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  • 1
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    Ethics and Drug Resistance: Collective Responsibility for Global Public Health (2020)
    Springer Nature | Springer International Publishing
    Details
    Publication Date: 2024-04-05
    Description: This Open Access volume provides in-depth analysis of the wide range of ethical issues associated with drug-resistant infectious diseases. Antimicrobial resistance (AMR) is widely recognized to be one of the greatest threats to global public health in coming decades; and it has thus become a major topic of discussion among leading bioethicists and scholars from related disciplines including economics, epidemiology, law, and political theory. Topics covered in this volume include responsible use of antimicrobials; control of multi-resistant hospital-acquired infections; privacy and data collection; antibiotic use in childhood and at the end of life; agricultural and veterinary sources of resistance; resistant HIV, tuberculosis, and malaria; mandatory treatment; and trade-offs between current and future generations. As the first book focused on ethical issues associated with drug resistance, it makes a timely contribution to debates regarding practice and policy that are of crucial importance to global public health in the 21st century.
    Keywords: Bioethics ; Drug Resistance ; Infectious Diseases ; Moral Philosophy and Applied Ethics ; Medical Microbiology ; Internal Medicine ; antimicrobial resistance ; public health ethics ; collective responsibility ; infectious disease ; global health ; hospital acquired infection ; animal ethics ; animal epidemiology ; TB resistance and human rights ; TB resistance in developing countries ; privacy and data collection ; ethics and AMR regulation ; ethics of drug development ; Pharmacology ; Infectious & contagious diseases ; thema EDItEUR::P Mathematics and Science::PS Biology, life sciences::PSA Life sciences: general issues::PSAD Bioethics ; thema EDItEUR::M Medicine and Nursing::MK Medical specialties, branches of medicine::MKG Pharmacology ; thema EDItEUR::M Medicine and Nursing::MJ Clinical and internal medicine::MJC Diseases and disorders::MJCJ Infectious and contagious diseases
    Language: English
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  • 2
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    The linkage of 13C and 15N soil depth gradients with C:N and O:C stoichiometry reveals tree species effects on organic matter turnover in soil (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-19
    Description: The knowledge of tree species dependent turnover of soil organic matter (SOM) is limited, yet required to understand the carbon sequestration function of forest soil. We combined investigations of 13C and 15N and its relationship to elemental stoichiometry along soil depth gradients in 35-year old monocultural stands of Douglas fir (Pseudotsuga menziesii), black pine (Pinus nigra), European beech (Fagus sylvatica) and red oak (Quercus rubra) growing on a uniform post-mining soil. We investigated the natural abundance of 13C and 15N and the carbon:nitrogen (C:N) and oxygen:carbon (O:C) stoichiometry of litterfall and fine roots as well as SOM in the forest floor and mineral soil. Tree species had a significant effect on SOM δ13C and δ15N reflecting significantly different signatures of litterfall and root inputs. Throughout the soil profile, δ13C and δ15N were significantly related to the C:N and O:C ratio which indicates that isotope enrichment with soil depth is linked to the turnover of organic matter (OM). Significantly higher turnover of OM in soils under deciduous tree species depended to 46% on the quality of litterfall and root inputs (N content, C:N, O:C ratio), and the initial isotopic signatures of litterfall. Hence, SOM composition and turnover also depends on additional—presumably microbial driven—factors. The enrichment of 15N with soil depth was generally linked to 13C. In soils under pine, however, with limited N and C availability, the enrichment of 15N was decoupled from 13C. This suggests that transformation pathways depend on litter quality of tree species.
    Description: Universität Trier (3163)
    Keywords: ddc:550.78 ; Stable isotopes ; Microbial turnover ; Litter ; Roots ; Common garden experiment ; Recultivated forest soil
    Language: English
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  • 3
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    Phosphorus and carbon in soil particle size fractions: A synthesis (2020)
    Springer International Publishing
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    Publication Date: 2023-06-19
    Description: Despite the importance of phosphorus (P) as a macronutrient, the factors controlling the pool sizes of organic and inorganic P (OP and IP) in soils are not yet well understood. Therefore, the aim of this study was to gain insights into the pools sizes of OP, IP and organic carbon (OC) in soils and soil particle size fractions. For this purpose, I analyzed the distribution of OP, IP, and OC among particle size fractions depending on geographical location, climate, soil depth, and land use, based on published data. The clay size fraction contained on average 8.8 times more OP than the sand size fraction and 3.9 and 3.2 times more IP and OC, respectively. The OP concentrations of the silt and clay size fraction were both negatively correlated with mean annual temperature (R2 = 0.30 and 0.31, respectively, p 〈 0.001). The OC:OP ratios of the silt and clay size fraction were negatively correlated with latitude (R2 = 0.49 and 0.34, respectively, p 〈 0.001). Yet, the OC:OP ratio of the clay size fraction changed less markedly with latitude than the OC:OP ratio of the silt and the sand size fraction. The OC concentrations of all three particle size fractions were significantly (p 〈 0.05) lower in soils converted to cropland than in adjacent soils under natural vegetation. In contrast, the OP concentration was only significantly (p 〈 0.05) decreased in the sand size fraction but not in the other two particle size fractions due to land-use change. Thus, the findings suggest that OP is more persistent in soil than OC, which is most likely due to strong sorptive stabilization of OP compounds to mineral surfaces.
    Description: German Research Foundation
    Keywords: ddc:631.4 ; Ecological stoichiometry ; Soil nutrients ; Organo-mineral interactions ; Land-use change ; Soil organic matter stabilization ; Persistence ; Soil particle size fractions ; Element ratios ; Organic phosphorus
    Language: English
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  • 4
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    Fate and stability of dissolved organic carbon in topsoils and subsoils under beech forests (2020)
    Kalks, Fabian ; Liebmann, Patrick ; Wordell-Dietrich, Patrick ; [et al.]
    Springer International Publishing
    Details
    Publication Date: 2023-06-19
    Description: Dissolved organic carbon (DOC) from Oa horizons has been proposed to be an important contributor for subsoil organic carbon stocks. We investigated the fate of DOC by directly injecting a DOC solution from 13C labelled litter into three soil depths at beech forest sites. Fate of injected DOC was quantified with deep drilling soil cores down to 2 m depth, 3 and 17 months after the injection. 27 ± 26% of the injected DOC was retained after 3 months and 17 ± 22% after 17 months. Retained DOC was to 70% found in the first 10 cm below the injection depth and on average higher in the topsoil than in the subsoil. After 17 months DOC in the topsoil was largely lost (− 19%) while DOC in the subsoil did not change much (− 4.4%). Data indicated a high stabilisation of injected DOC in the subsoils with no differences between the sites. Potential mineralisation as revealed by incubation experiments however, was not different between DOC injected in topsoil or subsoils underlining the importance of environmental factors in the subsoil for DOC stabilisation compared to topsoil. We conclude that stability of DOC in subsoil is primary driven by its spatial inaccessibility for microorganisms after matrix flow while site specific properties did not significantly affect stabilisation. Instead, a more fine-textured site promotes the vertical transport of DOC due to a higher abundance of preferential flow paths.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:550.78 ; Forest subsoils ; Cascade model ; Incubation experiment ; 13C ; Field experiment
    Language: English
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  • 5
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    The fate of calcium in temperate forest soils: a Ca K-edge XANES study (2020)
    Springer International Publishing
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    Publication Date: 2023-06-19
    Description: Calcium (Ca) plays a crucial role for plant nutrition, soil aggregation, and soil organic matter (SOM) stabilization. Turnover and ecological functions of Ca in soils depend on soil Ca speciation. For the first time, we used synchrotron-based X-ray absorption near-edge structure (XANES) spectroscopy at the Ca K-edge (4038 eV) to investigate Ca speciation in soils. We present Ca K-edge XANES spectra of standard compounds with relevance in soils (e.g. calcite, dolomite, hydroxyapatite, anorthite, clay mineral-adsorbed Ca; Ca oxalate, formate, acetate, citrate, pectate, phytate). Calcium XANES spectra with good signal-to-noise ratios were acquired in fluorescence mode for Ca concentrations between 1 and 10 mg g−1. Most standard spectra differed markedly among each other, allowing the identification of different Ca species in soils and other environmental samples as well as Ca speciation by linear combination fitting. Calcium XANES spectra obtained for samples from different horizons of twelve temperate forest soils revealed a change from dominating lithogenic Ca to clay mineral-bound and/or organically bound Ca with advancing pedogenesis. O layer Ca was almost exclusively organically bound. With increasing SOM decomposition, shares of oxalate-bound Ca decreased. Oxalate-bound Ca was absent in calcareous, but not in silicate subsoil horizons, which can be explained by microbial decomposition in the former vs. stabilization by association to pedogenic minerals in the latter soils. Synchrotron-based Ca XANES spectroscopy is a promising novel tool to investigate the fate of Ca during pedogenesis and—when performed with high spatial resolution (µ-XANES), to study aggregation and SOM stabilization mechanisms produced by Ca.
    Description: BLE Waldklimafonds
    Description: Projekt DEAL
    Keywords: ddc:631.4 ; Ca speciation ; Calcareous soils ; Plant foliage ; Silicate soils ; Soil Ca forms ; XANES spectroscopy
    Language: English
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  • 6
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    Accumulation of germanium (Ge) in plant tissues of grasses is not solely driven by its incorporation in phytoliths (2020)
    Springer International Publishing
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    Publication Date: 2023-06-19
    Description: Ge/Si ratios of plant phytoliths have been widely used to trace biogeochemical cycling of Si. However, until recently, information on how much of the Ge and Si transferred from soil to plants is actually stored in phytoliths was lacking. The aim of the present study is to (i) compare the uptake of Si and Ge in three grass species, (ii) localize Ge and Si stored in above-ground plant parts and (iii) evaluate the amounts of Ge and Si sequestrated in phytoliths and plant tissues. Mays (Zea mays), oat (Avena sativa) and reed canary grass (Phalaris arundinacea) were cultivated in the greenhouse on soil and sand to control element supply. Leaf phytoliths were extracted by dry ashing. Total elemental composition of leaves, phytoliths, stems and roots were measured by ICP-MS. For the localization of phytoliths and the determination of Ge and Si within leaf tissues and phytoliths scanning electron microscopy (SEM), energy dispersive x-ray spectroscopy (EDX) and laser ablation inductively coupled mass spectrometry (LA-ICP-MS) was used. The amounts of Si and Ge taken up by the species corresponded with biomass formation and decreased in the order Z. mays 〉 P. arundinacea, A. sativa. Results from LA-ICP-MS revealed that Si was mostly localized in phytoliths, while Ge was disorderly distributed within the leaf tissue. In fact, from the total amounts of Ge accumulated in leaves only 10% was present in phytoliths highlighting the role of organic matter on biogeochemical cycling of Ge and the necessity for using bulk Ge/Si instead of Ge/Si in phytoliths to trace biogeochemical cycling of Si.
    Keywords: ddc:550.724 ; Germanium ; Ge/Si ratio ; Phytoliths ; Poaceae ; LA-ICP-MS
    Language: English
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  • 7
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    Biogeochemical cycling of phosphorus in subsoils of temperate forest ecosystems (2020)
    Springer International Publishing
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    Publication Date: 2023-06-19
    Description: Tree roots penetrate the soil to several meters depth, but the role of subsoils for the supply of nutrient elements such as phosphorus (P) to the trees is poorly understood. Here, we tested the hypothesis that increased P deficiency in the topsoil results in an increased microbial recycling of P from the forest subsoil. We sampled soils from four German temperate forest sites representing a gradient in total P stocks. We analyzed the oxygen isotopic composition of HCl-extractable phosphate (δ18OP) and identified differences in P speciation with increasing soil depth using X-ray absorption near-edge structure (XANES) spectroscopy. We further determined microbial oxygen demand with and without nutrient supply at different soil depths to analyse nutrient limitation of microbial growth and used nanoscale secondary ion mass spectrometry (NanoSIMS) to visualize spatial P gradients in the rhizosphere. We found that δ18OP values in the topsoil of all sites were close to the isotopic signal imparted by biological cycling when oxygen isotopes in phosphate are exchanged by enzymatic activity. However, with increasing soil depth and increasing HCl-P concentrations, δ18Ο values continuously decreased towards values expected for primary minerals in parent material at depths below 60 cm at sites with high subsoil P stocks and below more than 2 m at sites with low subsoil P stocks, respectively. For these depths, XANES spectra also indicated the presence of apatite. NanoSIMS images showed an enrichment of P in the rhizosphere in the topsoil of a site with high P stocks, while this P enrichment was absent at a site with low P stocks and in both subsoils. Addition of C, N and P alone or in combination revealed that microbial activity in subsoils of sites with low P stocks was mostly P limited, whereas sites with high P stocks indicated N limitation or N and P co-limitation. We conclude that subsoil P resources are recycled by trees and soil microorganisms. With continued weathering of the bedrock and mobilisation of P from the weathered rocks, P cycling will proceed to greater depths, especially at sites characterised by P limitation.
    Description: Rheinische Friedrich-Wilhelms-Universität Bonn (1040)
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Description: Rheinische Friedrich-Wilhelms-Universität Bonn (1040)
    Keywords: ddc:551.9 ; Oxygen isotopes ; Phosphate ; NanoSIMS ; XANES ; Microbial P cycling ; Soil
    Language: English
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  • 8
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    Microsites and early litter decomposition patterns in the soil and forest canopy at regional scale (2020)
    Springer International Publishing
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    Publication Date: 2023-06-20
    Description: Plant litter decomposition is a key ecological process that is mostly studied at the forest floor. However, decomposition generally starts in the canopy. In this study, we evaluated the effect of litter composition and climate on the initial phase of decomposition in the soil and two contrasting types of canopy microsites along an elevational gradient (0–2200 m a.s.l.). To this end, we incubated standard material composed by green (fast decomposing) and rooibos (slow decomposing) tea bags for three months. Tea bags were placed in soil (buried at 5 cm) and in the canopy at ca. 5 m above the ground in “micro-wetlands” (tank bromeliads) and dry crown microsites (branches). Along the elevational gradient, green tea decomposed faster than rooibos tea in all microsites and forests. Mass loss for both tea types was lowest on branches at all sites, except for green tea in a wet forest where decomposition did not significantly differ among microsites. In wet forests, decomposition did not differ between bromeliads and soil, while in a dry forest, decomposition was faster in bromeliads. We found that the effects of climatic variables [monthly average temperature (TEMP) and total precipitation (PREC) for the incubation months] on decomposition differed between microsites. Along the elevational gradient, the mass loss in soil was positively correlated with TEMP but not with PREC, whereas on branches, mass loss was negatively correlated with TEMP and positively correlated with PREC. Unlike on branches, mass loss in bromeliads slightly decreased with PREC and increased with TEMP. Our study shows that microsite conditions interact with climate (TEMP and PREC) leading to differences in the general decomposition patterns in the forest canopy.
