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  • Articles  (17,902)
  • Oxford University Press  (17,902)
  • Tree Physiology  (685)
  • Bulletin of the London Mathematical Society  (662)
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  • 1
    Publication Date: 2015-06-04
    Description: The Mediterranean region is a hot spot of climate change vulnerable to increased droughts and heat waves. Scaling carbon fluxes from leaf to landscape levels is particularly challenging under drought conditions. We aimed to improve the mechanistic understanding of the seasonal acclimation of photosynthesis and morphology in sunlit and shaded leaves of four Mediterranean trees ( Quercus ilex L., Pinus halepensis Mill., Arbutus unedo L. and Quercus pubescens Willd.) under natural conditions. V c,max and J max were not constant, and mesophyll conductance was not infinite, as assumed in most terrestrial biosphere models, but varied significantly between seasons, tree species and leaf position. Favourable conditions in winter led to photosynthetic recovery and growth in the evergreens. Under moderate drought, adjustments in the photo/biochemistry and stomatal/mesophyllic diffusion behaviour effectively protected the photosynthetic machineries. Severe drought, however, induced early leaf senescence mostly in A. unedo and Q. pubescens , and significantly increased leaf mass per area in Q. ilex and P. halepensis . Shaded leaves had lower photosynthetic potentials but cushioned negative effects during stress periods. Species-specificity, seasonal variations and leaf position are key factors to explain vegetation responses to abiotic stress and hold great potential to reduce uncertainties in terrestrial biosphere models especially under drought conditions.
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    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 2
    Publication Date: 2015-06-04
    Description: Plants experiencing drought stress are frequently more susceptible to pathogens, likely via alterations in physiology that create favorable conditions for pathogens. Common plant responses to drought include the production of reactive oxygen species (ROS) and the accumulation of free amino acids (AAs), particularly proline. These same phenomena also frequently occur during pathogenic attack. Therefore, drought-induced perturbations in AA and ROS metabolism could potentially contribute to the observed enhanced susceptibility. Furthermore, nitrogen (N) availability can influence AA accumulation and affect plant resistance, but its contributions to drought-induced susceptibility are largely unexplored. Here we show that drought induces accumulation of hydrogen peroxide (H 2 O 2 ) in Austrian pine ( Pinus nigra Arnold) shoots, but that shoot infection by the blight and canker pathogen Diplodia sapinea (Fr.) Fuckel leads to large reductions in H 2 O 2 levels in droughted plants. In in vitro assays, H 2 O 2 was toxic to D. sapinea , and the fungus responded to this oxidative stress by increasing catalase and peroxidase activities, resulting in substantial H 2 O 2 degradation. Proline increased in response to drought and infection when examined independently, but unlike all other AAs, proline further increased in infected shoots of droughted trees. In the same tissues, the proline precursor, glutamate, decreased significantly. Proline was found to protect D. sapinea from H 2 O 2 damage, while also serving as a preferred N source in vitro. Fertilization increased constitutive and drought-induced levels of some AAs, but did not affect plant resistance. A new model integrating interactions of proline and H 2 O 2 metabolism with drought and fungal infection of plants is proposed.
