ALBERT

Beschreibung: Ocean acidification is an escalating environmental issue and associated changes in the ocean carbonate system have implications for many calcifying organisms. The present study followed the growth of Sepia officinalis from early-stage embryos, through hatching, to 7-week-old juveniles. Responses of cuttlefish to elevated pCO(2) (hypercapnia) were investigated to test the impacts of near-future and extreme ocean acidification conditions on growth, developmental time, oxygen consumption, and yolk utilization as proxies for individual fitness. We further examined gross morphological characteristics of the internal calcareous cuttlebone to determine whether embryonically secreted shell lamellae are impacted by environmental hypercapnia. Embryonic growth was reduced and hatching delayed under elevated pCO(2), both at environmentally relevant levels (0.14 kPa pCO(2) similar to predicted ocean conditions in 2100) and extreme conditions (0.40 kPa pCO(2)). Comparing various metrics from control and intermediate treatments generally showed no significant difference in experimental measurements. Yet, results from the high pCO(2) treatment showed significant changes compared with controls and revealed a consistent general trend across the three treatment levels. The proportion of animal mass contributed by the cuttlebone increased in both elevated pCO(2) treatments. Gross cuttlebone morphology was affected under such conditions and cuttlebones of hypercapnic individuals were proportionally shorter. Embryonic shell morphology was maintained consistently in all treatments, despite compounding hypercapnia in the perivitelline fluid; however, post-hatching, hypercapnic animals developed denser cuttlebone laminae in shorter cuttlebones. Juvenile cuttlefish in acidified environments thus experience lower growth and yet increased calcification of their internal shell. The results of this study support recent findings that early cuttlefish life stages are more vulnerable towards hypercapnia than juveniles and adults, which may have negative repercussions on the biological fitness of cuttlefish hatchlings in future oceans.

Beschreibung: Annual growth zones in cod otoliths from the eastern Baltic stock are less discrete than in other cod stocks leading to biased age reading, which recently led to a failure of age-based assessment in the eastern Baltic cod stock. In this study, we explored the applicability of minor and trace element patterns in cod otoliths for age determination. By first identifying elements of interest in a stock without ageing problems, western Baltic cod, we then tested their applicability on another stock without ageing problems, North Sea cod, and finally applied this knowledge to estimate age of eastern Baltic cod. In western Baltic cod, matching patterns with respect to occurrence of minima and maxima in both otolith opacity and element concentrations were found for Cu, Zn, and Rb, and inverse patterns with Mg and Mn. No match was found for Pb, Ba, and Sr. In the test stock, the North Sea cod, the same patterns in Cu, Zn, Rb, Mg, and Mn signals occurred. All eastern Baltic cod with low visual contrast between growth zones exhibited clearly defined synchronous cycles in Cu, Zn, Rb and Pb. Using a combined finite differencing method and structural break models approach, the statistical significance of the local profile minima were identified, based on which their age could be estimated. Despite extensive environmental differences between the three areas examined, the element concentrations of Cu, Zn, and Rb were strongly correlated in all individuals with similar correlations in all three areas, suggesting that the incorporation mechanisms are the same for these elements and independent of environmental concentrations.

Beschreibung: Global warming and ocean acidification are among the most important stressors for aquatic ecosystems in the future. To investigate their direct and indirect effects on a near-natural plankton community, a multiple-stressor approach is needed. Hence, we set up mesocosms in a full-factorial design to study the effects of both warming and high CO2 on a Baltic Sea autumn plankton community, concentrating on the impacts on microzooplankton (MZP). MZP abundance, biomass, and species composition were analysed over the course of the experiment. We observed that warming led to a reduced time-lag between the phytoplankton bloom and an MZP biomass maximum. MZP showed a significantly higher growth rate and an earlier biomass peak in the warm treatments while the biomass maximum was not affected. Increased pCO2 did not result in any significant effects on MZP biomass, growth rate, or species composition irrespective of the temperature, nor did we observe any significant interactions between CO2 and temperature. We attribute this to the high tolerance of this estuarine plankton community to fluctuations in pCO2, often resulting in CO2 concentrations higher than the predicted end-of-century concentration for open oceans. In contrast, warming can be expected to directly affect MZP and strengthen its coupling with phytoplankton by enhancing its grazing pressure.

Beschreibung: It is currently under debate whether organisms that regulate their acid–base status under environmental hypercapnia demand additional energy. This could impair animal fitness, but might be compensated for via increased ingestion rates when food is available. No data are yet available for dominant Calanus spp. from boreal and Arctic waters. To fill this gap, we incubated Calanus glacialis at 390, 1120, and 3000 µatm for 16 d with Thalassiosira weissflogii (diatom) as food source on-board RV Polarstern in Fram Strait in 2012. Every 4 d copepods were subsampled from all CO2 treatments and clearance and ingestion rates were determined. During the SOPRAN mesocosm experiment in Bergen, Norway, 2011, we weekly collected Calanus finmarchicus from mesocosms initially adjusted to 390 and 3000 µatm CO2 and measured grazing at low and high pCO2. In addition, copepods were deep frozen for body mass analyses. Elevated pCO2 did not directly affect grazing activities and body mass, suggesting that the copepods did not have additional energy demands for coping with acidification, neither during long-term exposure nor after immediate changes in pCO2. Shifts in seawater pH thus do not seem to challenge these copepod species.