    Description: CONACYT
    Description: Deutscher Akademischer Austauschdienst http://dx.doi.org/10.13039/501100001655
    Description: Heinz Neumüller Stiftung
    Description: Carl von Ossietzky Universität Oldenburg (3092)
    Keywords: ddc:631.4 ; Arboreal soil ; Elevational gradient ; Tea bag index ; Epiphytes ; Bromeliads
    Language: English
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  • 9
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    Soil greenhouse gas fluxes following conventional selective and reduced-impact logging in a Congo Basin rainforest (2020)
    Springer International Publishing
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    Publication Date: 2023-06-20
    Description: Selective logging is among the main causes of tropical forest degradation, but little is known about its effects on greenhouse gas (GHG) fluxes from highly weathered Ferralsol soils in Africa. We measured soil CO2, N2O, and CH4 fluxes, and their soil controlling factors at two forests that had undergone conventional selective logging and reduced-impact logging in Cameroon. Each logging system had four replicate plots, each included the disturbed strata (road, logging deck, skidding trail, and felling gap) and an undisturbed reference area. Measurements were conducted monthly from September 2016 to October 2017. Annual GHG fluxes ranged from 4.9 to 18.6 Mg CO2–C, from 1.5 to 79 kg N2O–N, and from − 4.3 to 71.1 kg CH4–C ha−1 year−1. Compared to undisturbed areas, soil CO2 emissions were reduced and soil CH4 emissions increased in skidding trails, logging decks and roads (P 〈 0.01) whereas soil N2O emissions increased in skidding trails (P = 0.03–0.05). The combined disturbed strata had 28% decrease in soil CO2 emissions, 83% increase in soil N2O emissions, and seven times higher soil CH4 emissions compared to undisturbed area (P ≤ 0.01). However, the disturbed strata represented only 4–5% of the area impacted in both logging systems, which reduced considerably the changes in soil GHG fluxes at the landscape level. Across all strata, soil GHG fluxes were regulated by soil bulk density and water-filled pore space, indicating the influence of soil aeration and gas diffusion, and by soil organic carbon and nitrogen, suggesting the control of substrate availability on microbial processes of these GHG.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Description: Deutscher Akademischer Austauschdienst http://dx.doi.org/10.13039/501100001655
    Description: Georg-August-Universität Göttingen (1018)
    Description: https://doi.org/10.25625/TWSFRU
    Keywords: ddc:631.4 ; Ferralsols ; Selective logging ; Soil CH4 fluxes ; Soil CO2 emissions ; Soil N2O emissions ; Tropical forest
    Language: English
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  • 10
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    Origin and fate of dissolved organic matter in four shallow Baltic Sea estuaries (2020)
    Springer International Publishing
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    Publication Date: 2023-06-20
    Description: Coastal waters have strong gradients in dissolved organic matter (DOM) quantity and characteristics, originating from terrestrial inputs and autochthonous production. Enclosed seas with high freshwater input therefore experience high DOM concentrations and gradients from freshwater sources to more saline waters. The brackish Baltic Sea experiences such salinity gradients from east to west and from river mouths to the open sea. Furthermore, the catchment areas of the Baltic Sea are very diverse and vary from sparsely populated northern areas to densely populated southern zones. Coastal systems vary from enclosed or open bays, estuaries, fjords, archipelagos and lagoons where the residence time of DOM at these sites varies and may control the extent to which organic matter is biologically, chemically or physically modified or simply diluted with transport off-shore. Data of DOM with simultaneous measurements of dissolved organic (DO) nitrogen (N), carbon (C) and phosphorus (P) across a range of contrasting coastal systems are scarce. Here we present data from the Roskilde Fjord, Vistula and Öre estuaries and Curonian Lagoon; four coastal systems with large differences in salinity, nutrient concentrations, freshwater inflow and catchment characteristics. The C:N:P ratios of DOM of our data, despite high variability, show site specific significant differences resulting largely from differences residence time. Microbial processes seemed to have minor effects, and only in spring did uptake of DON in the Vistula and Öre estuaries take place and not at the other sites or seasons. Resuspension from sediments impacts bottom waters and the entire shallow water column in the Curonian Lagoon. Finally, our data combined with published data show that land use in the catchments seems to impact the DOC:DON and DOC:DOP ratios of the tributaries most.
    Description: Academy of Sciences of Finland
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Description: BONUS COCOA and Bundesministerium für Bildung und Forschung
    Description: Academy of Finland
    Description: Danish Research Council for Independent Research
    Description: BONUS COCOA Project
    Description: Leibniz-Institut für Ostseeforschung Warnemünde (IOW) (3484)
    Keywords: ddc:551.9 ; Coastal systems ; Dissolved organic matter ; Riverine input ; Baltic Sea
    Language: English
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  • 11
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    Efficient solution techniques for two-phase flow in heterogeneous porous media using exact Jacobians (2020)
    Springer International Publishing
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    Publication Date: 2023-06-12
    Description: Two efficient and scalable numerical solution methods will be compared using exact Jacobians to solve the fully coupled Newton systems arising during fully implicit discretization of the equations for two-phase flow in porous media. These methods use algebraic multigrid (AMG) to solve the linear systems in every Newton step. The algebraic multigrid methods rely on (i) a Schur Complement Reduction (SCR-AMG) and (ii) a Constrained Pressure Residual method (CPR-AMG) to decouple elliptic and hyperbolic contributions. Both methods employ automatic differentiation (AD) to calculate exact Jacobians and are compared with finite difference (FD) approximations of the Jacobian. The superiority of AD is shown by several numerical test cases from the field of CO2 geo-sequestration comprising two- and three-dimensional examples. A weak scaling test on JUQUEEN, a BlueGene/Q supercomputer, demonstrates the efficiency and scalability of both methods. To achieve maximum comparability and reproducibility, the Portable Extensible Toolkit for Scientific Computation (PETSc) is used as framework for the comparison of all solvers.
    Description: Horizon 2020 https://doi.org/10.13039/501100007601
    Description: Horizon 2020 https://doi.org/10.13039/501100007601
    Keywords: ddc:550.2 ; Algebraic multigrid (AMG) ; Schur complement reduction (SCR-AMG) ; Constrained pressure residual (CPR-AMG) ; Multiphase flow in porous media ; Automatic differentiation (AD) ; CO2 geo-sequestration ; 65F08 ; 65M55 ; 76T10
    Language: English
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  • 12
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    Multiphase-field modelling of crack propagation in geological materials and porous media with Drucker-Prager plasticity (2020)
    Späth, Michael ; Herrmann, Christoph ; Prajapati, Nishant ; [et al.]
    Springer International Publishing
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    Publication Date: 2023-06-12
    Description: A multiphase-field approach for elasto-plastic and anisotropic brittle crack propagation in geological systems consisting of different regions of brittle and ductile materials is presented and employed to computationally study crack propagation. Plastic deformation in elasto-plastic materials such as frictional, granular or porous materials is modelled with the pressure-sensitive Drucker-Prager plasticity model. This plasticity model is combined with a multiphase-field model fulfilling the mechanical jump conditions in diffuse solid-solid interfaces. The validity of the plasticity model with phase-inherent stress and strain fields is shown, in comparison with sharp interface finite element solutions. The proposed model is capable of simulating crack formation in heterogeneous multiphase systems comprising both purely elastic and inelastic phases. We investigate the influence of different material parameters on the crack propagation with tensile tests in single- and two-phase materials. To show the applicability of the model, crack propagation in a multiphase domain with brittle and elasto-plastic components is performed.
    Keywords: ddc:550.78 ; Multiphase-field ; Drucker-Prager plasticity ; Brittle fracture ; Elasto-plastic fracture
    Language: English
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  • 13
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    Geochemical focusing and sequestration of manganese during eutrophication of Lake Stechlin (NE Germany) (2020)
    Scholtysik, Grzegorz ; Dellwig, Olaf ; Roeser, Patricia ; [et al.]
    Springer International Publishing
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    Publication Date: 2023-06-17
    Description: Significant sedimentation of manganese (Mn) in form of manganese oxides (MnOx) and the subsequent formation of authigenic calcium-rich rhodochrosite (Mn(Ca)CO3) were observed in the seasonally stratified hard water Lake Stechlin in north-eastern Germany. This manganese enrichment was assumed to be associated with recent eutrophication of the formerly oligotrophic lake. The mechanisms and processes involved were examined by analysing: (i) short sediment cores obtained from seven locations along a depth transect ranging from 69.5 m (the deepest point) to 38 m; (ii) sediment traps located at 20 m and 60 m water depths; (iii) water column profiles; and (iv) porewater profiles at 69.5 m and 58 m depths. Sedimentary Mn enrichment was observed at water depths below 56 m and increased to more than 25 wt% at the deepest site. Between 2010 and 2017, Mn accumulation at the deepest site was 815 g Mn m−2. Transfer of Mn from the shallower towards the deepest parts of the lake was initiated by reductive dissolution of MnOx and diffusion of dissolved Mn from the sediment to the overlying water column. Manganese was then dissipated via turbulent mixing and subsequently oxidised to MnOx before being transported towards the deepest zone. Transformation of the redeposited MnOx to Mn(Ca)CO3 favoured the final burial of Mn. We show that eutrophication and the areal spreading of anoxic conditions may intensify diagenetic processes and cause the spatial redistribution of Mn as well as its effective burial. Contrary to many previous findings, we show that increases of Mn and Mn/Fe can also be used as indicators for increasing anoxic conditions in previously oligotrophic lakes.
    Description: Leibniz-Gemeinschaft http://dx.doi.org/10.13039/501100001664
    Description: Leibniz-Institut für Gewässerökologie und Binnenfischerei (IGB) im Forschungsverbund Berlin e.V. (3473)
    Keywords: ddc:551.9 ; Lacustrine sediments ; Geochemical focusing ; Eutrophication ; Diagenesis ; Rhodochrosite ; Varves
    Language: English
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  • 14
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    Global Radioxenon Emission Inventory from Nuclear Power Plants for the Calendar Year 2014 (2020)
    Springer International Publishing
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    Publication Date: 2023-10-26
    Description: For the purpose of monitoring for compliance with the Comprehensive Nuclear-Test-Ban Treaty (CTBT), the International Monitoring System (IMS) is being established that includes 40 sensor systems for atmospheric xenon radioactivity. Its purpose is to monitor the atmosphere for signatures that may indicate a nuclear explosion. Normal operational releases of radioxenon from nuclear facilities can regularly be observed by these very high-sensitive noble gas systems. Existing best estimates of releases for a generic year are unlikely to apply for any specific year at the level of individual facilities because their releases are highly variable and can change by several orders of magnitude from year to year. In this paper, best knowledge of the radioxenon emission inventory from nuclear power plants (NPPs) is collected for the calendar year 2014. The distribution function for each CTBT relevant radioxenon isotope is derived from all releases from NPPs as reported for 2014. The data of this paper can be used for developing and validating methods based on atmospheric transport modelling that are designed to enhance understanding of the impact of known sources on the IMS background observations.
    Description: Universität Hamburg (1037)
    Keywords: ddc:551.5 ; CTBT ; radioxenon ; emission inventory ; radionuclide monitoring ; atmospheric radioactivity
    Language: English
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  • 15
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    A Comprehensive Study of Infrasound Signals Detected from the Ingolstadt, Germany, Explosion of 1 September 2018 (2020)
    Springer International Publishing
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    Publication Date: 2023-11-23
    Description: The explosion at the Ingolstadt oil refinery was widely recorded at seismic and infrasound stations deployed throughout Central Europe, to distances of several hundred to a thousand kilometres. This study focuses on the wealth of data recorded at infrasound stations in Central and Eastern Europe, while from the many detecting seismic stations within 400 km range, only seismic and seismo-acoustic arrivals at the close-in Gräfenberg array are considered here. Most of the infrasound stations are acoustic arrays enabling us to apply array processing techniques to determine relevant wave field parameters, such as backazimuth and slowness (resp. trace velocity). These parameters not only confirm the source direction, but also put constraints on the observed arrivals’ propagation modes. Wave field parameters suggest that we observe tropospheric arrivals to about 150 km and stratospheric and/or thermospheric returns for longer distances. 1D, 2D and 3D ray tracing predict tropospheric arrivals to westerly directions up to distances of 100 km, beyond which only thermospheric returns are obtained azimuth-independent beyond 250–300 km. Stratospheric returns do not follow from any of the increasingly complex ray tracing models. Parabolic equation propagation modeling however suggests that in a number of cases stratospheric ducting may be possible. However, neither the tropospheric seismo-acoustic arrivals at the Gräfenberg array nor the various arrivals at IMS station IS26 could be modeled. Therefore, the Ingolstadt explosion along with the observed infrasonic phases provide an excellent test bed to investigate our ability in realistically forecasting atmospheric wave propagation with existing algorithms and available atmospheric models.
    Keywords: ddc:551.5 ; Infrasound ; explosion ; atmospheric models ; propagation modeling ; stratospheric ducting
    Language: English
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    Seismic and Aseismic Preparatory Processes Before Large Stick–Slip Failure (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-07-20
    Description: Natural earthquakes often have very few observable foreshocks which significantly complicates tracking potential preparatory processes. To better characterize expected preparatory processes before failures, we study stick-slip events in a series of triaxial compression tests on faulted Westerly granite samples. We focus on the influence of fault roughness on the duration and magnitude of recordable precursors before large stick–slip failure. Rupture preparation in the experiments is detectable over long time scales and involves acoustic emission (AE) and aseismic deformation events. Preparatory fault slip is found to be accelerating during the entire pre-failure loading period, and is accompanied by increasing AE rates punctuated by distinct activity spikes associated with large slip events. Damage evolution across the fault zones and surrounding wall rocks is manifested by precursory decrease of seismic b-values and spatial correlation dimensions. Peaks in spatial event correlation suggest that large slip initiation occurs by failure of multiple asperities. Shear strain estimated from AE data represents only a small fraction (〈 1%) of total shear strain accumulated during the preparation phase, implying that most precursory deformation is aseismic. The relative contribution of aseismic deformation is amplified by larger fault roughness. Similarly, seismic coupling is larger for smooth saw-cut faults compared to rough faults. The laboratory observations point towards a long-lasting and continuous preparation process leading to failure and large seismic events. The strain partitioning between aseismic and observable seismic signatures depends on fault structure and instrument resolution.
    Description: Helmholtz-Zentrum Potsdam - Deutsches GeoForschungsZentrum GFZ http://dx.doi.org/10.13039/501100010956
    Description: Helmholtz-Zentrum Potsdam Deutsches GeoForschungsZentrum - GFZ (4217)
    Keywords: ddc:551.22 ; Earthquakes ; rupture ; stick–slip tests ; seismic ; aseismic
    Language: English
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  • 17
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    Vicia sativa Roth. Can Reduce Soil and Water Losses in Recently Planted Vineyards (Vitis vinifera L.) (2020)
    Rodrigo-Comino, Jesús ; Terol, Enric ; Mora, Gaspar ; [et al.]
    Springer International Publishing
    Details
    Publication Date: 2023-06-08
    Description: Elevated soil loss and runoff rates can reduce soil fertility; therefore, soil erosion control strategies must be implemented at the hillslope and watershed scale when plantations are established and the soil is bare. In this research, we propose the use of the Vicia sativa Roth. to reduce the soil losses during the first year to control the peak of soil erosion after the plantation in tilled vineyards. To test its efficiency, rainfall simulation experiments were carried out with field surveys in The Casa Pago Gran, in the Eastern Iberian Peninsula. Our results demonstrate that soil properties (organic matter and soil bulk density) and soil erosion (soil loss, runoff and sediment concentration) were significantly different between the control plot (tilled) and with cover crops along with August 2016, 2017 and 2018 measurement periods, but not during January 2016, coinciding with the initial survey before the vetch sown. Runoff initiation was delayed in 3.7 times after 3 years (from 190 till 709 s). The runoff discharge was reduced by the Vicia sativa from 32.87 till 13.68%, the sediment concentration went down from 18.54 till 3.81 gr l−1 and the soil erosion from 3.36 to 0.29 Mg ha−1 year−1. An increase in soil bulk density was registered but did not affect the runoff generation either the soil losses, that was reduced by the plant cover. We conclude that it is necessary to include soil erosion control measures such as the use of Vicia sativa to reduce soil erosion processes during the first stages of the vineyard plantations due to the soil quality improvements and the reduction in soil and water losses.
    Description: European Union Seventh Framework Programme (FP7/2007-2013)
    Description: OECD (Biological Resource Management for Sustainable Agricultural Systems)
    Description: Universität Trier (3163)
    Keywords: ddc:631.4 ; Soil erosion ; Vineyards ; Soil management system ; Land degradation
    Language: English
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  • 18
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    Innovative Approaches, Tools and Visualization Techniques for Analysing Land Use Structures and Dynamics of Cities and Regions (Editorial) (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-08
    Description: Geospatial analysis and visualisation can be used to gain knowledge about land use structure and its changes on different spatial scales, which in turn is key to unlock the potential for sustainable land use development. This editorial provides a frame to a set of papers of the topical collection “Innovative approaches, tools and visualization techniques for analyzing land use structures and dynamics of cities and regions”, which was initiated in conjunction with the 2017 International Land Use Symposium taken place in Dresden, Germany. It first introduces current, urging land use, development and management challenges. Further on, the editorial presents the individual contributions and reflects their affiliation to the themes “Mapping and Monitoring Approaches” and “Planning, Decision Support and Participation”. Although the objectives, methods and underlying data used in the papers of this topical collection greatly vary, as pieces of a puzzle they contribute to a better analysis and understanding of current and future land use structures and dynamics of cities and regions.