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  • 3
    Publication Date: 2015-06-04
    Description: Small differences in the sensitivity of stomatal conductance to light intensity on leaf surfaces may lead to large differences in total canopy transpiration ( E C ) with increasing canopy leaf area ( L ). Typically, the increase of L would more than compensate for the decrease of transpiration per unit of leaf area ( E L ), resulting in concurrent increase of E C . However, highly shade-intolerant species, such as Larix principis-rupprechtii Mayr., may be so sensitive to increased shading that such compensation is not complete. We hypothesized that in such a stand, windfall-induced spatial variation at a decameter scale would result in greatly reduced E L in patches of high L leading to lower E C than low competition patches of sparse canopy. We further hypothesized that quicker extraction of soil moisture in patches of lower competition will result in earlier onset of drought symptoms in these patches. Thus, patches of low L will transition from light to soil moisture as the factor dominating E L . This process should progressively homogenize E C in the stand even as the variation of soil moisture is increasing. We tested the hypotheses utilizing sap flux of nine trees, and associated environmental and stand variables. The results were consistent with only some of the expectations. Under non-limiting soil moisture, E L was very sensitive to the spatial variation of L , decreasing sharply with increasing L and associated decrease of mean light intensity on leaf surfaces. Thus, under the conditions of ample soil moisture maximum E C decreased with increasing patch-scale L . Annual E C and biomass production also decreased with L , albeit more weakly. Furthermore, variation of E C among patches decreased as average stand soil moisture declined between rain events. However, contrary to expectation, high L plots which transpired less showed a greater E L sensitivity to decreasing stand-scale soil moisture, suggesting a different mechanism than simple control by decreasing soil moisture. We offer potential explanations to the observed phenomenon. Our results demonstrate that spatial variation of L at decameter scale, even within relatively homogeneous, single-species, even-aged stands, can produce large variation of transpiration, soil moisture and biomass production and should be considered in 1-D soil–plant–atmosphere models.
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  • 4
    Publication Date: 2015-06-04
    Description: The main goal of this study was to develop a method for the extraction and indirect estimation of the quantity of calcium oxalate (CaOx) in the foliage of trees. Foliar tissue was collected from a single tree of each species (five conifers and five hardwoods) for comparison of extractions in different solvents using 10 replicates per species from the same pool of tissue. For each species, calcium (Ca) and oxalate were extracted sequentially in double deionized water and 2N acetic acid, and finally, five replicate samples were extracted in 5% (0.83N) perchloric acid (PCA) and the other five in 2N hydrochloric acid (HCl); three cycles of freezing and thawing were used for each solvent. Total ions were extracted by microwave digestion. Calcium was quantified with an inductively coupled plasma emission spectrophotometer method and oxalate was eluted and quantified using a high performance liquid chromatography method. This experiment was repeated again with two conifer and two hardwood species using four trees per species, and two analytical replicates for each tree. We report here that, regardless of age of individual trees within a species, time of collection or species type, the third extraction in PCA or HCl resulted in near equimolar quantities of Ca and oxalate ( r 2  ≥ 0.99). This method provides an easy estimate of the quantity of CaOx crystals using a small sample of foliar tissue. An additional benefit of PCA is that it precipitates the nucleic acids and proteins, allowing the quantification of several free/soluble metabolites such as amino acids, polyamines, organic acids and inorganic elements all from a single sample extract.
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  • 5
    Publication Date: 2015-09-19
    Description: We compute the algebraic $K$ -theory of the non-commutative ring $k\langle x_1,\ldots ,x_n \rangle /(m^a)$ when $k$ is a perfect field of positive characteristic and $m=(x_1,\ldots ,x_n)$ . We express the answer in terms of the truncation poset Witt vectors developed in Angeltveit [‘Witt vectors and truncation posets’, Preprint, 2014, arXiv:1409.4156].
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  • 6
    Publication Date: 2015-09-19
    Description: In this paper, we investigate the exactness of the Grassmannian Bernstein-Gel’fand-Gel’fand complexes introduced in a previous work of the author, and obtain some inequalities between some Hodge numbers of some irregular varieties. In particular, we obtain sharp lower bounds for the Hodge numbers of smooth subvarieties of Abelian varieties, as well as some improvements of results of Lazarsfeld-Popa and Lombardi concerning threefolds and fourfolds.
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  • 7
    Publication Date: 2015-09-19
    Description: We prove that every finitely presented group with positive first $\ell ^2$ -Betti number that virtually surjects onto $\mathbb Z$ is acylindrically hyperbolic. In particular, this implies acylindrical hyperbolicity of finitely presented residually finite groups with positive first $\ell ^2$ -Betti number as well as groups of deficiency at least $2$ .
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  • 8
    Publication Date: 2015-09-19
    Description: We give an elementary proof of Iyama–Yoshino's classification of rigid maximal Cohen-Macaulay modules on Veronese embeddings in $\mathbb P ^9$ .
