistles of different dolphins show great variety in their fundamental frequency contours. Signature whistle types (with ‘whistle type’ defined as all whistles visually categorized as sharing a particular frequency modulation pattern) can consist of a single stereotyped element, or loop (single-loop whistles), or of multiple stereotyped loops with or without gaps (multi-loop whistles). Multi-loop signature whistle types can also show extensive variation in both number and contour of loops. In addition, fundamental frequency contours of all signature whistle types can be truncated (deletions) or embellished (additions), and other features are also occasionally incorporated. However, even with these variable features, signature whistle types tend to be highly stereotyped and easily distinguishable due to the extensive variability in contours among individuals. In an effort to quantify this individual distinctiveness, and to compare it to other species, we calculated Beecher’s Information Statistic and found it to be higher than for any other animal signal studied so far. Thus, signature whistles have an unusually high capacity to convey information on individual identity. We briefly review the large range of research projects that the SDWD has enabled thus far, and look ahead to its potential to answer a broad suite of questions about dolphin communication.
    Description: Funding for data collection and analysis over the years has been provided by the National Science Foundation, The Royal Society of London, Dolphin Quest, Adelaide M. and Charles B. Link Foundation, Marine Mammal Commission, National Oceanic and Atmospheric Administration, Earthwatch Institute, Protect Wild Dolphins Fund of the Harbor Branch Oceanographic Institute, Grossman Family Foundation, WHOI Ocean Life Institute, Vulcan Machine Learning Center for Impact, and the Allen Institute for Artificial Intelligence. Current support for PT’s involvement is provided by the Office of Naval Research Grants N00014-18-1-2062 and N00014-20-1-2709 through a subaward from Carnegie Mellon University. Current support for LS’s involvement is provided by the Adelaide M. & Charles B. Link Foundation and Dolphin Quest.
    Keywords: Signature whistle ; Communication ; Cognition ; Database ; Individual identity
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2023-03-13
    Description: Goniodomin A (GDA, 1) is a phycotoxin produced by at least four species of Alexandrium dinoflagellates that are found globally in brackish estuaries and lagoons. It is a linear polyketide with six oxygen heterocyclic rings that is cyclized into a macrocyclic structure via lactone formation. Two of the oxygen heterocycles in 1 comprise a spiro-bis-pyran, whereas goniodomin B (GDB) contains a 2,7-dioxabicyclo[3.3.1]nonane ring system fused to a pyran. When H2O is present, 1 undergoes facile conversion to isomer GDB and to an α,β-unsaturated ketone, goniodomin C (GDC, 7). GDB and GDC can be formed from GDA by cleavage of the spiro-bis-pyran ring system. GDA, but not GDB or GDC, forms a crown ether-type complex with K+. Equilibration of GDA with GDB and GDC is observed in the presence of H+ and of Na+, but the equilibrated mixtures revert to GDA upon addition of K+. Structural differences have been found between the K+ and Na+ complexes. The association of GDA with K+ is strong, while that with Na+ is weak. The K+ complex has a compact, well-defined structure, whereas Na+ complexes are an ill-defined mixture of species. Analyses of in vitro A. monilatum and A. hiranoi cultures indicate that only GDA is present in the cells; GDB and GDC appear to be postharvest transformation products.
    Repository Name: EPIC Alfred Wegener Institut
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  • 10
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    American Chemical Society
    In:  EPIC3Environmental Science & Technology Letters, American Chemical Society
    Publication Date: 2024-01-24
    Repository Name: EPIC Alfred Wegener Institut
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