    Description: Leibniz-Institut für ökologische Raumentwicklung e.V. (3483)
    Keywords: ddc:910 ; Land use structures ; Spatial planning ; Urban development ; Urban dynamics ; Decision support ; Monitoring ; Mapping
    Language: English
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  • 19
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    Mediate relation between electrical and thermal conductivity of soil (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-08
    Description: Thermal conductivity is a key parameter for many soil applications, especially for dimensioning shallow and very shallow geothermal systems based on the possible heat extraction rate and for modelling heat transfer processes around high voltage underground cables. Due to the limited purview of direct thermal conductivity measurements, for an investigation of extensive areas, usually other geophysical methods like electrical resistivity tomography measurements are applied. To derive thermal conductivity of soil from geoelectrical measurements a relation between electrical and thermal conductivity is needed. Until now only few approaches worked on a direct correlation between both conductivities. Due to the difficulties of a direct relation, within this study a modular approach of a mediate correlation between electrical and thermal conductivity was investigated. Therefore, a direct relationship between a corrected electrical conductivity and water content as well as the standard and simple thermal conductivity model of Kersten (Bull of the Univ Minnesota 28:1–227, 1949) was used. To develop this concept soil types of sand, silt loam and clay were investigated where different saturation steps and pressure loads were applied. For each configuration electrical and thermal conductivity as well as water content and bulk density was determined. To refine the results of the calculated water content a corrective factor was applied. Furthermore, bulk density as an inlet parameter of the Kersten equation was also derived based on electrical conductivity. The suggested proceeding enables the determination of thermal conductivity solely based on electrical conductivity without prior soil property information.
    Description: Bundesministerium für Wirtschaft und Technologie http://dx.doi.org/10.13039/501100002765
    Keywords: ddc:622.154 ; ERT ; Heat transfer ; Kersten model ; Water content ; Bulk density
    Language: English
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  • 20
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    The 1994 Piedmont flood: an archetype of extreme precipitation events in Northern Italy (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-08
    Description: Extreme precipitation events (EPEs) are meteorological phenomena of major concern for the densely populated regions of northern and central Italy. Although statistically rare, they tend to be recurrent in autumn and share common characteristics in the large-scale dynamical evolution responsible for their generation. Past studies on EPEs have reported, as the main triggering factor, a meridionally elongated upper-level trough embedded in an incoming Rossby wave packet. In this respect, we show how the meteorological conditions leading to the devastating 1994 Piedmont flood represent a typical flow evolution for this type of extreme events. Exploiting the systematic classification of EPEs recently published by the authors and taking advantage of a new observational dataset, this article revisits the role of the large-scale flow on this and similar cases of past EPEs.
    Description: Ludwig-Maximilians-Universität, Meteorologisches Institut, München, Germany
    Keywords: ddc:551 ; Extreme precipitation ; Floods ; Po river ; Atmospheric rivers ; Rossby wave packets ; Downstream development
    Language: English
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  • 21
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    In situ sounding of radiative flux profiles through the Arctic lower troposphere (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-05
    Description: In situ profiles and fixed-altitude time series of all four components of net radiation were obtained at Ny-Ålesund, Svalbard (78.9° N, 11.9° E), in the period May 04–21, 2015. Measurements were performed using adapted high-quality instrumentation classified as “secondary standard” carried by a tethered balloon system. Balloon-lifted measurements of albedo under clear-sky conditions demonstrate the local dependence on altitude and on the surface inhomogeneity of this parameter over coastal terrain of Ny-Ålesund. Depending on the surface composition within the sensor’s footprint near the coastline, the albedo over predominantly snow-covered surfaces was found to decrease to 0.548 and 0.452 at 494 m and 881 m altitude compared with 0.731 and 0.788 measured with near-surface references, respectively. Albedo profiles show an all-sky maximum at 150 m above surface level due to local surface inhomogeneity, and an averaged vertical change rate of − 0.040/100 up to 750 m aboveground level (clear sky) and − 0.034/100 m (overcast). Profiling of arctic low-level clouds reveals distinct vertical gradients in all radiative fluxes but longwave upward at the cloud top. Observed radiative cooling at the top of a partly dissolving stratus cloud with heating rates of − 40.4 to − 62.1 Kd−1 in subsequent observations is exemplified.
    Description: Bundesrepublik Deutschland, Deutscher Wetterdienst, vertreten durch den Vorstand, Deutsche Meteorologische Bibliothek (4242)
    Keywords: ddc:551.5 ; Atmosphere ; Arctic ; In-situ profiling ; Albedo ; Clouds ; Heating rates
    Language: English
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  • 22
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    The OGS-Eclipse code for simulation of coupled multiphase flow and geomechanical processes in the subsurface (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-09
    Description: This paper presents a numerical simulation tool for the analysis of coupled processes related to subsurface operations. The tool combines the open-source scientific code OpenGeoSys with the reservoir simulator Eclipse enabling the coupling of thermal, hydraulic, mechanical and geochemical processes. While the coupling of multiphase flow with heat and reactive geochemical component transport has been already implemented, OpenGeoSys-Eclipse is now extended for the coupling of multiphase flow and deformation. By this, OpenGeoSys-Eclipse is capable of addressing the impact of pore pressure changes on rock stability and deformation as well as the feedback effects of geomechanical processes on multiphase flow via pore volume coupling and porosity and permeability update. The coupling is verified by several test cases of gas storage scenarios and compared with reference simulations of OpenGeoSys. The results are in good agreement regarding the general effects of geomechanical feedback on pore pressure as well as porosity and permeability changes. Differences in the results are only observed for the pore volume coupling arising from the different implementation of rock compressibility models in the two simulators. The simulations are furthermore used to investigate the relevance of addressing geomechanical feedback in numerical scenario simulations for the assessment of subsurface operations. The results show clearly, that, depending on the given storage site conditions and rock types, the feedback of deformation on pore pressure can be significant and should therefore be accounted for in the assessment.
    Keywords: ddc:550.2 ; Numerical simulation ; Coupled hydromechanical processes ; Code development and verification ; OpenGeoSys-Eclipse
    Language: English
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  • 23
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    Validation and calibration of coupled porous-medium and free-flow problems using pore-scale resolved models (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-09
    Description: The correct choice of interface conditions and effective parameters for coupled macroscale free-flow and porous-medium models is crucial for a complete mathematical description of the problem under consideration and for accurate numerical simulation of applications. We consider single-fluid-phase systems described by the Stokes–Darcy model. Different sets of coupling conditions for this model are available. However, the choice of these conditions and effective model parameters is often arbitrary. We use large-scale lattice Boltzmann simulations to validate coupling conditions by comparison of the macroscale simulations against pore-scale resolved models. We analyse three settings (lid-driven cavity over a porous bed, infiltration problem and general filtration problem) with different geometrical configurations (channelised and staggered distributions of solid grains) and different sets of interface conditions. Effective parameters for the macroscale models (permeability tensor, boundary layer constants) are computed numerically for each geometrical configuration. Numerical simulation results demonstrate the sensitivity of the coupled Stokes–Darcy problem to the location of the sharp fluid–porous interface, the effective model parameters and the interface conditions.
    Description: Bundesministerium für Bildung und Forschung https://doi.org/10.13039/501100002347
    Description: Deutsche Forschungsgemeinschaft (DE)
    Description: Deutsche Forschungsgemeinschaft (DE)
    Description: Bundesministerium für Bildung und Forschung (DE)
    Keywords: ddc:550.2 ; Stokes equations ; Darcy’s law ; Interface conditions ; Lattice Boltzmann method
    Language: English
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  • 24
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    Modeling, simulation, and optimization of geothermal energy production from hot sedimentary aquifers (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-09
    Description: Geothermal district heating development has been gaining momentum in Europe with numerous deep geothermal installations and projects currently under development. With the increasing density of geothermal wells, questions related to the optimal and sustainable reservoir exploitation become more and more important. A quantitative understanding of the complex thermo-hydraulic interaction between tightly deployed geothermal wells in heterogeneous temperature and permeability fields is key for a maximum sustainable use of geothermal resources. Motivated by the geological settings of the Upper Jurassic aquifer in the Greater Munich region, we develop a computational model based on finite element analysis and gradient-free optimization to simulate groundwater flow and heat transport in hot sedimentary aquifers, and numerically investigate the optimal positioning and spacing of multi-well systems. Based on our numerical simulations, net energy production from deep geothermal reservoirs in sedimentary basins by smart geothermal multi-well arrangements provides significant amounts of energy to meet heat demand in highly urbanized regions. Our results show that taking into account heterogeneous permeability structures and a variable reservoir temperature may drastically affect the results in the optimal configuration. We demonstrate that the proposed numerical framework is able to efficiently handle generic geometrical and geological configurations, and can be thus flexibly used in the context of multi-variable optimization problems. Hence, this numerical framework can be used to assess the extractable geothermal energy from heterogeneous deep geothermal reservoirs by the optimized deployment of smart multi-well systems.
    Description: Leibniz-Gemeinschaft https://doi.org/10.13039/501100001664
    Keywords: ddc:550.2 ; Porous and fractured geothermal reservoir modeling ; Geothermal multi-well configurations ; Finite element method ; Thermo-hydraulic coupling ; Optimization ; Open-source software
    Language: English
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  • 25
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    Accuracy of fully coupled and sequential approaches for modeling hydro- and geomechanical processes (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-06-09
    Description: Subsurface flow and geomechanics are often modeled with sequential approaches. This can be computationally beneficial compared with fully coupled schemes, while it requires usually compromises in numerical accuracy, at least when the sequential scheme is non-iterative. We discuss the influence of the choice of scheme on the numerical accuracy and the expected computational effort based on a comparison of a fully coupled scheme, a scheme employing a one-way coupling, and an iterative scheme using a fixed-stress split for two subsurface injection scenarios. All these schemes were implemented in the numerical simulator DuMux. This study identifies conditions of problem settings where differences due to the choice of the model approach are as important as differences in geologic features. It is shown that in particular transient and multiphase flow, effects can be causing significant deviations between non-iterative and iterative sequential schemes, which might be in the same order of magnitude as geologic uncertainty. An iterated fixed-stress split has the same numerical accuracy as a fully coupled scheme but only for a certain number of iterations which might use up the computational advantage of solving two smaller systems of equations rather than a big monolithical one.
    Description: Deutsche Forschungsgemeinschaft https://doi.org/10.13039/501100001659
    Description: H2020 European Research Council https://doi.org/10.13039/100010663
    Keywords: ddc:550.2 ; Flow and geomechanics ; Fully coupled and sequential schemes ; Fixed-stress scheme ; Numerical accuracy ; Geologic uncertainty
    Language: English
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  • 26
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    Brittle anisotropic fracture propagation in quartz sandstone: insights from phase-field simulations (2020)
    Prajapati, Nishant ; Herrmann, Christoph ; Späth, Michael ; [et al.]
    Springer International Publishing
    Details
    Publication Date: 2023-06-09
    Description: We developed a generalized multiphase-field modeling framework for addressing the problem of brittle fracture propagation in quartz sandstones at microscopic length scale. Within this numerical approach, the grain boundaries and crack surfaces are modeled as diffuse interfaces. The two novel aspects of the model are the formulations of (I) anisotropic crack resistance in order to account for preferential cleavage planes within each randomly oriented quartz grain and (II) reduced interfacial crack resistance for incorporating lower fracture toughness along the grain boundaries that might result in intergranular crack propagation. The presented model is capable of simulating the competition between inter- and transgranular modes of fracturing based on the nature of grain boundaries, while exhibiting preferred fracturing directions within each grain. In the full parameter space, the model can serve as a powerful tool to investigate the complicated fracturing processes in heterogeneous polycrystalline rocks comprising of grains of distinct elastic properties, cleavage planes, and grain boundary attributes. We demonstrate the performance of the model through the representative numerical examples.
    Description: Helmholtz-Gemeinschaft https://doi.org/10.13039/501100001656
    Description: Deutsche Forschungsgemeinschaft https://doi.org/10.13039/501100001659
    Description: Ministry of Baden-Wuerttemberg
    Keywords: ddc:550.2 ; Brittle fracture ; Phase-field modeling ; Multiphase systems ; Quartz sandstone ; Anisotropic crack resistance ; Interfacial crack resistance
    Language: English
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  • 27
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    Vibrio and Bacterial Communities Across a Pollution Gradient in the Bay of Bengal: Unraveling Their Biogeochemical Drivers (2020)
    Frontiers
    In:  EPIC3Frontiers in Microbiology, Frontiers, 11, pp. 1-16, ISSN: 1664-302X
    Details
    Publication Date: 2023-06-21
    Description: The highly populated coasts of the Bay of Bengal are particularly vulnerable to water-borne diseases, pollution and climatic extremes. The environmental factors behind bacterial community composition and Vibrio distribution were investigated in an estuarine system of a cholera-endemic region in the coastline of Bangladesh. Higher temperatures and sewage pollution were important drivers of the abundance of toxigenic Vibrio cholerae. A closer relation between non-culturable Vibrio and particulate organic matter (POM) was inferred during the post-monsoon. The distribution of operational taxonomic units (OTUs) of Vibrio genus was likely driven by salinity and temperature. The resuspension of sediments increased Vibrio abundance and organic nutrient concentrations. The d13C dynamic in POM followed an increasing gradient from freshwater to marine stations; nevertheless, it was not a marker of sewage pollution. Bacteroidales and culturable coliforms were reliable indicators of untreated wastewater during pre and post-monsoon seasons. The presumptive incorporation of depletedammonium derived from ammonification processes under the hypoxic conditions, by some microorganisms such as Cloacibacterium and particularly by Arcobacter nearby the sewage discharge, contributed to the drastic 15N depletion in the POM. The likely capacity of extracellular polymeric substances production of these taxa may facilitate the colonization of POM from anthropogenic origin and may signify important properties for wastewater bioremediation. Genera of potential pathogens other than Vibrio associated with sewage pollution were Acinetobacter, Aeromonas, Arcobacter, and Bergeyella. The changing environmental conditions of the estuary favored the abundance of early colonizers and the island biogeography theory explained the distribution of some bacterial groups. This multidisciplinary study evidenced clearly the eutrophic conditions of the Karnaphuli estuary and assessed comprehensively its current bacterial baseline and potential risks. The prevailing conditions together with human overpopulation and frequent natural disasters, transform the region in one of the most vulnerable to climate change. Adaptive management strategies are urgently needed to enhance ecosystem health.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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    The 12 December 2017 Baumgarten Gas Hub Explosion: A Case Study on Understanding the Occurrence of a Large Infrasound Azimuth Residual and a Lack of Seismic Observations (2020)
    Springer International Publishing
    Details
    Publication Date: 2023-11-27
    Description: The Baumgarten explosion occurred on 12 December 2017 at a gas storage site about 30 km east of Vienna, Austria. Acoustic arrivals from this accidental surface explosion were detected at dozens of stations of the AlpArray seismic network to distances up to 150 km, mainly in easterly directions. Thus it was expected that the Hungarian infrasound array PSZI located about 230 km to the east-southeast of Baumgarten would detect this acoustic wave as well. Standard progressive multichannel correlation processing and frequency-wavenumber analysis identified a signal emerging at 7:57:55 UTC from an azimuth of 296°–300° and with trace-velocity 〉 400 m/s. The extraordinarily high trace-velocity and excessive backazimuth residual, relative to the explosion site direction of 282°, however cast strong doubts on the arrival’s connection to the Baumgarten event. Accounting for the effect of non-planar geometry of the infrasound array results in a reduction of the azimuth residual by half. Additionally, 2D and 3D raytracing methods are used including the European Centre for Medium-Range Weather Forecasts (ECMWF) atmospheric model to further explain the remaining azimuth residual as well as to elucidate the large trace velocity estimates. The prevailing stratospheric winds in excess of 150 m/s are identified as the underlying cause. Including both factors the initial azimuth residual of up to 18° decreases to ~ 4°, allowing to associate the infrasound signal at PSZI with the Baumgarten event. Finally, the data from a seismic station at 30 km range is re-investigated for magnitude estimation. The local magnitude of ML 〈 1.0 explains well the scarcity of seismic observations within 50 km range, where three or four stations show signals, mainly consisting of Rg-type surface waves, but no body waves.