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  • 9
    Publication Date: 2015-09-19
    Description: The virtual dimensions of both framed and unframed SU(2) magnetic monopoles on asymptotically conic 3-manifolds are obtained by computing the index of a Fredholm extension of the associated deformation complex. The unframed dimension coincides with the one obtained by Braam for conformally compact 3-manifolds. The computation follows from the application of a Callias-type index theorem.
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  • 10
    Publication Date: 2015-09-19
    Description: Let $f : (\mathbb {C}^n, 0) \rightarrow (\mathbb {C}, 0)$ be a semiquasihomogeneous function. We give a formula for the local Łojasiewicz exponent ${\mathcal L}_0 (f)$ of $f$ , in terms of weights of $f$ . In particular, in the case of a quasihomogeneous (QH) isolated singularity $f$ , we generalize a formula for ${\mathcal L}_0 (f)$ of Krasiłski, Oleksik and Płoski from 3 to $n$ dimensions. This was previously announced in the paper [ 19 ] of Tan, Yau and Zuo [Łojasiewicz inequality for weighted homogeneous polynomial with isolated singularity, Proc. Amer. Math. Soc. 138 (2010) 3975–3984], but as a matter of fact it was not proved correctly there, as noted by the AMS reviewer Tadeusz Krasiłski. As a consequence of our result, we obtain that the Łojasiewicz exponent is invariant in topologically trivial families of singularities coming from a QH germ. This is an affirmative partial answer to Teissier's conjecture.
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  • 11
    Publication Date: 2015-09-19
    Description: We show that the complement of the closure of the coamoeba of a variety of codimension $k + 1$ is $k$ -convex, in the sense of Gromov and Henriques. This generalizes a result of Nisse for hypersurface coamoebas. We use this to show that the complement of the nonarchimedean coamoeba of a variety of codimension $k + 1$ is $k$ -convex.
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  • 12
    Publication Date: 2015-09-19
    Description: We prove an analog of Lagrange's theorem for continued fractions on the Heisenberg group: points with an eventually periodic continued fraction expansion are those that satisfy a particular type of quadratic form, and vice-versa.
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  • 13
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    Oxford University Press
    Publication Date: 2015-09-19
    Description: Let $(M^n, g)$ be a compact $n$ -dimensional ( $n\geq 2$ ) manifold with nonnegative Ricci curvature, and if $n\geq 3,$ then we assume that $(M^n, g)\times \mathbb {R}$ has nonnegative isotropic curvature. The lower bound of the Ricci flow's existence time on $(M^n, g)$ is proved. This provides an alternative proof for the uniform lower bound of a family of closed Ricci flows' maximal existence times, which was first proved by E. Cabezas-Rivas and B. Wilking. We also get an interior curvature estimate for $n= 3$ under ${\rm Rc}\geq 0$ assumption among others. Combining these results, we proved the short-time existence of the Ricci flow on a large class of three-dimensional open manifolds, which admit some suitable exhaustion covering and have nonnegative Ricci curvature.
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  • 14
    Publication Date: 2015-09-19
    Description: Given any $\varepsilon 〉 0$ , we construct an orthonormal system of $n_k$ uniformly bounded polynomials of degree at most $k$ on the unit sphere in $\mathbb {R}^{m+1}$ where $n_k$ is bigger than $1-\varepsilon $ times the dimension of the space of polynomials of degree at most $k$ . Similarly, we construct an orthonormal system of sections of powers $A^k$ of a positive holomorphic line bundle on a compact Kähler manifold with cardinality bigger than $1-\varepsilon $ times the dimension of the space of global holomorphic sections to $A^k$ .
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  • 15
    Publication Date: 2015-09-19
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  • 16
    Publication Date: 2015-09-19
    Description: We prove that if $\mu $ is a Radon measure on the Heisenberg group $\mathbb {H}^n$ such that the density $\Theta ^s(\mu ,\cdot )$ , computed with respect to the Korányi metric $d_H$ , exists and is positive and finite on a set of positive $\mu $ measure, then $s$ is an integer. The proof relies on an analysis of uniformly distributed measures on $(\mathbb {H}^n,d_H)$ . We provide a number of examples of such measures, illustrating both the similarities and the striking differences of this sub-Riemannian setting from its Euclidean counterpart.
