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  • 1
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2023-01-03
    Description: Dataset: Upper-pelagic particle numbers from imagery in the Sargasso Sea and in the Gulf of Trieste
    Description: This dataset represents Log10-particle numbers per volume versus log10-particle size bins at various threshold levels of the image analysis program taken between 4 and 7-meter depth in the Sargasso Sea and the Gulf of Trieste on July 18, 2021. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884596
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-2128438
    Keywords: particle numbers ; shadowgraph imaging ; aquatic gels
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 2
    Publication Date: 2023-01-03
    Description: Dataset: Carbonate chemistry
    Description: Carbonate chemistry data collected as part of a study of the "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" (Barreto Filho et al., 2022). The following results abstract describes these data along with related datasets which can be accessed from the "Related Datasets" section of this page. Many microbial photoautotrophs depend on heterotrophic bacteria for accomplishing essential functions. Environmental changes, however, could alter or eliminate such interactions. We investigated the effects of changing pCO2 on gene expression in co-cultures of 3 strains of picocyanobacteria (Synechococcus strains CC9311 and WH8102 and Prochlorococcus strain MIT9312) paired with the ‘helper’ bacterium Alteromonas macleodii EZ55. Co-culture with cyanobacteria resulted in a much higher number of up- and down-regulated genes in EZ55 than pCO2 by itself. Pathway analysis revealed significantly different expression of genes involved in carbohydrate metabolism, stress response, and chemotaxis, with different patterns of up- or down-regulation in co-culture with different cyanobacterial strains. Gene expression patterns of organic and inorganic nutrient transporter and catabolism genes in EZ55 suggested resources available in the culture media were altered under elevated (800 ppm) pCO2 conditions. Altogether, changing expression patterns were consistent with the possibility that the composition of cyanobacterial excretions changed under the two pCO2 regimes, causing extensive ecophysiological changes in both members of the co-cultures. Additionally, significant downregulation of oxidative stress genes inMIT9312/EZ55 cocultures at 800 ppm pCO2 were consistent with a link between the predicted reduced availability of photorespiratory byproducts (i.e., glycolate/2PG) under this condition and observed reductions in internal oxidative stress loads for EZ55, providing a possible explanation for the previously observed lack of “help” provided by EZ55 to MIT9312 under elevated pCO2. The data stored in this archive permit the recalculation of the pH measurements shown in Table 1 of the results publication Barreto Filho et al. (2022). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883120
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1851085
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 3
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (juvenile oyster condition index)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess the sustainability of oyster populations, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three sites within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML), and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from the inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth, and recruitment were checked monthly. At the midpoint and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the traits of juvenile oysters approximately one month after the initiation of the experiment. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885817
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Predation risk ; Comparative experimental approach ; phenotype ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 4
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (adult oyster survival)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the survival of adult oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884130
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Eastern oyster ; phenotype ; traits ; fitness ; Predation risk ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 5
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (juvenile oyster growth)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the growth of juvenile oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885493
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Growth increment ; Predation risk ; environmental gradients ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 6
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (juvenile oyster survival)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML), and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from the inlet and closest to freshwater input, and the ML site occurs between the inlet and the freshwater input. Oyster survival, growth, and recruitment were checked monthly. At the midpoint and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the survival of juvenile oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885259
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Predation risk ; nonconsumptive effect ; vital rate
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 7
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (oyster recruitment)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability of oyster populations, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the recruitment of larval oysters to the experimental treatments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885720
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Predation risk ; larval recruitment ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 8
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (adult oyster condition index)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the condition index of adult oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/885078
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: Oyster ; phenotype ; Predation risk ; fitness ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 9
    Publication Date: 2023-01-11
    Description: Dataset: Results of risk-addition experiment (adult oyster growth)
    Description: The eastern oyster (Crassostrea virginica) is a foundation species in northeast Florida estuaries, including the Guana Tolomato Matanzas National Estuarine Research Reserve (GTMNERR), where intertidal reefs are extensive. Estuarine research to assess sustainability and oyster population, plus various monitoring studies and oyster reef restoration projects have been undertaken, with an additional focus on testing theory regarding the effects of predation risk in the natural environment. As part of a study that manipulatively “pressed” risk cues onto oyster prey, a field experiment was conducted on oyster reefs in the Guana Tolomato Matanzas National Estuarine Research Reserve (Ponte Vedra Beach, Florida) from June to November 2012. Three areas within the southern areas of the GTM NERR (south of Matanzas inlet) were used in the experiment: Summer Island North (SIN), Marine Land (ML) and Pellicer Flats (PF). The SIN site occurred closest to the inlet (farthest from freshwater input), the PF site occurred farthest from inlet and closest to freshwater input, while the ML site occurs between the inlet and the freshwater input. Oyster survival, growth and recruitment were checked monthly. At the mid point and conclusion of the experiment, individual oysters were also destructively sampled to quantify differences in oyster traits (shell versus tissue mass) as a function of experimental treatment and location. This submission concerns the growth of adult oysters. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884362
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736943, NSF Division of Ocean Sciences (NSF OCE) OCE-1820540
    Keywords: growth ; Predation risk ; nonconsumptive effect
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Expected Availability
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  • 10
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    Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research
    In:  EPIC3Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research
    Publication Date: 2023-06-21
    Description: IceBird Winter 2023 is part of a long-term sea ice observation program within the IceBird aircraft campaign series. IceBird was initiated in 2018 with the objective to ensure the long-term availability of a unique data record of direct sea-ice thickness observations to understand the role of the sea ice component for the causes and consequences of Arctic change, but is built on the heritage of airborne sea-ice thickness observations that date back to 2004. Compared to earlier airborne programs, IceBird has been enhanced with an improved sensor setup that also allows measuring snow depth on sea ice, fully collocated with sea-ice thickness and surface roughness at high resolution. The objectives of IceBird Winter 2023 include the continued quantification of trends, the separation of variability and extreme events of sea ice thickness and its snow cover in the Western Seas of the Arctic Ocean. The continuation of airborne sea-ice observation programs fulfils the requirement of consistent and long-term observations of key climate parameters. The data will be used to improve understanding of the response of sea ice and its snow cover to the ongoing warming of the Arctic and to improve snow models. Airborne data of snow and sea-ice thickness are also critically needed for the evaluation of sea-ice remote sensing products as well as for the evolution of algorithms for current and future satellite missions. Surveys from IceBird Winter 2023 will target the validation of sea-ice freeboard and snow depth estimates from CryoSat-2, ICESat-2, Sentinel-3A/B and AltiKa altimeters.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Other , notRev
    Format: application/pdf
    Location Call Number Expected Availability
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