    Description: https://www.geofon.gfz-potsdam.de/doi/network/HN
    Description: https://doi.org/10.14470/UA114590
    Description: https://www.geofon.gfz-potsdam.de/doi/network/SK
    Description: https://www.ecmwf.int/
    Description: https://www.github.com/LANL-Seismoacoustics/GeoAc
    Keywords: ddc:551 ; Infrasound ; Baumgarten explosion ; array data processing ; backazimuth residual ; atmospheric sound propagation ; detection threshold
    Language: English
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  • 29
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    Biological Clocks and Rhythms in Polar Organisms (2020)
    Springer International Publishing
    In:  EPIC3Springer International Publishing, 4, pp. 217-240, ISBN: 9783030332075
    Details
    Publication Date: 2024-05-13
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 30
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    Broad Thermal Tolerance in the Cold-Water Coral Lophelia pertusa From Arctic and Boreal Reefs (2020)
    Frontiers
    Details
    Publication Date: 2023-02-08
    Description: Along the Norwegian coasts and margins, extensive reefs of the stony coral Lophelia pertusa act as hotspots for local biodiversity. Climate models project that the temperature of Atlantic deep waters could rise by 1–3°C by 2100. In this context, understanding the effects of temperature on the physiology of cold-water species will help in evaluating their resilience to future oceanic changes. We investigated the response of L. pertusa to stepwise short-term increases in temperature. We sampled corals from four reefs, two located north of the Arctic circle and two at the mid-Norwegian shelf (boreal). In on-board experiments (one per reef), the sampled fragments were exposed to increasing temperatures from 5 to 15°C over 58 h. Respiration increased linearly by threefold for a 10°C increase. The short-term temperature increase did not induce mortality, cellular (neutral red assay for lysosome membrane stability; but one exception) or oxidative stress (lipid peroxidation assay) – to a few exceptions. However, the variability of the respiration responses depended on the experiment (i.e., reef location), possibly linked to the genetic structure of the individuals that we sampled (e.g., clones or siblings). The corals from the Arctic and boreal regions appear to have a high tolerance to the rapid temperature fluctuations they experience in the field. Over extended periods of time however, an increased metabolism could deplete the energy stored by the corals, if not met by an increased food availability and/or uptake. Empirical data on organisms’ thermal performance curves, such as the one presented in this study for L. pertusa, will be useful to implement predictive models on the responses of species and populations to climate change.
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    Behavioral Biomarkers for Animal Health: A Case Study Using Animal-Attached Technology on Loggerhead Turtles (2020)
    Frontiers
    Details
    Publication Date: 2023-02-08
    Description: Vertebrates are recognized as sentient beings. Consequently, urgent priority is now being given to understanding the needs and maximizing the welfare of animals under human care. The general health of animals is most commonly determined by physiological indices e.g., blood sampling, but may also be assessed by documenting behavior. Physiological health assessments, although powerful, may be stressful for animals, time-consuming and costly, while assessments of behavior can also be time-consuming, subject to bias and suffer from a poorly defined link between behavior and health. However, behavior is recognized as having the potential to code for stress and well-being and could, therefore, be used as an indicator of health, particularly if the process of quantifying behavior could be objective, formalized and streamlined to be time efficient. This study used Daily Diaries (DDs) (motion-sensitive tags containing tri-axial accelerometers and magnetometers), to examine aspects of the behavior of bycaught loggerhead turtles, Caretta caretta in various states of health. Although sample size limited statistical analysis, significant behavioral differences (in terms of activity level and turn rate) were found between “healthy” turtles and those with external injuries to the flippers and carapace. Furthermore, data visualization (spherical plots) clearly showed atypical orientation behavior in individuals suffering gas emboli and intestinal gas, without complex data analysis. Consequently, we propose that the use of motion-sensitive tags could aid diagnosis and inform follow-up treatment, thus facilitating the rehabilitation process. This is particularly relevant given the numerous rehabilitation programs for bycatch sea turtles in operation. In time, tag-derived behavioral biomarkers, TDBBs for health could be established for other species with more complex behavioral repertoires such as cetaceans and pinnipeds which also require rehabilitation and release. Furthermore, motion-sensitive data from animals under human care and wild conspecifics could be compared in order to define a set of objective behavioral states (including activity levels) for numerous species housed in zoos and aquaria and/or wild species to help maximize their welfare.
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  • 32
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    Food Quantity and Quality Interactions at Phytoplankton–Zooplankton Interface: Chemical and Reproductive Responses in a Calanoid Copepod (2020)
    Frontiers
    Details
    Publication Date: 2023-02-08
    Description: Marine food webs form the major component of the biological pump and play a central role in the global carbon (C) cycle. Understanding the response of particular processes in marine food webs to changing environments is a prerequisite to predict changes in ecological functioning in the future ocean. Here, we experimentally assessed the effects of nitrogen:phosphorus (N:P) supply ratios (the molar ratios 10:1, 24:1, and 63:1) on elemental and biochemical quality of marine phytoplankton Rhodomonas sp., and the interactions between food quantity and quality on stoichiometric C:N:P, fatty acids (FAs) and reproductions in copepods Acartia tonsa. Overall, the stoichiometry of A. tonsa was to some extent homeostatic in response to the changing algal C:N and C:P ratios, with significant changes in C:N ratios of A. tonsa observed, especially under higher food quantities. The relative gross growth efficiencies (GGEs) for C and N (and P) were analyzed, revealing that copepods may achieve homeostasis by lowering the GGE for C while increasing it for the limiting nutrient. Egg production rates in A. tonsa were lowest on nutrient deficient diets under low food quantities. Reduced egg production rates may be attributed to the lowered GGEs for C and reduced transfer efficiency of essential FAs between phytoplankton and copepods, indicating interactive-essential effects of elements and FAs on copepod production. Our results highlight that nutrient deficiency in the environments may reduce energy transfer efficiency at the base of food webs by altering phytoplankton chemical composition, which can interact with food quantity and have implications on food web dynamics in the changing ocean.
    Type: Article , PeerReviewed
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  • 33
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    Metabolic Responses of Subtropical Microplankton After a Simulated Deep-Water Upwelling Event Suggest a Possible Dominance of Mixotrophy Under Increasing CO2 Levels (2020)
    Frontiers
    Details
    Publication Date: 2023-02-08
    Description: In the autumn of 2014, nine large mesocosms were deployed in the oligotrophic subtropical North-Atlantic coastal waters off Gran Canaria (Spain). Their deployment was designed to address the acidification effects of CO2 levels from 400 to 1,400 mu atm, on a plankton community experiencing upwelling of nutrient-rich deep water. Among other parameters, chlorophyll a (chl-a), potential respiration (Phi), and biomass in terms of particulate protein (B) were measured in the microplankton community (0.7-50.0 mu m) during an oligotrophic phase (Phase I), a phytoplankton-bloom phase (Phase II), and a post-bloom phase (Phase III). Here, we explore the use of the Phi/chl-a ratio in monitoring shifts in the microplankton community composition and its metabolism. Phi/chl-a values below 2.5 mu L O-2 h(-1) (mu g chl-a)(-1) indicated a community dominated by photoautotrophs. When Phi/chl-a ranged higher, between 2.5 and 7.0 mu L O-2 h(-1) (pg chl-a)(-1) , it indicated a mixed community of phytoplankton, microzooplankton and heterotrophic prokaryotes. When Phi/chl-a rose above 7.0 mu L O-2 h(-1) (mu g chl-a)(-1), it indicated a community where microzooplankton proliferated (〉10.0 mu L O-2 h(-1) (mu g chl-a)(-1)), because heterotrophic dinoflagellates bloomed. The first derivative of B, as a function of time (dB/dt), indicates the rate of protein build-up when positive and the rate of protein loss, when negative. It revealed that the maximum increase in particulate protein (biomass) occurred between 1 and 2 days before the chl-a peak. A day after this peak, the trough revealed the maximum net biomass loss. This analysis did not detect significant changes in particulate protein, neither in Phase I nor in Phase III. Integral analysis of Phi/chl-a and B, over the duration of each phase, for each mesocosm, reflected a positive relationship between 4) and pCO(2) during Phase II [alpha = 230.10-5 mu L O-2 h(-1) L-1 (patm CO2)(-1) (phase-day)(-1), R-2 = 0.30] and between chl-a and pCO(2) during Phase III [alpha = 100.10(-5) Ag chl-a L-1 (mu atmCO(2))(-1) (phase-day)(-1), R-2 = 0.84]. At the end of Phase II, a harmful algal species (HAS), Vicicitus globosus, bloomed in the high pCO(2) mesocosms. In these mesocosms, microzooplankton did not proliferate, and chl-a retention time in the water column increased. In these V globosus-disrupted communities, the (Phi/chl-a ratio [4.1 +/- 1.5 /mu L O-2 h(-1) (mu g chl-a)(-1)] was more similar to the Phi/chl-a ratio in a mixed plankton community than to a photoautotroph-dominated one.
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    Warming, but Not Acidification, Restructures Epibacterial Communities of the Baltic Macroalga Fucus vesiculosus With Seasonal Variability (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Due to ocean acidification and global warming, surface seawater of the western Baltic Sea is expected to reach an average of ∼1100 μatm pCO2 and an increase of ∼5°C by the year 2100. In four consecutive experiments (spanning 10–11 weeks each) in all seasons within 1 year, the abiotic factors temperature (+5°C above in situ) and pCO2 (adjusted to ∼1100 μatm) were tested for their single and combined effects on epibacterial communities of the brown macroalga Fucus vesiculosus and on bacteria present in the surrounding seawater. The experiments were set up in three biological replicates using the Kiel Outdoor Benthocosm facility (Kiel, Germany). Phylogenetic analyses of the respective microbiota were performed by bacterial 16S (V1-V2) rDNA Illumina MiSeq amplicon sequencing after 0, 4, 8, and 10/11 weeks per season. The results demonstrate (I) that the bacterial community composition varied in time and (II) that relationships between operational taxonomic units (OTUs) within an OTU association network were mainly governed by the habitat. (III) Neither single pCO2 nor pCO2:Temperature interaction effects were statistically significant. However, significant impact of ocean warming was detected varying among seasons. (IV) An indicator OTU (iOTU) analysis identified several iOTUs that were strongly influenced by temperature in spring, summer, and winter. In the warming treatments of these three seasons, we observed decreasing numbers of bacteria that are commonly associated with a healthy marine microbial community and—particularly during spring and summer—an increase in potentially pathogenic and bacteria related to intensified microfouling. This might lead to severe consequences for the F. vesiculosus holobiont finally affecting the marine ecosystem.
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    A First Global Oceanic Compilation of Observational Dissolved Aluminum Data With Regional Statistical Data Treatment (2020)
    Frontiers
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    Publication Date: 2023-02-08
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    On the Variability of Stratification in the Freshwater-Influenced Laptev Sea Region (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: In this paper, we investigate the seasonal and spatial variability of stratification on the Siberian shelves with a case study from the Laptev Sea based on shipboard hydrographic measurements, year-round oceanographic mooring records from 2013 to 2014 and chemical tracer-based water mass analyses. In summer 2013, weak onshore-directed winds caused spreading of riverine waters throughout much of the eastern and central shelf. In contrast, strong southerly winds in summer 2014 diverted much of the freshwater to the northeast, which resulted in 50% less river water and significantly weaker stratification on the central shelf compared with the previous year. Our year-long records additionally emphasize the regional differences in water column structure and stratification, where the northwest location was well-mixed for 6 months and the central and northeast locations remained stratified into spring due to the lower initial surface salinities of the river-influenced water. A 26 year record of ocean reanalysis highlights the region’s interannual variability of stratification and its dependence on winds and sea ice. Prior the mid-2000s, river runoff to the perennially ice-covered central Laptev Sea shelf experienced little surface forcing and river water was maintained on the shelf. The transition toward less summer sea ice after the mid-2000s increased the ROFI’s (region of freshwater influence) exposure to summer winds. This greatly enhanced the variability in mixed layer depth, resulting in several years with well-mixed water columns as opposed to the often year-round shallow mixed layers before. The extent of the Lena River plume is critical for the region since it modulates nutrient fluxes and primary production, and further controls intermediate heat storage induced by lateral density gradients, which has implications for autumnal freeze-up and the eastern Arctic sea ice volume. MAIN POINTS 1. CTD surveys and moorings highlight the regional and temporal variations in water column stratification on the Laptev Sea shelf. 2. Summer winds increasingly control the extent of the region of freshwater influence under decreasing sea ice. 3. Further reductions in sea ice increases surface warming, heat storage, and the interannual variability in mixed layer depth.
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    Multi-Layered High Permeability Conduits Connecting Onshore and Offshore Coastal Aquifers (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Groundwater resources in coastal regions are facing enormous pressure caused by population growth and climate change. Few studies have investigated whether offshore freshened groundwater systems are connected with terrestrial aquifers recharged by meteoric water, or paleo-groundwater systems that are no longer associated with terrestrial aquifers. Distinguishing between the two has important implications for potential extraction to alleviate water stress for many coastal communities, yet very little is known about these connections, mainly because it is difficult to acquire continuous subsurface information across the coastal transition zone. This study presents a first attempt to bridge this gap by combining three complementary near-surface electromagnetic methods to image groundwater pathways within braided alluvial gravels along the Canterbury coast, South Island, New Zealand. We show that collocated electromagnetic induction, ground penetrating radar, and transient electromagnetic measurements, which are sensitive to electrical contrasts between fresh (low conductivity) and saline (high conductivity) groundwater, adequately characterize hydrogeologic variations beneath a mixed sand gravel beach in close proximity to the Ashburton River mouth. The combined measurements – providing information at three different depths of investigation and resolution – show several conductive zones that are correlated with spatial variations in subsurface hydrogeology. We interpret the conductive zones as high permeability conduits corresponding to lenses of well-sorted gravels and secondary channel fill deposits within the braided river deposit architecture. The geophysical surveys provide the basis for a discharge model that fits our observations, namely that there is evidence of a multilayered system focusing groundwater flow through stacked high permeability gravel layers analogous to a subterranean river network. Coincident geophysical surveys in a region further offshore indicate the presence of a large, newly discovered freshened groundwater system, suggesting that the offshore system in the Canterbury Bight is connected with the terrestrial aquifer system.
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    GO-SHIP Repeat Hydrography Nutrient Manual: The Precise and Accurate Determination of Dissolved Inorganic Nutrients in Seawater, Using Continuous Flow Analysis Methods (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The GO-SHIP nutrient manual covers all aspects of nutrient analysis from basic sample collection and storage, specifically for Continuous Flow analysis using an Auto-Analyzer, and describes some specific nutrient methods for Nitrate, Nitrite, Silicate, Phosphate and Ammonium that are in use by many laboratories carrying out at-sea analysis and repeat hydrography sections across the world. The focus is on segmented flow analyzers not flow injection analyzers. It also covers laboratory best practices including quality control and quality assurance (QC/QA) procedures to obtain the best results, and suggests protocols for the use of reference materials (RM) and certified reference materials (CRMs).
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    Optical Properties and Photochemical Transformation of the Dissolved Organic Matter Released by Sargassum (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Chromophoric dissolved organic matter (CDOM) is the dominant absorber of ultraviolet radiation in the ocean, but its sources within the ocean, as well as its chemical composition, remain uncertain. One source of marine CDOM is Sargassum, an epipelagic marine macro brown alga common to the Gulf of Mexico, Caribbean, and Western North Atlantic. Furthermore, Sargassum contains phlorotannins, a class of polyphenols that may have similar optical properties to terrestrial polyphenols. Here, we analyze Sargassum CDOM optical properties, acquired from absorption and fluorescence spectra of filtered samples collected during Sargassum exudation experiments in seawater tanks. To further evaluate the structural basis of Sargassum CDOM optical properties, Sargassum CDOM was collected by solid phase extraction (SPE) and its chemical composition was tested by pH titration and sodium borohydride reduction. These chemical tests revealed that Sargassum CDOM absorption spectra respond similarly to pH titration and borohydride reduction when compared to terrestrially-derived materials, but Sargassum CDOM has unique absorbance peaks in difference spectra that have not been observed in terrestrially-derived CDOM. These absorbance features are consistent with the deprotonation of modified Sargassum phlorotannins, which are likely highly related phenolic acids and polyphenols. Sargassum CDOM was also more rapidly photodegraded when compared to terrestrial CDOM such as Suwannee River Natural Organic Matter. Similar to terrestrial DOM, ultrahigh resolution mass spectrometry revealed that sunlight decreases relative abundances of m/z ions and molecular formulas with an average O/C ratio of 0.6 and an average H/C ratio of 0.9, suggesting preferential photodegradation and/or phototransformation of hydrogen-deficient and oxygenated compounds, such as Sargassum phlorotannins. Assuming a large fraction of Sargassum CDOM is quickly mineralized to CO2 during its rapid photodegradation, Sargassum could play a major role in marine photochemical carbon mineralization during its annual growth cycle
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    Tidal dynamics control on cold-water coral growth: A high-resolution multivariable study on eastern Atlantic cold-water coral sites (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Cold-water coral communities form complex benthic ecosystems in a distinct part of the water column. The exact processes supporting reef growth and changes with time are still partly unsolved. Recent studies have suggested a tidally driven hydraulic control of flow over topographic features as a driver for local downwelling at cold-water coral sites. This mechanism forms a link between surface and coral growth depths and is a driver of resuspension of the bottom material. Only few studies have concentrated on how these processes vary with the health status and structure of the cold-water coral occurrences. In this study, we explore the processes over tidal cycles by analysing in situ stratification, hydrography and velocity data which we then combine with local topography from seven Lophelia pertusa dominated eastern Atlantic cold-water coral sites. The “quality” of coral sites varies from thriving reefs to declining and dead coral sites. We show that living and healthy corals are concentrated at sites, where local hydrodynamics create overturning and mixing which support food supply for filter-feeding corals.