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  • 17
    Publication Date: 2015-09-19
    Description: Let $d 〉 1$ be an integer. In 1986, Shen defined a class of weight modules $F^\alpha _b(V)$ over the Witt algebra $\mathcal {W}_d$ for $\alpha \in {\mathbb C} ^d$ , $b\in {{\mathbb C}}$ , and an irreducible module $V$ over the general linear Lie algebra $\mathfrak {gl} _d$ on which the identity matrix acts as multiplication by $b$ . In 1996, Eswara Rao determined necessary and sufficient conditions for these modules to be irreducible when $V$ is finite-dimensional. In this note, we will determine necessary and sufficient conditions for all these modules $F^\alpha _b(V)$ to be irreducible where $V$ is not necessarily finite-dimensional. In this way, we obtain a large new family of irreducible $\mathcal {W}_d$ -modules with infinite-dimensional weight spaces.
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  • 18
    Publication Date: 2015-09-19
    Description: Using the Bockstein spectral sequence developed previously by the authors, we compute the ring $ER(n)^\ast (BO(q))$ explicitly. We then use this calculation to show that the ring spectrum $MO[2^{n+1}]$ is $ER(n)$ -orientable (but not $ER(n+1)$ -orientable), where $MO[2^{n+1}]$ is defined as the Thom spectrum for the self-map of $BO$ given by multiplication by $2^{n+1}$ .
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  • 19
    Publication Date: 2015-09-19
    Description: The commuting probability of a finite group is defined to be the probability that two randomly chosen group elements commute. Let ${{\mathcal P}}\subset (0,1]$ be the set of commuting probabilities of all finite groups. We prove that every point of ${{\mathcal P}}$ is nearly an Egyptian fraction of bounded complexity. As a corollary, we deduce two conjectures of Keith Joseph from 1977: all limit points of ${{\mathcal P}}$ are rational, and ${{\mathcal P}}$ is well ordered by $ 〉 $ . We also prove analogous theorems for bilinear maps of abelian groups.
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  • 20
    Publication Date: 2015-09-22
    Description: Although copepods have been considered tolerant against the direct influence of the ocean acidification (OA) projected for the end of the century, some recent studies have challenged this view. Here, we have examined the direct impact of short-term exposure to a pCO 2 / pH level relevant for the year 2100 ( pH NBS , control: 8.18, low pH : 7.78), on the physiological performance of two representative marine copepods: the calanoid Acartia grani and the cyclopoid Oithona davisae . Adults of both species, from laboratory cultures, were preconditioned for four consecutive days in algal suspensions ( Akashiwo sanguinea ) prepared with filtered sea water pre-adjusted to the targeted pH values via CO 2 bubbling. We measured the feeding and respiratory activity and reproductive output of those pre-conditioned females. The largely unaffected fatty acid composition of the prey offered between OA treatments and controls supports the absence in the study of indirect OA effects (i.e. changes of food nutritional quality). Our results show no direct effect of acidification on the vital rates examined in either copepod species. Our findings are compared with results from previous short- and long-term manipulative experiments on other copepod species.
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  • 21
    Publication Date: 2015-09-22
    Description: We analyzed the genetic structure of the radiolarian morphospecies Larcopyle buetschlii from the surface to deep waters (up to 2000 m) in the Japan Sea using the internal transcribed spacer (ITS) regions of ribosomal RNA genes. Each individual had several ITS variants, but these polymorphisms show no vertical phylogeographic structure, suggesting a single biological species. Its rapid clonal reproduction suggested by high ITS variation likely plays a pivotal role in maintaining its wide vertical distribution.