Beschreibung: In a recent publication (Froese et al., ICES Journal of Marine Science; doi:10.1093/icesjms/fsv122), we presented a critique of the balanced harvesting (BH) approach to fishing. A short section dealt with the size-spectrum models used to justify BH, wherein we pointed out the lack of realism of these models, which mostly represented ecosystems as consisting of a single cannibalistic species. Andersen et al. (ICES Journal of Marine Science; doi:10.1093/icesjms/fsv211) commented on our paper and suggested that we criticized size-spectrum models in general and that we supposedly made several erroneous statements. We stress that we only referred to the size-spectrum models that we cited, and we respond to each supposedly erroneous statement. We still believe that the size-spectrum models used to justify BH were highly unrealistic and not suitable for evaluating real-world fishing strategies. We agree with Andersen et al. that BH is unlikely to be a useful guiding principle for ecosystem-based fisheries management, for many reasons. The use of unrealistic models is one of them.

Beschreibung: The quest for the ideal therapeutic target in chronic kidney disease (CKD) has been riddled with many obstacles stemming from the molecular complexity of the disease and its co-morbidities. Recent advances in omics technologies and the resulting amount of available data encompassing genomics, proteomics, peptidomics, transcriptomics and metabolomics has created an opportunity for integrating omics datasets to build a comprehensive and dynamic model of the molecular changes in CKD for the purpose of biomarker and drug discovery. This article reviews relevant concepts in omics data integration using systems biology, a mathematical modelling method that globally describes a biological system on the basis of its modules and the functional connections that govern their behaviour. The review describes key databases and bioinformatics tools, as well as the challenges and limitations of the current state of the art, along with practical application to CKD therapeutic target discovery. Moreover, it describes how systems biology and visualization tools can be used to generate clinically relevant molecular models with the capability to identify specific disease pathways, recognize key events in disease development and track disease progression.

Beschreibung: This paper applies nonlinear Bayesian inversion to marine controlled source electromagnetic (CSEM) data collected near two sites of the Integrated Ocean Drilling Program (IODP) Expedition 311 on the northern Cascadia Margin to investigate subseafloor resistivity structure related to gas hydrate deposits and cold vents. The Cascadia margin, off the west coast of Vancouver Island, Canada, has a large accretionary prism where sediments are under pressure due to convergent plate boundary tectonics. Gas hydrate deposits and cold vent structures have previously been investigated by various geophysical methods and seabed drilling. Here, we invert time-domain CSEM data collected at Sites U1328 and U1329 of IODP Expedition 311 using Bayesian methods to derive subsurface resistivity model parameters and uncertainties. The Bayesian information criterion is applied to determine the amount of structure (number of layers in a depth-dependent model) that can be resolved by the data. The parameter space is sampled with the Metropolis–Hastings algorithm in principal-component space, utilizing parallel tempering to ensure wider and efficient sampling and convergence. Nonlinear inversion allows analysis of uncertain acquisition parameters such as time delays between receiver and transmitter clocks as well as input electrical current amplitude. Marginalizing over these instrument parameters in the inversion accounts for their contribution to the geophysical model uncertainties. One-dimensional inversion of time-domain CSEM data collected at measurement sites along a survey line allows interpretation of the subsurface resistivity structure. The data sets can be generally explained by models with 1 to 3 layers. Inversion results at U1329, at the landward edge of the gas hydrate stability zone, indicate a sediment unconformity as well as potential cold vents which were previously unknown. The resistivities generally increase upslope due to sediment erosion along the slope. Inversion results at U1328 on the middle slope suggest several vent systems close to Bullseye vent in agreement with ongoing interdisciplinary observations.

Beschreibung: The TAMMAR segment of the Mid-Atlantic Ridge forms a classic propagating system centred about two degrees south of the Kane Fracture Zone. The segment is propagating to the south at a rate of 14 mm yr−1, 15 per cent faster than the half-spreading rate. Here, we use seismic refraction data across the propagating rift, sheared zone and failed rift to investigate the crustal structure of the system. Inversion of the seismic data agrees remarkably well with crustal thicknesses determined from gravity modelling. We show that the crust is thickened beneath the highly magmatic propagating rift, reaching a maximum thickness of almost 8 km along the seismic line and an inferred (from gravity) thickness of about 9 km at its centre. In contrast, the crust in the sheared zone is mostly 4.5–6.5 km thick, averaging over 1 km thinner than normal oceanic crust, and reaching a minimum thickness of only 3.5 km in its NW corner. Along the seismic line, it reaches a minimum thickness of under 5 km. The PmP reflection beneath the sheared zone and failed rift is very weak or absent, suggesting serpentinisation beneath the Moho, and thus effective transport of water through the sheared zone crust. We ascribe this increased porosity in the sheared zone to extensive fracturing and faulting during deformation. We show that a bookshelf-faulting kinematic model predicts significantly more crustal thinning than is observed, suggesting that an additional mechanism of deformation is required. We therefore propose that deformation is partitioned between bookshelf faulting and simple shear, with no more than 60 per cent taken up by bookshelf faulting.