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    Hydrothermal Activity and Seismicity at Teahitia Seamount: Reactivation of the Society Islands Hotspot? (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Along mid-ocean ridges, submarine venting has been found at all spreading rates and in every ocean basin. By contrast, intraplate hydrothermal activity has only been reported from five locations, worldwide. Here we extend the time series at one of those sites, Teahitia Seamount, which was first shown to be hydrothermally active in 1983 but had not been revisited since 1999. Previously, submersible investigations had led to the discovery of low-temperature (≤30°C) venting associated with the summit of Teahitia Seamount at ≤1500 m. In December 2013 we returned to the same site at the culmination of the US GEOTRACES Eastern South Tropical Pacific (GP16) transect and found evidence for ongoing venting in the form of a non-buoyant hydrothermal plume at a depth of 1400 m. Multi-beam mapping revealed the same composite volcano morphology described previously for Teahitia including four prominent cones. The plume overlying the summit showed distinct in situ optical backscatter and redox anomalies, coupled with high concentrations of total dissolvable Fe (≤186 nmol/L) and Mn (≤33 nmol/L) that are all diagnostic of venting at the underlying seafloor. Continuous seismic records from 1986-present reveal a ∼15 year period of quiescence at Teahitia, following the seismic crisis that first stimulated its submersible-led investigation. Since 2007, however, the frequency of seismicity at Teahitia, coupled with the low magnitude of those events, are suggestive of magmatic reactivation. Separately, distinct seismicity at the adjacent Rocard seamount has also been attributed to submarine extrusive volcanism in 2011 and in 2013. Theoretical modeling of the hydrothermal plume signals detected suggest a minimum heat flux of 10 MW at the summit of Teahitia. Those model simulations can only be sourced from an area of low-temperature venting such as that originally reported from Teahitia if the temperature of the fluids exiting the seabed has increased significantly, from ≤30°C to ∼70°C. These model seafloor temperatures and our direct plume observations are both consistent with reports from Loihi Seamount, Hawaii, ∼10 year following an episode of seafloor volcanism. We hypothesize that the Society Islands hotspot may be undergoing a similar episode of both magmatic and hydrothermal reactivation.
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    A New Network for the Advancement of Marine Biotechnology in Europe and Beyond (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Marine organisms produce a vast diversity of metabolites with biological activities useful for humans, e.g., cytotoxic, antioxidant, anti-microbial, insecticidal, herbicidal, anticancer, pro-osteogenic and pro-regenerative, analgesic, anti-inflammatory, anticoagulant, cholesterol-lowering, nutritional, photoprotective, horticultural or other beneficial properties. These metabolites could help satisfy the increasing demand for alternative sources of nutraceuticals, pharmaceuticals, cosmeceuticals, food, feed, and novel bio-based products. In addition, marine biomass itself can serve as the source material for the production of various bulk commodities (e.g., biofuels, bioplastics, biomaterials). The sustainable exploitation of marine bio-resources and the development of biomolecules and polymers are also known as the growing field of marine biotechnology. Up to now, over 35,000 natural products have been characterized from marine organisms, but many more are yet to be uncovered, as the vast diversity of biota in the marine systems remains largely unexplored. Since marine biotechnology is still in its infancy, there is a need to create effective, operational, inclusive, sustainable, transnational and transdisciplinary networks with a serious and ambitious commitment for knowledge transfer, training provision, dissemination of best practices and identification of the emerging technological trends through science communication activities. A collaborative (net)work is today compelling to provide innovative solutions and products that can be commercialized to contribute to the circular bioeconomy. This perspective article highlights the importance of establishing such collaborative frameworks using the example of Ocean4Biotech, an Action within the European Cooperation in Science and Technology (COST) that connects all and any stakeholders with an interest in marine biotechnology in Europe and beyond.
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    Receptors Mediating Host-Microbiota Communication in the Metaorganism: The Invertebrate Perspective (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Multicellular organisms live in close association with a plethora of microorganism, which have a profound effect on multiple host functions. As such, the microbiota and its host form an intimate functional entity, termed the metaorganism or holobiont. But how does the metaorganism communicate? Which receptors recognize microbial signals, mediate the effect of the microbiota on host physiology or regulate microbiota composition and homeostasis? In this review we provide an overview on the function of different receptor classes in animal host-microbiota communication. We put a special focus on invertebrate hosts, including both traditional invertebrate models such as Drosophila melanogaster and Caenorhabditis elegans and “non-model” invertebrates in microbiota research. Finally, we highlight the potential of invertebrate systems in studying mechanism of host-microbiota interactions.
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    Recent changes in deep ventilation of the Mediterranean Sea; evidence from long-term transient tracer observations (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The Mediterranean Sea is a small region of the global ocean but with a very active overturning circulation that allows surface perturbations to be transported to the interior ocean. Understanding of ventilation is important for understanding and predicting climate change and its impact on ocean ecosystems. To quantify changes of deep ventilation, we investigated the spatiotemporal variability of transient tracers (i.e. CFC-12 and SF6) observations combined with temporal evolution of hydrographic and oxygen observations in the Mediterranean Sea from 13 cruises conducted during 1987-2018, with emphasize on the update from 2011 to 2018. Spatially, both the Eastern and Western Mediterranean Deep Water (EMDW and WMDW) show a general west-to-east gradient of increasing salinity and potential temperature but decreasing oxygen and transient tracer concentrations. Temporally, stagnant and weak ventilation is found in most areas of the EMDW during the last decade despite the prevailing ventilation in the Adriatic Deep Water between 2011 and 2016, which could be a result of the weakened Adriatic source intensity. The EMDW has been a mixture of the older Southern Aegean Sea dense waters formed during the Eastern Mediterranean Transient (EMT) event, and the more recent ventilated deep-water of the Adriatic origin. In the western Mediterranean basin, we found uplifting of old WMDW being replaced by the new deep-water from the Western Mediterranean Transition (WMT) event and uplifting of the new WMDW toward the Alboran Sea. The temporal variability revealed enhanced ventilation after the WMT event but slightly weakened ventilation after 2016, which could be a result of combined influences from the eastern (for the weakened Adriatic source intensity) and western (for the weakened influence from the WMT event) Mediterranean Sea. Additionally, the Mediterranean Sea is characterized by a Tracer Minimum Zone (TMZ) at mid-depth of the water column attributed to the rapid deep ventilation so that the TMZ is the slowest ventilated layer. This zone of weak ventilation stretches across the whole Mediterranean Sea from the Levantine basin into the western basin.
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    Simulated Heatwaves Lead to Upregulated Chemical Defense of a Marine Foundation Macrophyte Against Microbial Colonizers (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Climate change is characterized not only by an increase in mean temperature, but also an increase in the variability around the means causing extreme events like marine heatwaves. These events are expected to have strong influence on the ecology of marine foundation species such as the eelgrass Zostera marina. Bacterial and macroscopic foulers are ubiquitous in the marine environment; they can have detrimental impacts on macrophytes and warming is known to enhance bacterial fouling. Thus, to investigate the consequence of heatwaves on the chemical defense of eelgrass against microbial colonizers, we incubated Z. marina plants in the Kiel Outdoor Benthocosm system under ambient control conditions and two different heatwave treatments: a treatment experiencing two spring heatwaves followed by a summer heatwave, and a treatment only experiencing just the summer heatwave. The capacity to deter microbial colonizers was found to be significantly up-regulated in Z. marina from both heatwave treatments in comparison to Z. marina under control conditions, suggesting defense regulation of Z. marina in response to marine heatwaves. We conclude climate extremes such as heatwaves can trigger a regulation in the defense capacity, which could be necessary for resilience against climate change scenarios. Such dynamics in rapid regulation of defense capacity as found in this study could also apply to other host plant – microbe interactions under scenarios of ongoing climate change or extreme climate events like heatwaves.
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    Editorial: Zooplankton and Nekton: Gatekeepers of the Biological Pump (2020)
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    Publication Date: 2023-02-08
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    Early Diagenetic Imprint on Temperature Proxies in Holocene Corals: A Case Study From French Polynesia (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Coral-based reconstructions of sea surface temperatures (SSTs) using Sr/Ca, U/Ca and δ18O are important tools for quantitative analysis of past climate variabilities. However, post-depositional alteration of coral aragonite, particularly early diagenesis, restrict the accuracy of calibrated proxies even on young corals. Considering the diagenetic effects, we present new Mid to Late Holocene SST reconstructions on well-dated (U/Th: ∼70 yr to 5.4 ka) fossil Porites sp. collected from the Society Islands, French Polynesia. For few corals, quality pre-screening routines revealed the presence of secondary aragonite needles inside primary pore space, resulting in a mean increase in Sr/Ca ratios between 5-30%, in contrast to the massive skeletal parts. Characterized by a Sr/Ca above 10 mmol/mol, we interpret this value as the threshold between diagenetically altered and unaltered coral material. At a high-resolution, observed intra-skeletal variability of 5.4 to 9.9 mmol/mol probably reflects the physiological control of corals over their trace metal uptake, and individual variations controlled by CaCO3– precipitation rates. Overall, the Sr/Ca, U/Ca and δ18O trends are well correlated, but we observed a significant offset up to ± 7°C among the proxies on derived palaeo-SST estimates. It appears that the related alteration process tends to amplify temperature extremes, resulting in increased SST-U/Ca and SST-Sr/Ca gradients, and consequently their apparent temperature sensitivities. A relative SST reconstruction is still feasible by normalizing our records to their individual mean value defined as ΔSST. This approach shows that ΔSST records derived from different proxies agree with an amplitudinal variability of up to ± 2°C with respect to their Holocene mean value. Higher ΔSST values than the mean SSTs (Holocene warm periods) were recorded from ∼1.8 to ∼2.8 ka (Interval I), ∼3.7 to 4.0 ka (Interval III) and before ∼5 ka, while lower ΔSST values (Holocene cold periods, Interval II and IV) were recorded in between. The ensuing SST periodicity of ∼1.5 ka in the Society Islands record is in line with the solar activity reconstructed from 10Be and 14C production (Vonmoos et al., 2006), emphasizing the role of solar activity on climate variability during the Late Holocene.
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    Chloroflexi Dominate the Deep-Sea Golf Ball Sponges Craniella zetlandica and Craniella infrequens Throughout Different Life Stages (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Deep-sea sponge grounds are underexplored ecosystems that provide numerous goods and services to the functioning of the deep-sea. This study assessed the prokaryotic diversity in embryos, recruits, and adults of Craniella zetlandica and Craniella infrequens, common and abundant representatives of deep-sea sponge grounds in the North Atlantic. Our results reveal that symbiont transmission in the two Craniella sponge species likely occurs vertically, as highly similar microbial consortia have been identified in adults, embryos, and recruits. Moreover, transmission electron microscopy revealed high abundances of sponge-associated microorganisms, among which Chloroflexi (SAR202) were identified as common representatives by amplicon sequencing and fluorescence in situ hybridization (FISH). Equal diversity metrices, a similar overall prokaryotic community composition and a distinct dominance of the phylum Chloroflexi within all life stages are the key findings of our analyses. Information such as presented here provide understanding on the recruitment of deep-sea sponge holobionts which is needed to develop integrated management tools of such vulnerable marine ecosystems.
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    Discrete Pulses of Cooler Deep Water Can Decelerate Coral Bleaching During Thermal Stress: Implications for Artificial Upwelling During Heat Stress Events (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Global warming is considered to be the most severe threat to coral reefs globally, which makes it important for scientists to develop novel strategies that mitigate the impact of warming on corals and associated habitats. Artificial upwelling of cooler deep water to the surface layer may be a possible mitigation/management tool. In this study, we investigated the effect of simulated artificial upwelling with deep water off Bermuda collected at 50 m (24°C) and 100 m (20°C) on coral symbiont biology of 3 coral species (Montastrea cavernosa, Porites astreoides, and Pseudodiploria strigosa) in a temperature stress experiment. The following treatments were applied over a period of 3 weeks: (i) control at 28°C (ii) heat at 31°C, (iii) heat at 31°C+ deep water from 50 m depth, and (iv) heat at 31°C+ deep water from 100 m depth. Artificial upwelling was simulated over a period of 25 min on a daily basis resulting in a reduction of temperature for 2 h per day and the following degree-heating-weeks: 5.7°C-weeks for ii, 4.6°C-weeks for iii and 4.2°C-weeks for iv. Comparative analysis of photosynthetic rate, chlorophyll-a concentration and zooxanthellae density revealed a reduction of heat stress responses in artificial upwelling treatments in 2 of the 3 investigated species, and a stronger positive effect of 100-m water than 50-m water. These results indicate that artificial upwelling could be an effective strategy to mitigate coral bleaching during heat stress events allowing corals to adjust to increasing temperatures more gradually. It will still be necessary to further explore the ecological benefits as well as potential ecosystem impacts associated with different artificial upwelling scenarios to carefully implement an effective in situ artificial upwelling strategy in coral reefs.
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    The Calcium Carbonate Shell of Emiliania huxleyi Provides Limited Protection Against Viral Infection (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Coccolithophores are an important group of marine phytoplankton which cover themselves with the coccosphere – a shell composed of numerous calcium carbonate (CaCO3) platelets. Despite more than a century of coccolithophore research, it remains speculative why coccolithophores calcify. Resolving this question is essential to assess the competitive fitness of coccolithophores in the future ocean where changes in calcification are expected. Here, we used the Emiliania huxleyi – Emiliania huxleyi Virus 86 host-virus model system to test the hypothesis that the coccosphere serves as a physical barrier reducing viral infection. Therefore, we removed the coccosphere from living E. huxleyi cells and compared the infection progress relative to calcified cells in a series of 6 experiments under different growth conditions. We found that the coccosphere does not constitute an effective physical barrier against viral penetration, since non-growing calcified cells were susceptible to viral infection and lysis (growth stopped by light limitation). However, we also found that protection against the virus may depend on the daily growth cycle. E. huxleyi reached higher peak abundances when decalcified cells were allowed to rebuild their coccosphere before entering cell division phase and being exposed to the virus, thereby suggesting that rates of viral infection could be reduced by the coccosphere during the critical phase in the cell cycle. However, the benefit of this potential protection is arguably of limited ecological significance since the concentrations of both, calcified and decalcified E. huxleyi approached similar values until the end of the bloom. We conclude that the coccosphere provides at best a limited protection against infection with the EhV86.
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    Active Tectonics in the Kvarner Region (External Dinarides, Croatia) — An Alternative Approach Based on Focused Geological Mapping, 3D Seismological, and Shallow Seismic Imaging Data (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Active tectonics in long-lived orogenic belts usually manifests on the preexisting inherited structures. In the Kvarner region of the External Dinarides, an area with low-to-moderate seismicity related to the Adriatic microplate (Adria) northward movement, we deal with faults in predominantly carbonate rocks within tectonically complex NW-SE striking-and-thrust belt, which makes the identification and parametrization of the active structures challenging. Moreover, anthropogenic modifications greatly complicate access to the surface geological and geomorphological data. This paper demonstrates results of focused multidisciplinary research, from surface geological mapping and offshore shallow seismic surveys to earthquake focal mechanisms, as an active fault identification and parametrization kit, with a final goal to produce an across-methodological integrated model of the identified features in the future. Reverse, normal, and strike-slip orogen-parallel (longitudinal) to transverse faults were identified during geological mapping, but there is no clear evidence of their mutual relations and possible recent activity. The focal mechanisms calculated from the instrumental record include weak-to-moderate earthquakes and show solutions for all faulting types in the upper crust, compatible with the NE-SW oriented principal stress direction, with the stronger events favoring reverse and strike-slip faulting. The 3D spatial and temporal distribution of recent earthquake hypocenters indicate their clustering along predominantly subvertical transversal and steeply NE-dipping longitudinal planes. High-resolution shallow seismic geoacoustical survey (subbottom profiler) of the Quaternary sediments in the Rijeka Bay revealed local tectonic deformations of the stratified Late Pleistocene deposits that, along with overlaying mass-transport deposits, could imply prehistorical strong earthquake effects. Neotectonic faults onshore are tentatively recognized as highly fractured zones characterized by enhanced weathering, but there is no evidence for its recent activity. Thus, it seems that the active faults are blind and situated below the thin-skinned and highly deformed early-orogenic tectonic cover of the Adria. A strain accumulating deeper in the crust is probably irregularly redistributed near the surface along the preexisting fault network formed during the earlier phases of the Dinaric orogenesis. The results indicate a need for further multidisciplinary research that will contribute to a better seismic hazard assessment in the densely populated region that is also covered by strategic infrastructure.