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  • 22
    Publication Date: 2015-09-22
    Description: Phronima sedentaria is a hyperiid amphipod that diel migrates into a pronounced oxygen minimum zone (OMZ) in the Eastern Tropical North Pacific. In this study, oxygen consumption and lactate production were measured in P. sedentaria to estimate the aerobic and anaerobic contributions to total metabolism under conditions that mimic its day- (1% oxygen, 10°C) and night-time (20% oxygen, 20°C) habitat. When exposed to hypoxia and low temperature, the total metabolism of P. sedentaria was depressed by 78% compared with normoxic conditions. The metabolic enzymes citrate synthase (CS) and lactate dehydrogenase (LDH) were also measured as indicators of aerobic and anaerobic metabolism, and compared with specimens collected from the California Current and the North Atlantic to assess potential adaptations to low oxygen. LDH activity was not significantly different between regions. Significant differences in CS activity may be due to variation in food availability. Climate change is predicted to increase surface temperatures and cause the expansion of OMZs. This will result in vertical compression of the night-time range for P. sedentaria and is likely to have the same impact on other diel migrators. Habitat compression will reduce zooplankton contribution to carbon cycling and alter oceanic ecology, including predator–prey interactions.
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  • 23
    Publication Date: 2015-09-22
    Description: Many phytoplankton exploit phosphorus (P) from organic sources when dissolved inorganic P (DIP) is depleted. This process is, however, rarely considered in ecological and biogeochemical models. We present a mechanistic model describing explicitly the ability of phytoplankton to use dissolved organic P (DOP) when DIP is limiting, by synthesizing alkaline phosphatase (AP) that releases DIP from DOP. This model, applicable to any phytoplankton species expressing AP, is here specifically developed for the colony-forming Phaeocystis globosa. It describes the main processes related to P metabolism, including DIP transport, intracellular accumulation and assimilation. Model behaviour is explored in DIP-limiting batch-type conditions for different DOP ranging between 0 and 1.5 mmol P m –3 . Simulations show that the DOP-derived DIP increases the maximum biomass reached and extends the period of net growth. The magnitude of the enhanced biomass production is controlled by the DOP initially present as well as the released DOP, the latter being recycled by lysis of P. globosa cells. We also present a simplified model version derived from the mechanistic model, which involves fewer state variables and parameters. The latter is directly usable in both variable (quota-type) and fixed stoichiometry descriptions of phytoplankton growth.
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  • 24
    Publication Date: 2015-09-22
    Description: Zooplankton diel vertical migration (DVM) is often explained as a balance between predator avoidance and resource acquisition. However, recent studies suggest that ultraviolet radiation (UV) may also be important in driving zooplankton DVM in some systems. Williamson et al. ( Williamson et al ., 2011 ) proposed the "transparency-regulator hypothesis," which integrates UV into our current understanding of the drivers of DVM and predicts that the relative roles of UV and visual predation pressure will vary systematically across a gradient of lake transparency. To assess this hypothesis, we conducted in situ mesocosm experiments in five different lakes: two lakes without fish and three lakes with fish that spanned a range of UV and visible light transparency. We used an open-bottomed mesocosm design that allowed for the direct manipulation of UV that did not constrain visual predators or the amplitude or timing of natural migrations. Consistent with the transparency-regulator hypothesis, we found that UV is an important driver of Daphnia DVM in highly UV transparent lakes with and without fish but not in low transparency systems. Our results also suggest that UV and visual predation pressure may interact in systems of intermediate transparency.
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  • 25
    Publication Date: 2015-09-22
    Description: Competition for resources can lead to species exclusion. However, this exclusion may be avoided if species show differential adaptation to physical environment. Empirical studies on competition are difficult when species are phylogenetically close and have complex life cycles. This is the case of B. plicatilis and B. manjavacas , two cryptic rotifer species differing in their salinity niches and in life-history traits related to sex and diapause. These differences have been suggested to promote the stable co-occurrence observed in natural populations of these species. However, in a previous empirical study, the outcome of competition between both species was always exclusion. Here, we theoretically explored the effect of complex life-history traits and salinity fluctuations on the long-term competitive outcome of B. plicatilis and B. manjavacas . We developed a model and simulated ecological scenarios combining different growing period lengths, levels of crossed induction of sex between species and salinity regimes. Results show that a fluctuating salinity regime, an intermediate length of growing season and a low level of crossed induction of sex are essential conditions to take into account to explain coexistence.
