ALBERT

Description: Vibrios are rod-shaped bacteria, and are a functionally and phylogenetically diverse grouping of Gram-negative microbes found widely in aquatic, estuarine, and marine habitats. Approximately a dozen Vibrio species are known to cause disease in humans, and infection is usually initiated from exposure to seawater or consumption of raw or undercooked seafood. Although a wide range of different bacterial species contain multiple chromosomes, Vibrio species are noted in that they possess two circular chromosomes. Bacteria of the genus Vibrio are commonly found in tropical and temperate coastal and estuarine waters. Vibrios are among the most common bacteria that inhabit surface waters throughout the world and are responsible for a number of severe infections both in humans and animals. Vibriosis is characterized by diarrhea, primary septicemia, wound infections, or other extraintestinal infections. Select strains of V. cholerae, V. parahaemolyticus, V. vulnificus, and V. alginolyticus are perhaps considered the most serious human pathogens from this genus. Two Vibrio species in particular, V. vulnificus and V. parahaemolyticus are significant foodborne human pathogens, and most frequently infections occur via the consumption of naturally contaminated shellfish produce. It is worth noting that these pathogens represent a significant cause of morbidity and mortality. For example, an estimated 80,000 people contract Vibrio infections each year in the United States, with a sizeable fraction originating from foodborne sources, such as consumption of raw or undercooked seafood produce. Recent data from the Centers for Disease Control and Prevention (CDC) in the United States have indicated that there has been a significant increase in reported infections associated with vibrios, particularly in the last two decades. The annual incidence of reported vibriosis per 100,000 population has increased significantly in the United States from 1996 to 2010, highlighting the importance of these pathogens from a clinical context. Calculations based upon probable incidence of vibriosis have estimated that V. vulnificus and V. parahaemolyticus are the first and third most costly marine-borne pathogens, costing $233 and $20 million, respectively. From a foodborne perspective V. vulnificus and V. parahaemolyticus represent the major pathogens from the Vibrio genus in terms of clinical impact and relevance, and as such this chapter is mostly concerned with these species. These taxa do not sustain prolonged presence in clinical or agricultural settings, where it would likely undergo human-induced selection for antibiotic resistance. As such, these bacteria represent a particularly interesting group of pathogens to study antibiotic resistance, as they provide a “snapshot” of resistance presumably acquired from environmental rather than clinical settings. Despite their public-health significance, strains of V. parahaemolyticus and V. vulnificus have not been extensively monitored for antimicrobial resistance, in contrast to enteric pathogens such as Salmonella or Campylobacter. Given their increasing incidence, global distribution, and severity of disease progression (especially V. vulnificus) it is critical to gain a better understanding of the antimicrobial susceptibility patterns of V. vulnificus and V. parahaemolyticus originating from the environment (Shaw et al., 2014). Data from such sources is invaluable, particularly from routine antimicrobial screening of large numbers of environmental and clinical Vibrio strains as it can provide effective baseline data for treatment purposes.

Description: Triassic turbidites of the Nanpanjiang basin of south China represent the most expansive and voluminous siliciclastic turbidite accumulation in south China. The Nanpanjiang basin occurs at a critical junction between the southern margin of the south China plate and the Indochina, Siamo and Sibumasu plates to the south and southwest. The Triassic Yangtze carbonate shelf and isolated carbonated platforms in the basin have been extensively studied, but silicilastic turbidites in the basin have received relatively little attention. Deciphering the facies, paleocurrent indicators and provenance of the Triassic turbidites is important for several reasons: it promises to help resolve the timing of plate collisions along suture zones bordering the basin to the south and southwest, it will enable evaluation of which suture zones and Precambrian massifs were source areas, and it will allow an evaluation of the impact of the siliciclastic flux on carbonate platform evolution within the basin. Turbidites in the basin include the Early Triassic Shipao Formation and the Middle-Late Triassic Baifeng, Xinyuan, Lanmu Bianyang and Laishike formations. Each ranges upward of 700 m and the thickest is nearly 3 km. The turbidites contain very-fine sand in the northern part of the basin whereas the central and southern parts of the basin also commonly contain fine and rarely medium sand size. Coarser sand sizes occur where paleocurrents are from the south, and in this area some turbidites exhibit complete bouma sequences with graded A divisions. Successions contain numerous alternations between mud-rich and sand-rich intervals with thickness trends corresponding to proximal/ distal fan components. Spectacularly preserved sedimentary structures enable robust evaluation of turbidite systems and paleocurrent analyses. Analysis of paleocurrent measurements indicates two major directions of sediment fill. The northern part of the basin was sourced primarily by the Jiangnan massif in the northeast, and the central and southern parts of the basin were sourced primarily from suture zones and the Yunkai massif to the south and southeast respectively. Sandstones of the Lower Triassic Shipao Fm. have volcaniclastic composition including embayed quartz and glass shards. Middle Triassic sandstones are moderately mature, matrix-rich, lithic wackes. The average QFL ratio from all point count samples is 54.1/18.1/27.8% and the QmFLt ratio is 37.8/ 18.1/ 44.1%. Lithic fragments are dominantly claystone and siltstone clasts and metasedimentary clasts such as quartz mica tectonite. Volcanic lithics are rare. Most samples fall in the recycled orogen field of QmFLt plots, indicating a relatively quartz and lithic rich composition consistent with derivation from Precambrian massifs such as the Jiangnan, and Yunkai. A few samples from the southwest part of the basin fall into the dissected arc field, indicating a somewhat more lithic and feldspar-rich composition consistent with derivation from a suture zone Analysis of detrial zircon populations from 17 samples collected across the basin indicate: (1) Several samples contain zircons with concordant ages greater than 3000 Ma, (2) there are widespread peaks across the basin at 1800 Ma and 2500, (3) a widespread 900 Ma population, (3) a widespread population of zircons at 440 Ma, and (5) a larger population of younger zircons about 250 Ma in the southwestern part which is replaced to the north and northwest by a somewhat older population around 260-290 Ma. The 900 Ma provenance fits derivation from the Jiangnan Massif, the 2500, 1800, and 440 Ma provenance fits the Yunkai massif, and the 250 Ma is consistent with convergence and arc development in suture zones bordering the basin on the south or southwest. Early siliciclastic turbidite flux, proximal to source areas impacted carbonate platform evolution by infilling the basin, reducing accommodation space, stabilizing carbonate platform margins and promoting margin progradation. Late arrival, in areas far from source areas caused margin aggradation over a starved basin, development of high relief aggradational escarpments and unstable scalloped margins.