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    The Possession of Coccoliths Fails to Deter Microzooplankton Grazers (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Phytoplankton play a central role in the regulation of global carbon and nutrient cycles, forming the basis of the marine food webs. A group of biogeochemically important phytoplankton, the coccolithophores, produce calcium carbonate scales that have been hypothesized to deter or reduce grazing by microzooplankton. Here, a meta-analysis of mesocosm-based experiments demonstrates that calcification of the cosmopolitan coccolithophore, Emiliania huxleyi, fails to deter microzooplankton grazing. The median grazing to growth ratio for E. huxleyi (0.56 ± 0.40) was not significantly different among non-calcified nano- or picoeukaryotes (0.71 ± 0.31 and 0.55 ± 0.34, respectively). Additionally, the environmental concentration of E. huxleyi did not drive preferential grazing of non-calcified groups. These results strongly suggest that the possession of coccoliths does not provide E. huxleyi effective protection from microzooplankton grazing. Such indiscriminate consumption has implications for the dissolution and fate of CaCO3 in the ocean, and the evolution of coccoliths.
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    Exploring Vitamin B1 Cycling and Its Connections to the Microbial Community in the North Atlantic Ocean (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Vitamin B1 (thiamin) is an essential coenzyme for all cells. Recent findings from experimental cell biology and genome surveys have shown that thiamin cycling by plankton is far more complex than was previously understood. Many plankton cells cannot produce thiamin (are auxotrophic) and obligately require an exogenous source of thiamin or one or more of 5 different thiamin-related compounds (TRCs). Despite this emerging evidence for the evolution among plankton of complex interactions related to thiamin, the influence of TRCs on plankton community structure and productivity are not understood. We report measurements of three dissolved TRCs 4-amino-5-aminomethyl-2-methylpyrimidine (AmMP), 5-(2-hydroxyethyl)-4-methyl-1,3-thiazole-2-carboxylic acid (cHET), and 4-methyl-5-thiazoleethanol (HET) that have never before been assayed in seawater. Here we characterize them alongside other TRCs that were measured previously [thiamin and 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP)], in depth profiles from a latitudinal transect in the north Atlantic in March 2018. TRC concentrations ranged from femptomolar to picomolar. Surface depletion relative to a maximum near the bottom of the euphotic zone and low concentrations at deeper depths were consistent features. Our observations suggest that when bacterial abundance and production are low, TRC concentrations approach a steady state where TRC production and consumption terms are balanced. Standing stocks of TRCs also appear to be positively correlated with bacterial production. However, near the period of peak biomass in the accumulation phase of a bloom we observed an inverse relationship between TRCs and bacterial production, coincident with an increased abundance of Flavobacteria that comparative genomics indicates could be vitamin B1 auxotrophs. While these observations suggest that the dissolved pool of TRCs is often at steady state, with TRC production and consumption balanced, our data suggests that bloom induced shifts in microbial community structure and activity may cause a decoupling between TRC production and consumption, leading to increased abundances of some populations of bacteria that are putatively vitamin B1 auxotrophs.
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    Enhance Ocean Carbon Observations: Successful Implementation of a Novel Autonomous Total Alkalinity Analyzer on a Ship of Opportunity (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Over recent decades, observations based on merchant vessels (Ships of Opportunity—SOOP) equipped with sensors measuring the CO2 partial pressure (pCO2) in the surface seawater formed the backbone of the global ocean carbon observation system. However, the restriction to pCO2 measurements alone is one severe shortcoming of the current SOOP observatory. Full insight into the marine inorganic carbon system requires the measurement of at least two of the four measurable variables which are pCO2, total alkalinity (TA), dissolved inorganic carbon (DIC), and pH. One workaround is to estimate TA values based on established temperature-salinity parameterizations, but this leads to higher uncertainties and the possibility of regional and/or seasonal biases. Therefore, autonomous SOOP-based TA measurements are of great interest. Our study describes the implementation of a novel autonomous analyzer for seawater TA, the CONTROS HydroFIAⓇ TA system (-4H-JENA engineering GmbH, Germany) for unattended routine TA measurements on a SOOP line operating in the North Atlantic. We present the installation in detail and address major issues encountered with autonomous measurements using this analyzer, e.g., automated cleaning and stabilization routines, and waste handling. Another issue during long-term deployments is the provision of reference seawater in large-volume containers for quality assurance measurements and drift correction. Hence, a stable large-volume seawater storage had to be found. We tested several container types with respect to their suitability to store seawater over a time period of 30 days without significant changes in TA. Only one gas sampling bag made of polyvinylidene fluoride (PVDF) satisfied the high stability requirement. In order to prove the performance of the entire setup, we compared the autonomous TA measurements with TA from discrete samples taken during the first two trans-Atlantic crossings. Although the measurement accuracy in unattended mode (about ± 5 μmol kg^-1) slightly deteriorated compared to our previous system characterization, its overall uncertainty fulfilled requirements for autonomous TA measurements on SOOP lines. A comparison with predicted TA values based on an established and often used parameterization pointed at regional and seasonal limitations of such TA predictions. Consequently, TA observations with better coverage of spatiotemporal variability are needed, which is now possible with the method described here.
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    A critical examination of the role of marine snow and zooplankton faecal pellets in removing ocean surface microplastic (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Numerical simulations and emissions estimates of plastic in and to the ocean consistently over-predict the surface inventory, particularly in the case of microplastic (MP), i.e. fragments less than 5 mm in length. Sequestration in the sediments has been both predicted and, to a limited extent, observed. It has been hypothesized that biology may be exporting a significant fraction of surface MP by way of marine snow aggregation and zooplankton faecal pellets. We apply previously published data on MP concentrations in the surface ocean to an earth system model of intermediate complexity to produce a first estimate of the potential global sequestration of MP by marine aggregates, including faecal pellets. We find a MP seafloor export potential of between 7.3E3-4.2E5 metric tons per year, or about 0.06-8.8% of estimated total annual plastic ocean pollution rates. We find that presently, aggregates alone would have the potential to remove most existing surface ocean MP to the seafloor within less than 2 years if pollution ceases. However, the observed accumulation of MP in the surface ocean, despite this high potential rate of removal, suggests that detrital export is an ineffective pathway for permanent MP removal. We theorize a prominent role of MP biological fouling and de-fouling in the rapid recycling of aggregate-associated MP in the upper ocean. We also present an estimate of how the potential detrital MP sink might change into the future, as climate change (and projected increasing MP pollution) alters the marine habitat. The polar regions, and the Arctic in particular, are projected to experience increasing removal rates as export production increases faster than MP pollution. Northern hemisphere subtropical gyres are projected to experience slowing removal rates as stratification and warming decrease export production, and MP pollution increases. However, significant uncertainty accompanies these results.
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    Toward a Harmonization for Using in situ Nutrient Sensors in the Marine Environment (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Improved comparability of nutrient concentrations in seawater is required to enhance the quality and utility of measurements reported to global databases. Significant progress has been made over recent decades in improving the analysis and data quality for traditional laboratory measurements of nutrients. Similar efforts are required to establish high-quality data outputs from in situ nutrient sensors, which are rapidly becoming integral components of ocean observing systems. This paper suggests using the good practices routine established for laboratory reference methods to propose a harmonized set of deployment protocols and of quality control procedures for nutrient measurements obtained from in situ sensors. These procedures are intended to establish a framework to standardize the technical and analytical controls carried out on the three main types of in situ nutrient sensors currently available (wet chemical analyzers, ultraviolet optical sensors, electrochemical sensors) for their deployments on all kinds of platform. The routine reference controls that can be applied to the sensors are listed for each step of sensor use: initial qualification under controlled conditions in the laboratory, preparation of the sensor before deployment, field deployment and finally the sensor recovery. The fundamental principles applied to the laboratory reference method are then reviewed in terms of the calibration protocol, instrumental interferences, environmental interferences, external controls, and method performance assessment. Data corrections (linearity, sensitivity, drifts, interferences and outliers) are finally identified along with the concepts and calculations for qualification for both real time and time delayed data. This paper emphasizes the necessity of future collaborations between research groups, reference-accredited laboratories, and technology developers, to maintain comparability of the concentrations reported for the various nutrient parameters measured by in situ sensors.
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    Sinking Organic Particles in the Ocean—Flux Estimates From in situ Optical Devices (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Optical particle measurements are emerging as an important technique for understanding the ocean carbon cycle, including contributions to estimates of their downward flux, which sequesters carbon dioxide (CO2) in the deep sea. Optical instruments can be used from ships or installed on autonomous platforms, delivering much greater spatial and temporal coverage of particles in the mesopelagic zone of the ocean than traditional techniques, such as sediment traps. Technologies to image particles have advanced greatly over the last two decades, but the quantitative translation of these immense datasets into biogeochemical properties remains a challenge. In particular, advances are needed to enable the optimal translation of imaged objects into carbon content and sinking velocities. In addition, different devices often measure different optical properties, leading to difficulties in comparing results. Here we provide a practical overview of the challenges and potential of using these instruments, as a step toward improvement and expansion of their applications.
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    Metagenomics meets Electrochemistry: utilizing the huge catalytic potential from the uncultured microbial majority for energy-storage (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Hydrogen can in the future serve as an advantageous carrier of renewable energy if its production via water electrolysis and utilization in fuel cells are realized with high energy efficiency and non-precious electrocatalysts. In an unprecedented novel combination of structured electrodes with hydrogen converting enzymes from the uncultured and thus largely inaccessible microbial majority (〉99 %) we address this challenge. The geometrically defined electrodes with large specific surface area allow for low overpotentials and high energy efficiencies to be achieved. Enzymatic hydrogen evolution electrocatalysts are used as alternatives to noble metals. The enzymes are harnessed from the environmental microbial DNA (metagenomes) of hydrothermal vents exhibiting dynamic hydrogen and oxygen concentrations and are recovered via a recently developed novel activity-based screening tool. The screen enables us to target currently unrecognized hydrogenase enzymes from metagenomes via direct expression in a surrogate host microorganism. This circumvents the need for cultivation of the source organisms, the primary bottleneck when harnessing enzymes from microbes. One hydrogen converting metagenome-derived enzyme exhibited high activity and unusually high stability when dispersed on a TiO2-coated polyacrylonitrile fiber electrode. Our results highlight the tremendous potential of enzymes derived from uncultured microorganisms for applications in energy conversion and storage technologies.
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    Soothsaying DOM: A Current Perspective on the Future of Oceanic Dissolved Organic Carbon (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The vast majority of freshly produced oceanic dissolved organic carbon (DOC) is derived from marine phytoplankton, then rapidly recycled by heterotrophic microbes. A small fraction of this DOC survives long enough to be routed to the interior ocean, which houses the largest and oldest DOC reservoir. DOC reactivity depends upon its intrinsic chemical composition and extrinsic environmental conditions. Therefore, recalcitrance is an emergent property of DOC that is analytically difficult to constrain. New isotopic techniques that track the flow of carbon through individual organic molecules show promise in unveiling specific biosynthetic or degradation pathways that control the metabolic turnover of DOC and its accumulation in the deep ocean. However, a multivariate approach is required to constrain current carbon fluxes so that we may better predict how the cycling of oceanic DOC will be altered with continued climate change. Ocean warming, acidification, and oxygen depletion may upset the balance between the primary production and heterotrophic reworking of DOC, thus modifying the amount and/or composition of recalcitrant DOC. Climate change and anthropogenic activities may enhance mobilization of terrestrial DOC and/or stimulate DOC production in coastal waters, but it is unclear how this would affect the flux of DOC to the open ocean. Here, we assess current knowledge on the oceanic DOC cycle and identify research gaps that must be addressed to successfully implement its use in global scale carbon models.
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    Characterization of Two Hydrogen-Oxidizing Hydrogenovibrio Strains From Kermadec Volcanic Island Arc Hydrothermal Vents (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The genus Hydrogenovibrio consists of chemolithotrophic sulfur- and hydrogen-oxidizing bacteria that are found in diverse marine environments including hydrothermal vents where they can reach high cell numbers. Although several vent Hydrogenovibrio genomes encode for [NiFe]-hydrogenases (enzymes catalyzing the reversible reaction of hydrogen into protons and electrons), different attempts to grow these strains on hydrogen failed for a long time. Not long ago it was shown that some Hydrogenovibrio strains from hydrothermal vents are indeed able to oxidize hydrogen, which broadens their physiological spectrum in a competitive environment for energy sources. We here identify two active hydrogen consuming bacteria of the Hydrogenovibrio genus with different hydrogenase genes from vents in the South Pacific Ocean. Based on our results, hydrogen consuming Hydrogenovibrio species seem to be much more widespread in the oceans than expected.
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    Eco-Evolutionary Interaction in Competing Phytoplankton: Nutrient Driven Genotype Sorting Likely Explains Dominance Shift and Species Responses to CO2 (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: How ecological and evolutionary processes interact and together determine species and community responses to climate change is poorly understood. We studied long-term dynamics (over approximately 200 asexual generations) in two phytoplankton species, a coccolithophore (Emiliania huxleyi), and a diatom (Chaetoceros affinis), to increased CO2 growing alone, or competing with one another in co-occurrence. To allow for rapid evolutionary responses, the experiment started with a standing genetic variation of nine genotypes in each of the species. Under co-occurrence of both species, we observed a dominance shift from C. affinis to E. huxleyi after about 120 generations in both CO2 treatments, but more pronounced under high CO2. Associated with this shift, we only found weak adaptation to high CO2 in the diatom and none in the coccolithophore in terms of species’ growth rates. In addition, no adaptation to interspecific competition could be observed by comparing the single to the two-species treatments in reciprocal assays, regardless of the CO2 treatment. Nevertheless, highly reproducible genotype sorting left only one genotype remaining for each of the species among all treatments. This strong evolutionary selection coincided with the dominance shift from C. affinis to E. huxleyi. Since all other conditions were kept constant over time, the most parsimonious explanation for the dominance shift is that the strong evolutionary selection was driven by the experimental nutrient conditions, and in turn potentially altered competitive ability of the two species. Thus, observed changes in the simplest possible two-species phytoplankton “community” demonstrated that eco-evolutionary interactions can be critical for predicting community responses to climate change in rapidly dividing organisms such as phytoplankton.