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  • 26
    Publication Date: 2015-09-22
    Description: Colonization of new habitats through dispersal of phytoplankton cysts might be limited, if resident populations outcompete invaders during germination. We reciprocally transferred Gonyostomum semen (Raphidophyceae) cysts from three lakes into native and foreign waters originating from the respective habitats. Germination rate and germling growth were impacted by water origin, but there was no preference for native water. Gonyostomum semen 's ability to germinate in different conditions might explain its expansion in northern Europe.
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  • 27
    Publication Date: 2015-09-22
    Description: Measuring zooplankton biomass and physiological rates is of paramount importance in biological oceanography in order to assess the role of this community in, e.g. carbon fluxes. Classical methods (incubations) are very time-consuming and cannot match the frequency of physical and chemical measurements. Attempting to solve this, a variety of methods (e.g. egg production, RNA/DNA ratio or enzyme activities) have been developed over the last decades. These methods also show uncertainties and hitherto only incubation methods have been widely accepted. Predictive equations relating physiological processes and body weight (bw) and temperature are a rough alternative, normally used to ascertain the role of these organisms in the oceanic ecosystem. However, using imaging systems and empirical relationships to determine bw allows the application of physiological models to each individual, obtaining reliable estimates for taxonomic groups and size classes. In this study, we developed predictive equations suitable for growth and respiration estimations in subtropical regions. In addition, biomass and physiological rates assessed from empirical equations in combination with an image-based system (ZooImage) were compared with standard and enzymatic methods, respectively. We observed a consistent agreement between methodologies, the former resulting in an inexpensive and faster procedure for the appraisal of biomass and community carbon fluxes at large spatial and temporal scales.
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  • 28
    Publication Date: 2015-09-22
    Description: Carbon-specific prey clearance and ingestion rates of 1.5-mm tentaculate larvae of the ctenophore Mnemiopsis leidyi increased linearly between 6 and 25°C but declined between 25 and 30°C. Both absolute (length) and carbon-specific growth rate increased linearly with increasing temperature. The latter was 0.87 d –1 at 25°C. Extremely low or negative growth rates observed at 6 and 30°C help define the thermal limits to population growth of this successful biological invader.
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  • 29
    Publication Date: 2015-09-22
    Description: We have supplemented available, concurrent measurements of fresh weight ( W , g) and body carbon (C, g) (46 individuals, 14 species) and nitrogen (N, g) (11 individuals, 9 species) of marine gelatinous animals with data obtained during the global ocean MALASPINA 2010 Expedition (totalling 267 individuals and 33 species for the W versus C data; totalling 232 individuals and 31 species for the N versus C data). We then used those data to test the allometric properties of the W versus C and N versus C relationships. Overall, gelatinous organisms contain 1.13 ± 1.57% of C (by weight, mean ± SD) in their bodies and show a C:N of 4.56 ± 2.46, respectively, although estimations can be improved by using separate conversion coefficients for the carnivores and the filter feeders. Reduced major axis regression indicates that W increases isometrically with C in the carnivores (cnidarians and ctenophores), implying that their water content can be described by a single conversion coefficient of 173.78 gW(g C) –1 , or a C content of 1.17 ± 1.90% by weight, although there is much variability due to the existence of carbon-dense species. In contrast, W increases more rapidly than C in the filter feeders (salps and doliolids), according to a power relationship W = 446.68C 1.54 . This exponent is not significantly different from 1.2, which is consistent with the idea that the watery bodies of gelatinous animals represent an evolutionary response towards increasing food capture surfaces, i.e. a bottom-up rather than a top-down mechanism. Thus, the available evidence negates a bottom-up mechanism in the carnivores, but supports it in the filter feeders. Last, N increases isometrically with C in both carnivores and filter feeders with C:N ratios of 3.89 ± 1.34 and 4.38 ± 1.21, respectively. These values are similar to those of compact, non-gelatinous organisms and reflect a predominantly herbivorous diet in the filter feeders, which is confirmed by a difference of one trophic level between filter feeders and carnivores, according to stable N isotope enrichment data.