Beschreibung: Aquatic invertebrate communities are influenced by interactions between the abiotic and biotic environment at multiple spatial and temporal scales. Studies of mesozooplankton community patterns in relation to spatial and temporal scales are rare. In this study, we examined scale-specific variability of mesozooplankton in the shallow coastal Baltic Sea and related this variability to key environmental proxies. Seasonality defined the majority of variability in taxonomic composition and abundance patterns, as well as in aggregated parameters of zooplankton. However, these properties also varied spatially at a large, 100-km scale. The variability in all properties except taxonomic composition was negligible at the smaller spatial scale. Taxonomic richness increased until moderate levels of total abundance, whereas peak blooms were always characterized by higher dark diversity. Shannon diversity was unrelated to total abundance. Observed spatio-temporal patterns were strongly related to abiotic forcing and uncoupled from phytoplankton standing stock and primary production. Results show the importance of seasonality over spatial variability and abiotic factors over phytoplankton variability for sub-boreal brackish coastal mesozooplankton at the spatial scales studied. Information loss from spatial generalization can be larger for taxonomic occurrences and rare species than for species abundances and aggregated community parameters such as total abundance or taxonomic richness.

Beschreibung: Little is known about the effects that subducting an oceanic large igneous province (LIP) has on the petrogenesis of submarine arc volcanoes and their geochemical composition. The southern Kermadec arc represents a rare example where an LIP—the Hikurangi Plateau—is currently subducting and where its effect on mantle composition, element recycling and arc volcanism can be studied. We present mineral chemistry and whole-rock major and trace element, and Sr–Nd–Pb isotope data from samples recovered from the southern Kermadec arc volcanoes Rumble II East and Rumble II West, together with shipboard gravity and magnetic measurements. The Rumble II volcanoes (including a volcanic cone ∼10 km further west) form an ∼23 km long arc–backarc transect located ∼250 km north of New Zealand above the subducting Hikurangi Plateau. Although only a short distance apart, rocks from the two volcanoes have different mineral and whole-rock geochemical compositions. Lavas from Rumble II East are predominantly basaltic and contain primitive olivine phenocrysts (≤Fo91), high-Mg# clinopyroxene (≤96) and anorthitic plagioclase (≤An97). Geochemically these lavas are very diverse and cover a spectrum from low Th/Yb (〈0·15) at high Ba/Th (〉1014) to higher Th/Yb (〉0·15) at lower Ba/Th (〈844). This spectrum, together with 206Pb/204Pb and 143Nd/144Nd in the range of 18·74–18·83 and 0·51309–0·51298 respectively (at similar to slightly elevated 87Sr/86Sr), suggests a mantle wedge that has undergone previous melt extraction and significant fluid addition from the subducting Pacific Plate and that contains sediment and HIMU-type Hikurangi Plateau components. The geochemistry of the sediment–HIMU-type components is exemplified in an olivine pyroxenite (e.g. 206Pb/204Pb = 20·02; 87Sr/86Sr = 0·70516; 143Nd/144Nd = 0·5126). We propose that the olivine pyroxenite formed through melt or fluid–rock metasomatism and represents the first direct evidence of a near Moho arc mantle rock that shows the imprint from a subducting HIMU-type (Hikurangi) seamount. Conversely, lavas from Rumble II West and the cone ∼10 km to the west are generally more silica rich than Rumble II East lavas and mainly contain plagioclase with less ortho- and clinopyroxene + olivine phenocrysts. The low Ba/Th (〈470) and 206Pb/204Pb (〈18·74), a range of 143Nd/144Nd (0·51297–0·51307) and elevated Th/Yb (0·13–0·39) in these lavas can best be explained by minor sediment input into a less depleted mantle wedge. In addition, the geochemical composition of the Rumble II West lavas does not require involvement of a Hikurangi component, placing a spatial limit on Hikurangi material influencing regional melt generation beneath the backarc. Supported by a gravity model requiring two distinct magma chambers, the different geochemical compositions of Rumble II East and West lavas are inconsistent with a shared magma plumbing system. The different geochemical compositions of lavas from the two Rumble II volcanoes furthermore demonstrate that across-arc geochemical heterogeneities can occur within a few kilometres and may originate from both a geochemically heterogeneous mantle wedge and Moho transition layer, recording inherited geochemical heterogeneities beneath the volcanoes.