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    Predicting Impacts of Offshore Monoculture Farm Expansion in Ultra-Oligotrophic Waters of the Levantine Basin (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The aim of this brief research report was to define the consequential shifts in biomass and trophic structure of an ecosystem surrounding an offshore monoculture fish farm in Israel. It attempts to clarify the impact of the industry expansion and input of artificial fish pellets on functional group biomasses. We account for the direct addition of artificial food pellets, the metabolic wastes from the caged fish in a mass-balance food web model (Ecopath), as well as the temporal expansion of the farm’s production capacity to 21,000 t over a 30-year period (Ecosim). In the static mass-balance model of the food web, the addition of the fish cages at its current production size of 1000 t does not adversely affect the system, and trophic energy transfer is still dependent on primary production versus the detrital pathway. The model suggests a semi-stable ecosystem with low trophic interactions. With time, the increase in fish farming at the site is characterized by an increase of all functional group biomasses at the site over the 30-year period. The accumulation in detritus most notably correlates to greater biomass for all benthic functional niches and their secondary consumers. It is, therefore, apt to develop an indicator species list to indicate negative site disturbance. In summary, the sediment column condition will be the main indicator for ecosystem stability, as well as the increase in apex predators that are attracted to the site from the accumulation of discards at the cage bottom
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    Seasonal and geographical transitions in eukaryotic phytoplankton community structure in the Atlantic and Pacific Oceans (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Much is known about how broad eukaryotic phytoplankton groups vary according to nutrient availability in marine ecosystems. However, genus- and species-level dynamics are generally unknown, although important given that adaptation and acclimation processes differentiate at these levels. We examined phytoplankton communities across seasonal cycles in the North Atlantic (BATS) and under different trophic conditions in the eastern North Pacific (ENP), using phylogenetic classification of plastid-encoded 16S rRNA amplicon sequence variants (ASVs) and other methodologies, including flow cytometric cell sorting. Prasinophytes dominated eukaryotic phytoplankton amplicons during the nutrient-rich deep-mixing winter period at BATS. During stratification (‘summer’) uncultured dictyochophytes formed ~35 ± 10% of all surface plastid amplicons and dominated those from stramenopile algae, whereas diatoms showed only minor, ephemeral contributions over the entire year. Uncultured dictyochophytes also comprised a major fraction of plastid amplicons in the oligotrophic ENP. Phylogenetic reconstructions of near-full length 16S rRNA sequences established 11 uncultured Dictyochophyte Environmental Clades (DEC). DEC-I and DEC-VI dominated surface dictyochophytes under stratification at BATS and in the ENP, and DEC-IV was also important in the latter. Additionally, although less common at BATS, Florenciella-related clades (FC) were prominent at depth in the ENP. In both ecosystems, pelagophytes contributed notably at depth, with PEC-VIII (Pelagophyte Environmental Clade) and (cultured) Pelagomonas calceolata being most important. Q-PCR confirmed the near absence of P. calceolata at the surface of the same oligotrophic sites where it reached ~1,500 18S rRNA gene copies ml-1 at the DCM. To further characterize phytoplankton present in our samples, we performed staining and at-sea single-cell sorting experiments. Sequencing results from these indicated several uncultured dictyochophyte clades are comprised of predatory mixotrophs. From an evolutionary perspective, these cells showed both conserved and unique features in the chloroplast genome, with high expression of multiple genes and a selfish element (group II intron) in ENP metatranscriptomes. Comparative analyses across the Pacific and Atlantic sites support the conclusion that predatory dictyochophytes thrive under low nutrient conditions. The observations that several uncultured dictyochophyte lineages are seemingly capable of photosynthesis and predation, raises questions about potential shifts in phytoplankton trophic roles associated with seasonality and long-term ocean change.
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    Advancing Global Ecological Modeling Capabilities to Simulate Future Trajectories of Change in Marine Ecosystems (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Considerable effort is being deployed to predict the impacts of climate change and anthropogenic activities on the ocean's biophysical environment, biodiversity, and natural resources to better understand how marine ecosystems and provided services to humans are likely to change and explore alternative pathways and options. We present an updated version of EcoOcean (v2), a spatial-temporal ecosystem modeling complex of the global ocean that spans food-web dynamics from primary producers to top predators. Advancements include an enhanced ability to reproduce spatial-temporal ecosystem dynamics by linking species productivity, distributions, and trophic interactions to the impacts of climate change and worldwide fisheries. The updated modeling platform is used to simulate past and future scenarios of change, where we quantify the impacts of alternative configurations of the ecological model, responses to climate-change scenarios, and the additional impacts of fishing. Climate-change scenarios are obtained from two Earth-System Models (ESMs, GFDL-ESM2M, and IPSL-CMA5-LR) and two contrasting emission pathways (RCPs 2.6 and 8.5) for historical (1950-2005) and future (2006-2100) periods. Standardized ecological indicators and biomasses of selected species groups are used to compare simulations. Results show how future ecological trajectories are sensitive to alternative configurations of EcoOcean, and yield moderate differences when looking at ecological indicators and larger differences for biomasses of species groups. Ecological trajectories are also sensitive to environmental drivers from alternative ESM outputs and RCPs, and show spatial variability and more severe changes when IPSL and RCP 8.5 are used. Under a non-fishing configuration, larger organisms show decreasing trends, while smaller organisms show mixed or increasing results. Fishing intensifies the negative effects predicted by climate change, again stronger under IPSL and RCP 8.5, which results in stronger biomass declines for species already losing under climate change, or dampened positive impacts for those increasing. Several species groups that win under climate change become losers under combined impacts, while only a few (small benthopelagic fish and cephalopods) species are projected to show positive biomass changes under cumulative impacts. EcoOcean v2 can contribute to the quantification of cumulative impact assessments of multiple stressors and of plausible ocean-based solutions to prevent, mitigate and adapt to global change.
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    Linking Ecology to Genetics to Better Understand Adaptation and Evolution: A Review in Marine Macrophytes (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Ecological processes and intra-specific genetic diversity reciprocally affect each other. While the importance of uniting ecological variables and genetic variation to understand species’ plasticity, adaptation, and evolution is increasingly recognized, only few studies have attempted to address the intersection of population ecology and genetics using marine macrophyte as models. Representative empirical case studies on genetic diversity are reviewed that explore ecological and evolutionary processes in marine macrophytes. These include studies on environment-induced phenotypic plasticity and associated ecological adaptation; population genetic variation and structuring driven by ecological variation; and ecological consequences mediated by intraspecific and interspecific diversity. Knowledge gaps are also discussed that impede the connection of ecology and genetics in macrophytes and possible approaches to address these issues. Finally, an eco-evolutionary perspective is advocated, by incorporating structural-to-functional genomics and life cycle complexity, to increase the understanding of the adaptation and evolution of macrophytes in response to environmental heterogeneity.
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    Rare earth elements in Andaman Island surface seawater: Geochemical tracers for the monsoon? (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The Asian summer monsoon affects the lives of billions of people. With the aim of identifying geochemical tracers for the monsoon-related freshwater input from the major rivers draining into the Bay of Bengal (BoB) and the Andaman Sea (AnS), we have analyzed the yttrium and rare earth element (YREE) concentration of surface seawater samples from various locations spanning the Andaman Islands in 2011 to 2013. In some locations, samples have been taken in March, July, and November 2011, thus spanning the seasonal cycle and including different monsoon phases. Generally, the YREE patterns are similar to those reported for offshore samples from the BoB and AnS in January 1997, with seawater-normalized patterns of most samples characterized by middle REE enrichments. An enhancement of these middle REE bulges accompanies large increases in dissolved REE concentrations from streams and sediment-rich areas such as mangrove environments. Conversely, some samples, in particular those taken 1–2 days after heavy rainfall in March 2011, show pronounced REE scavenging accompanied by the preferential removal of dissolved light REEs (LREEs) and by higher Y/Ho ratios. The Nd isotope signature of the remaining dissolved REE phase of these low YREE samples is more radiogenic than local rocks and sediments. The time series at a location away from local input sources show remarkably similar REE patterns and concentrations in March and July. Then in October–November, following the peak in monsoon-induced river discharge, the dissolved REE concentrations increase by almost a factor of two, whereas Nd isotopes become less radiogenic by 1.5 εNd units. These unradiogenic values are found at the same site in the winter dry season of the following year, demonstrating the decoupling of sea surface salinity (SSS) and Nd. The large sub-annual variability of YREE concentrations and Nd isotopes encountered was likely caused by the conversion of YREE from the dissolved (probably colloidal) pool to the labile particulate fraction. The comparison of unfiltered and filtered sample concentrations reveals the existence of a large labile particulate pool in the BoB and AnS that most likely originates from the massive river sediment fluxes and is instrumental in the seasonal changes observed.
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    Compositional and quantitative insights into bacterial and archaeal communities of South Pacific deep-sea sponges (Demospongiae and Hexactinellida (2020)
    Frontiers
    Details
    Publication Date: 2023-02-08
    Description: In the present study, we profiled bacterial and archaeal communities from 13 phylogenetically diverse deep-sea sponge species (Demospongiae and Hexactinellida) from the South Pacific by 16S rRNA-gene amplicon sequencing. Additionally, the associated bacteria and archaea were quantified by real-time qPCR. Our results show that bacterial communities from the deep-sea sponges are mostly host-species specific similar to what has been observed for shallow-water demosponges. The archaeal deep-sea sponge community structures are different from the bacterial community structures in that they are almost completely dominated by a single family, which are the ammonia-oxidizing genera within the Nitrosopumilaceae. Remarkably, the archaeal communities are mostly specific to individual sponges (rather than sponge-species), and this observation applies to both hexactinellids and demosponges. Finally, archaeal 16s gene numbers, as detected by quantitative real-time PCR, were up to three orders of magnitude higher than in shallow-water sponges, highlighting the importance of the archaea for deep-sea sponges in general.
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  • 68
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    Salinity and Time Can Alter Epibacterial Communities of an Invasive Seaweed (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The establishment of epibacterial communities is fundamental to seaweed health and fitness, in modulating ecological interactions and may also facilitate adaptation to new environments. Abiotic factors like salinity can determine bacterial abundance, growth and community composition. However, influence of salinity as a driver of epibacterial community composition (until species level) has not been investigated for seaweeds and especially under long time scales. We also do not know how abiotic stressors may influence the ‘core’ bacterial species of seaweeds. Following an initial (immediately after field collection) sampling of epibacterial community of an invasive red seaweed Agarophyton vermicullophylum, we conducted a long term mesocosm experiment for 5 months, to examine the influence of three different salinities (low, medium and high) at two different time points (3 months after start of experiment and 5 months, i.e., at the end of experiment) on the epibacterial community richness and composition of Agarophyton. Metagenomic sequencing showed that epibacterial communities changed significantly according to salinity and time points sampled. Epibacterial richness was significantly different between low and high salinities at both time points. Epibacterial richness also varied significantly between 3 months (after start of experiment) and 5 months (end of experiment) within low, medium and high salinity level. Irrespective of salinity levels and time points sampled 727 taxa consistently appeared in all Agarophyton samples hinting at the presence of core bacterial species on the surface of the alga. Our results indicate that both salinity and time can be major driving forces in structuring epibacterial communities of seaweeds with respect to richness and β-diversity. We highlight the necessity of conducting long term experiments allowing us to detect and understand epibacterial succession over time on seaweeds.
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  • 69
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    Pan-Arctic Ocean Primary Production Constrained by Turbulent Nitrate Fluxes (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Arctic Ocean primary productivity is limited by light and inorganic nutrients. With sea ice cover declining in recent decades, nitrate limitation has been speculated to become more prominent. Although much has been learned about nitrate supply from general patterns of ocean circulation and water column stability, a quantitative analysis requires dedicated turbulence measurements that have only started to accumulate in the last dozen years. Here we present new observations of the turbulent vertical nitrate flux in the Laptev Sea, Baffin Bay, and Young Sound (North-East Greenland), supplementing a compilation of 13 published estimates throughout the Arctic Ocean. Combining all flux estimates with a Pan-Arctic database of in situ measurements of nitrate concentration and density, we found the annual nitrate inventory to be largely determined by the strength of stratification and by bathymetry. Nitrate fluxes explained the observed regional patterns and magnitudes of both new primary production and particle export on annual scales. We argue that with few regional exceptions, vertical turbulent nitrate fluxes can be a reliable proxy of Arctic primary production accessible through autonomous and large-scale measurements. They may also provide a framework to assess nutrient limitation scenarios based on clear energetic and mass budget constraints resulting from turbulent mixing and freshwater flows.
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  • 70
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    MtDNA-Based Phylogeography of the Red Alga Agarophyton vermiculophyllum (Gigartinales, Rhodophyta) in the Native Northwest Pacific (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The repeated transgression and regression of coastlines mediated by the late Quaternary glacial–interglacial cycles make the northwest Pacific a hot spot to study marine speciation and population diversity. The red alga Agarophyton vermiculophyllum is an ecologically important species native to the northwest Pacific, capturing considerable research interest due to its wide-range invasiveness in Europe and North America. However, the knowledge of phylogeographic structure and intraspecific genetic diversity across the entire native range was still scarce. Here, we used 1,214-bp of mitochondrial cytochrome c oxidase subunit 1 (cox1) to explore phylogeographic patterns, lineage structure, and population genetic differentiation of 48 A. vermiculophyllum populations in the northwest Pacific. Our DNA data revealed overall high haplotype diversity and low nucleotide diversity and five phylogeographically structured genetic lineages that diverged significantly from each other. S-DIVA analysis showed the ancestors of A. vermiculophyllum originating from multiple areas encompassing the Japan–Pacific coast, East and South China Seas. This combined evidence indicates that A. vermiculophyllum might have survived in multiple scattered glacial refugia during the late Quaternary climate oscillations in the northwest Pacific. Such knowledge may help to better understand how palaeoclimate interacted with contemporary environments to contribute to intraspecific genetic variation and provide a new perspective for conserving natural resource of A. vermiculophyllum in the northwest Pacific.
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  • 71
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    Particulate Organic Carbon Deconstructed: Molecular and Chemical Composition of Particulate Organic Carbon in the Ocean (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The dynamics of the particulate organic carbon (POC) pool in the ocean are central to the marine carbon cycle. POC is the link between surface primary production, the deep ocean, and sediments. The rate at which POC is degraded in the dark ocean can impact atmospheric CO2 concentration. Therefore, a central focus of marine organic geochemistry studies is to improve our understanding of POC distribution, composition, and cycling. The last few decades have seen improvements in analytical techniques that have greatly expanded what we can measure, both in terms of organic compound structural diversity and isotopic composition, and complementary molecular omics studies. Here we provide a brief overview of the autochthonous, allochthonous, and anthropogenic components comprising POC in the ocean. In addition, we highlight key needs for future research that will enable us to more effectively connect diverse data sources and link the identity and structural diversity of POC to its sources and transformation processes.
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    High Diversity of Cytospora Associated With Canker and Dieback of Rosaceae in China, With 10 New Species Described (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Cytospora canker is a destructive disease of numerous hosts and causes serious economic losses with a worldwide distribution. Identification of Cytospora species is difficult due to insufficient phylogenetic understanding and overlapped morphological characteristics. In this study, we provide an assessment of 23 Cytospora spp., which covered nine genera of Rosaceae, and focus on 13 species associated with symptomatic branch or twig canker and dieback disease in China. Through morphological observation and multilocus phylogeny of internal transcribed spacer (ITS), large nuclear ribosomal RNA subunit (LSU), actin (act), RNA polymerase II subunit (rpb2), translation elongation factor 1-α (tef1-α), and beta-tubulin (tub2) gene regions, the results indicate 13 distinct lineages with high branch support. These include 10 new Cytospora species, i.e., C. cinnamomea, C. cotoneastricola, C. mali-spectabilis, C. ochracea, C. olivacea, C. pruni-mume, C. rosicola, C. sorbina, C. tibetensis, and C. xinjiangensis and three known taxa including Cytospora erumpens, C. leucostoma, and C. parasitica. This study provides an initial understanding of the taxonomy of Cytospora associated with canker and dieback disease of Rosaceae in China.
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  • 73
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    Exploring the niche concept in a simple metaorganism (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Organisms and their resident microbial communities - the microbiome - form a complex and mostly stable ecosystem. It is known that the composition of the microbiome and bacterial species abundances can have a major impact on host health and Darwinian fitness, but the processes that lead to these microbial patterns have not yet been identified. We here apply the niche concept and trait-based approaches as a first step in understanding the patterns underlying microbial community assembly and structure in the simple metaorganism Hydra. We find that the carrying capacities in single associations do not reflect microbiota densities as part of the community, indicating a discrepancy between the fundamental and realized niche. Whereas in most cases, the realized niche is smaller than the fundamental one, as predicted by theory, the opposite is observed for Hydra’s two main bacterial colonizers. Both, Curvibacter sp. and Duganella sp. benefit from association with the other members of the microbiome and reach higher fractions as compared to when they are the only colonizer. This cannot be linked to any particular trait that is relevant for interacting with the host or by the utilization of specific nutrients but is most likely determined by metabolic interactions between the individual microbiome members.
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  • 74
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    Modeling coral bleaching mitigation potential of water vertical translocation – an analogue to geoengineered artificial upwelling (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Artificial upwelling (AU) is a novel geoengineering technology that brings seawater from the deep ocean to the surface. Within the context of global warming, AU techniques are proposed to reduce sea surface temperature at times of thermal stress around coral reefs. A computationally fast but coarse 3D Earth System model (3.6° longitude × 1.8° latitude) was used to investigate the environmental impacts of hypothetically implemented AU strategies in the Great Barrier Reef, South China Sea, and Hawaiian regions. While omitting the discussion on sub-grid hydrology, we simulated in our model a water translocation from either 130 or 550 m depth to sea surface at rates of 1 or 50 m3 s−1 as analogues to AU implementation. Under the Representative Concentration Pathway 8.5 emissions scenario from year 2020 on, the model predicted a prevention of coral bleaching until the year 2099 when AU was implemented, except under the least intense AU scenario (water from 130 m depth at 1 m3 s−1). Yet, intense AU implementation (water from 550 m depth at 50 m3 s-1) will likely have adverse effects on coral reefs by overcooling the surface water, altering salinity, decreasing calcium carbonate saturation, and considerably increasing nutrient levels. Our result suggests that if we utilize AU for mitigating coral bleaching during heat stress, AU implementation needs to be carefully designed with respect to AU’s location, depth, intensity and duration so that undesirable environmental effects are minimized. Following a proper installation and management procedure, however, AU has the potential to decelerate destructive bleaching events and buy corals more time to adjust to climate change.
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  • 75
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    Complex Interactions of Temperature, Light and Tissue Damage on Seagrass Wasting Disease in Zostera marina (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: The temperate seagrass species eelgrass Zostera marina can be infected by the wasting disease pathogen Labyrinthula zosterae, which is believed to have killed about 90% of the seagrass in the Atlantic Ocean in the 1930s. It is not known why this opportunistic pathogen sometimes becomes virulent, but the recurrent outbreaks may be due to a weakening of the Z. marina plants from adverse environmental changes. This study investigated the individual and interactive effects of multiple extrinsic factors (temperature, light, and tissue damage) on the host-pathogen interaction between Z. marina and L. zosterae in a fully crossed infection experiment. The degree of infection was measured as both lesion coverage and L. zosterae cell concentration. We also investigated if the treatment factors affect the chemical defense of the host, measured as the inhibitory capacity of seagrass extracts in bioassays with L. zosterae. Finally, gene expression of a set of targeted genes was quantified in order to investigate how the treatments change Z. marina’s response to infection. Light had a pronounced effect on L. zosterae infection measured as lesion coverage, where reduced light conditions increased lesions by 35%. The response to light on L. zosterae cell concentration was more complex and showed significant interaction with the temperature treatment. Cell concentration was also significantly affected by physical damage, where damage surprisingly resulted in a reduced cell concentration of the pathogen. No treatment factor caused detectable decrease in the inhibitory capacity of the seagrass extracts. There were several interactive effects between L. zosterae infection and the treatment factors on Z. marina growth, and on the expression of genes associated with immune defense, phenol synthesis and primary metabolism, showing that the molecular reaction toward L. zosterae infection depends on prevailing environmental conditions. Our study shows that individual or interactive effects of light, temperature and tissue damage can affect multiple aspects of host-pathogen interactions in seagrasses. These results highlight the complexity of marine host-pathogen systems, showing that more multi-factorial investigations are needed to gain a better understanding of disease in marine plants under different environmental conditions.
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    Marine Microbial Food Web Networks During Phytoplankton Bloom and Non-bloom Periods: Warming Favors Smaller Organism Interactions and Intensifies Trophic Cascade (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Microbial food web organisms are at the base of the functioning of pelagic ecosystems and support the whole marine food web. They are very reactive to environmental changes and their interactions are modified in response to different productive periods such as phytoplankton bloom and non-bloom as well as contrasted climatic years. To study ecological associations, identify potential interactions between microorganisms and study the structure of the microbial food web in coastal waters, a weekly monitoring was carried out in the Thau Lagoon on the French Mediterranean coast. The monitoring lasted from winter to late spring during two contrasting climatic years, a typical Mediterranean (2015) and a year with an extreme warm winter (2016). Correlation networks comprising 110 groups/taxa/species were constructed to characterize potential possible interactions between the microorganisms during bloom and non-bloom periods. Complex correlation networks during the bloom and dominated by negative intraguild correlations and positive correlations of phytoplankton with bacteria. Such pattern can be interpreted as a dominance of competition and mutualism. In contrast, correlation networks during the non-bloom period were less complex and mostly dominated by tintinnids associations with bacteria mostly referring to potential feeding on bacteria, which suggests a shift of biomass transfer from phytoplankton-dominated food webs during bloom to more bacterioplankton-based food webs during non-bloom. Inter-annual climatic conditions significantly modified the structure of microbial food webs. The warmer year favored relationships among smaller group/taxa/species at the expense of large phytoplankton and ciliates, possibly due to an intensification of the trophic cascade with a potential shift in energy circulation through microbial food web. Our study compares a typical Mediterranean spring with another mimicking the prospected intensification of global warming; if such consideration holds true, the dominance of future coastal marine ecosystems will be shifted from the highly productive herbivorous food web to the less productive microbial food web.
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    The Pan-Arctic Continental Slope: Sharp Gradients of Physical Processes Affect Pelagic and Benthic Ecosystems (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Continental slopes – steep regions between the shelf break and abyssal ocean – play key roles in the climatology and ecology of the Arctic Ocean. Here, through review and synthesis, we find that the narrow slope regions contribute to ecosystem functioning disproportionately to the size of the habitat area (∼6% of total Arctic Ocean area). Driven by inflows of sub-Arctic waters and steered by topography, boundary currents transport boreal properties and particle loads from the Atlantic and Pacific Oceans along-slope, thus creating both along and cross-slope connectivity gradients in water mass properties and biomass. Drainage of dense, saline shelf water and material within these, and contributions of river and meltwater also shape the characteristics of the slope domain. These and other properties led us to distinguish upper and lower slope domains; the upper slope (shelf break to ∼800 m) is characterized by stronger currents, warmer sub-surface temperatures, and higher biomass across several trophic levels (especially near inflow areas). In contrast, the lower slope has slower-moving currents, is cooler, and exhibits lower vertical carbon flux and biomass. Distinct zonation of zooplankton, benthic and fish communities result from these differences. Slopes display varying levels of system connectivity: (1) along-slope through property and material transport in boundary currents, (2) cross-slope through upwelling of warm and nutrient rich water and down-welling of dense water and organic rich matter, and (3) vertically through shear and mixing. Slope dynamics also generate separating functions through (1) along-slope and across-slope fronts concentrating biological activity, and (2) vertical gradients in the water column and at the seafloor that maintain distinct physical structure and community turnover. At the upper slope, climatic change is manifested in sea-ice retreat, increased heat and mass transport by sub-Arctic inflows, surface warming, and altered vertical stratification, while the lower slope has yet to display evidence of change. Model projections suggest that ongoing physical changes will enhance primary production at the upper slope, with suspected enhancing effects for consumers. We recommend Pan-Arctic monitoring efforts of slopes given that many signals of climate change appear there first and are then transmitted along the slope domain.
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    Oceanic Routing of Wind-Sourced Energy Along the Arctic Continental Shelves (2020)
    Frontiers
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    Publication Date: 2023-02-08
    Description: Data from coastal tide gauges, oceanographic moorings, and a numerical model show that Arctic storm surges force continental shelf waves (CSWs) that dynamically link the circumpolar Arctic continental shelf system. These trains of barotropic disturbances result from coastal convergences driven by cross-shelf Ekman transport. Observed propagation speeds of 600−3000 km day–1, periods of 2−6 days, wavelengths of 2000−7000 km, and elevation maxima near the coast but velocity maxima near the upper slope are all consistent with theoretical CSW characteristics. Other, more isolated events are tied to local responses to propagating storm systems. Energy and phase propagation is from west to east: ocean elevation anomalies in the Laptev Sea follow Kara Sea anomalies by one day and precede Chukchi and Beaufort Sea anomalies by 4−6 days. Some leakage and dissipation occurs. About half of the eastward-propagating energy in the Kara Sea passes Severnaya Zemlya into the Laptev Sea. About half of the eastward-propagating energy from the East Siberian Sea passes southward through Bering Strait, while one quarter is dissipated locally in the Chukchi Sea and another quarter passes eastward into the Beaufort Sea. Likewise, CSW generation in the Bering Sea can trigger elevation and current speed anomalies downstream in the Northeast Chukchi Sea of 25 cm and 20 cm s–1, respectively. Although each event is ephemeral, the large number of CSWs generated annually suggest that they represent a non-negligible source of time-averaged energy transport and bottom stress-induced dissipative mixing, particularly near the outer shelf and upper slope. Coastal water level and landfast ice breakout event forecasts should include CSW effects and associated lag times from distant upstream winds.
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    Zooplankton-Mediated Fluxes in the Eastern Tropical North Atlantic (2020)
    Frontiers
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    Publication Date: 2023-02-09
    Description: Zooplankton organisms are a central part of pelagic ecosystems. They feed on all kinds of particulate matter and their egested fecal pellets contribute substantially to the passive sinking flux to depth. Some zooplankton species also conduct diel vertical migrations (DVMs) between the surface layer (where they feed at nighttime) and midwater depth (where they hide at daytime from predation). These DVMs cause the active export of organic and inorganic matter from the surface layer as zooplankton organisms excrete, defecate, respire, die, and are preyed upon at depth. In the Eastern Tropical North Atlantic (ETNA), the daytime distribution depth of many migrators (300–600 m) coincides with an expanding and intensifying oxygen minimum zone (OMZ). We here assess the day and night-time biomass distribution of mesozooplankton with an equivalent spherical diameter of 0.39–20 mm in three regions of the ETNA, calculate the DVM-mediated fluxes and compare these to particulate matter fluxes and other biogeochemical processes. Integrated mesozooplankton biomass in the ETNA region is about twice as high at a central OMZ location (cOMZ; 11° N, 21° W) compared to the Cape Verde Ocean Observatory (CVOO; 17.6° N, 24.3° W) and an oligotrophic location at 5° N, 23° W (5N). An Intermediate Particle Maximum (IPM) is particularly strong at cOMZ compared to the other regions. This IPM seems to be related to DVM activity. Zooplankton DVM was found to be responsible for about 31–41% of nitrogen loss from the upper 200m of the water column. Gut flux and mortality make up about 31% of particulate matter supply to the 300–600 m depth layer at cOMZ, whereas it makes up about 32% and 41% at CVOO and 5N, respectively. Resident and migrant zooplankton are responsible for about 7–27% of the total oxygen demand at 300–600 m depth. Changes in zooplankton abundance and migration behavior due to decreasing oxygen levels at midwater depth could therefore alter the elemental cycling of oxygen and carbon in the ETNA OMZ and impact the removal of nitrogen from the surface layer.
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    Marvelous Marine Microgels: On the Distribution and Impact of Gel-Like Particles in the Oceanic Water-Column (2020)
    Frontiers
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    Publication Date: 2023-05-04
    Description: Three-dimensional hydrogels of organic polymers have been suggested to affect a variety of processes in the ocean, including element cycling, microbial ecology, food-web dynamics, and air-sea exchange. However, their abundance and distribution in the ocean are hardly known, strongly limiting an assessment of their global significance. As a consequence, marine gels are often disregarded in biogeochemical or ecosystem models. Here, we demonstrate the widespread abundance of microgels in the ocean, from the surface to the deep sea. We exhibit size spectra of two major classes of marine gels, transparent exopolymer particles (TEP) and Coomassie stainable particles (CSP) for three different ocean regimes: (a) Polar Seas, (b) Eastern Boundary Upwelling Systems, and (c) the oligotrophic open ocean. We show the variations of TEP and CSP over the water-column, and compare them to dissolved organic carbon (DOC). We also discuss how the observed distributional patterns inform about productivity and particle dynamics of these distinct oceanic regimes. Finally, we exploit current research topics, where consideration of microgels may give new insight into the role of organic matter for marine biogeochemical processes.
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    The Influence of Water Mass Mixing and Particle Dissolution on the Silicon Cycle in the Central Arctic Ocean (2020)
    Frontiers
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    Publication Date: 2023-06-29
    Description: The use of the silicon isotope composition of dissolved silicon (δ30Si-DSi) to understand the marine silicon cycle has been increasing in recent years. Here we present δ30Si-DSi and δ30Si of biogenic silica (δ30Si-bSiO2) in the intermediate to deep waters of the Central Arctic Ocean (AO) aiming at investigating in more detail the relative influence of water mass mixing and particle flux on the Si cycle in the AO. Comparing the δ30Si-DSi with the water mass composition derived from Optimum Multiparameter (OMP) analysis, we were able to test the influence of the water masses in the δ30Si-DSi distribution. We were able to show the dominant Atlantic Water (AW) influence at the stations close to the Fram Strait (station 32 and 40, δ30Si-DSi = 1.51 ± 0.11‰, 2SEM, n = 3) and the only small δ30Si-DSi modification when compared to the endmember value from a previous study (δ30Si-DSi = 1.55‰). The Dense Arctic Atlantic Water, dominating from 200 to 500 m water depth (except for stations 32 and 40, where it was present only at 500 m), was marked by heavier δ30Si-DSi of 1.62 ± 0.06‰ (2SEM, n = 21). This is probably due to the influence of entraining equally dense water from the shelves. Due to productivity and Si utilization on the shelves, both water and bSiO2, that were transported laterally into the Central AO, were characterized by higher δ30Si, with δ30Si-bSiO2 of 1.64 ± 0.13‰ (2SEM, n = 7). Particle dissolution at greater depths did not play a major role in the δ30Si-DSi of deep waters due to the low bSiO2 concentrations at these greater depths. Outflowing water masses from the AO present different δ30Si-DSi, with lower values around 1.46‰ originating from the Central AO influencing predominantly DSOW and ISOW, and higher values around 2‰ originating from the Canadian AO influencing predominantly LSW. Those signatures correspond with the δ30Si-DSi found in the North Atlantic. Consequently, the AO potentially presents several isotopically different endmembers that contribute to the deep water formed in the North Atlantic.
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    Long-Term Changes of Particle Flux in the Canary Basin Between 1991 and 2009 and Comparison to Sediment Trap Records Off Mauritania (2020)
    Frontiers
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    Publication Date: 2023-09-19
    Description: Eastern Boundary Upwelling Ecosystems (EBUEs) are associated with high biological productivity, high fish catch and they highly contribute to marine carbon sequestration. Whether coastal upwelling has intensified or weakened under climate change in the past decades is controversially discussed and different approaches (e.g., time-series of chlorophyll, wind, sea surface temperature, modeling experiments) have been considered. We present a record of almost two decades of particle fluxes (1991–2009) from ca. 600 to 3100 m water depth in the Canary Basin at site ESTOC (European Station for Time series in the Ocean Canary Islands; ca. 29°N, 15°30.W, ca. 3600 m water depth), located in the offshore transition zone of the northern Canary Current-EBUE. We compare these flux records with those measured at a mesotrophic sediment trap site further south off Cape Blanc (Mauritania, ca. 21°N). The deep ocean fluxes at ESTOC in ca. 3 km recorded the evolution of the coastal Cape Ghir filament (30–32°N, 10–12°W) due to lateral advection of particles, whereas the upper water column sediment traps in ca. 1 km reflected the oligotrophic conditions in the overlying waters of ESTOC. We observed an increased emphasis in spring-time fluxes since 2005, associated with a change in particle composition, while satellite chlorophyll biomass did not show this pattern. Due to its northern location in the CC-EBUEs, spring biogenic fluxes at ESTOC provide a better relationship to the forcing of the North Atlantic Oscillation than those recorded further south off Cape Blanc. Off Cape Blanc, deep fluxes showed the best overlap with the deep ESTOC fluxes during the spring season before 2005. On the long-term, both chlorophyll and particle fluxes showed an increasing trend at ESTOC which was not observed further south at the mesotrophic Cape Blanc site. This might indicate that, depending on their location along the NW African margin, coastal upwelling systems react differently to global change.
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    Deployment of Negative Emissions Technologies at the national level: A need for holistic feasibility assessments (2020)
    Frontiers
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    Publication Date: 2024-06-07
    Description: The 2015 Paris Agreement aims to strengthen the global response to climate change, and to maintain an average global temperature well below 2 °C, with aspirations towards 1.5 °C, by means of balancing sources and sinks of greenhouse gas emissions. Following this, the importance of carbon dioxide removal in global emission pathways has been further emphasized, and Negative Emissions Technologies (NETs) that capture carbon from the atmosphere and remove it from the system have been put in the spotlight. NETs range from innovative, engineered technologies, to well-known approaches like afforestation/reforestation. These technologies essentially compensate for a shrinking carbon budget coupled with hard-to-abate future emissions, and a historical lack of action. However, none has been deployed at scales close to what is envisioned in emission pathways in line with the Paris Agreement goals. To understand the potential contribution of NETs to meet global emission goals, we need to better understand opportunities and constraints for deploying NETs on a national level. We examine 17 Long-Term Low Greenhouse Gas Emission Development Strategies (LT-LEDS), and discuss them in the context of available NETs feasibility assessments. Our mapping shows that most countries include NETs in their long-term strategies, and that enhancement of natural sinks is the most dominating type of NET in these strategies. In line with many feasibility assessments, LT-LEDS focus on technical and biophysical considerations, and neglect socio-cultural dimensions. We suggest that feasibility assessments at the national level need to be more holistic; context-specific and comprehensive in terms of aspects assessed.
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