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  • 30
    Publication Date: 2015-09-22
    Description: I explored mortality estimation for stage-structured populations, building on previous work that applied vertical life-table methods to populations of copepods. A new Bayesian approach for estimating mortality rates accounts for uncertainties in stage duration and number counted by stage, which have not been fully incorporated into previous analyses. This method assumes that mortality is similar among similar life stages. Results using simulated data show that realistic values of the standard deviation of stage duration and number of individuals counted result in reliable mortality estimates, though with wide confidence intervals. This uncertainty obscures variation in estimated mortality between successive stages and can also obscure bias due to violation of underlying assumptions such as that of a stable stage distribution. More importantly, the uncertainty calls into question many previous mortality estimates across pairs of life stages that do not account for these sources of uncertainty. The method was applied to an introduced population of the brackish-water cyclopoid copepod Limnoithona tetraspina in the San Francisco Estuary. Despite the uncertainties, results were interpretable: mortality was highest in nauplii and lowest in adults, probably because of high vulnerability of nauplii to invertebrate predators and low vulnerability of adults to fish predation.
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  • 31
    Publication Date: 2015-09-22
    Description: The strong La Niña of 2010–2011 provided an opportunity to investigate the ecological impacts of El Niño-Southern Oscillation on coastal plankton communities using the nine national reference stations around Australia. Based on remote sensing and across the entire Australian region 2011 (La Niña) was only modestly different from 2010 (El Niño) with the average temperature declining 0.2%, surface chlorophyll a up 3% and modelled primary production down 14%. Other changes included a poleward shift in Prochlorococcus and Synechococcus . Along the east coast, there was a reduction in salinity, increase in nutrients, Chlorophytes and Prasinophytes (taxa with chlorophyll b , neoxanthin and prasinoxanthin). The southwest region had a rise in the proportion of 19-hexoyloxyfucoxanthin; possibly coccolithophorids in eddies of the Leeuwin Current and along the sub-tropical front. Pennate diatoms increased, Ceratium spp. decreased and Scrippsiella spp. increased in 2011. Zooplankton biomass declined significantly in 2011. There was a reduction in the abundance of Calocalanus pavo and Temora turbinata and increases in Clausocalanus farrani , Oncaea scottodicarloi and Macrosetella gracilis in 2011. The changes in the plankton community during the strong La Niña of 2011 suggest that this climatic oscillation exacerbates the tropicalization of Australia.
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  • 32
    Publication Date: 2015-09-22
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  • 33
    Publication Date: 2015-09-22
    Description: Jellyfish are effective predators on mesozooplankton and release large amounts of dissolved organic matter. Nevertheless, jellyfish initiated trophic cascades and bottom-up influences impacting lower trophic levels have received limited attention. We conducted a mesocosm experiment to quantify simultaneous top-down and bottom-up effects of a common jellyfish, Cyanea capillata , in a natural plankton community during autumn. Treatments were 0, 2 or 5 jellyfish per 2.5 m 3 mesocosm, four replicates each, with initial additions of inorganic nutrients. Primary and bacterial production, species abundance and composition of several trophic levels and nutrient and carbon dynamics were followed during the 8-day experiment. Multivariate statistics and generalized additive mixed modelling were applied to test whether jellyfish carbon concentration (0–1.26 mg jellyC L –1 ) in the mesocosms affected the variables monitored. Unexpected negligible predatory impact of jellyfish on mesozooplankton was observed, potentially related to jellyfish senescence. Community compositions of bacteria, phytoplankton and mesozooplankton changed with time, but did not differ between treatments. However, nutrient regeneration by jellyfish was evident, and jellyfish had a positive impact on total and specific bacterial production, total primary production and the 〉10 µm chlorophyll a fraction. Bottom-up influences from abundant jellyfish could thus stimulate productivity in nutrient depleted autumnal surface waters.
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  • 34
    Publication Date: 2015-09-22
    Description: The feeding ecology of Blackfordia virginica was evaluated concurrently with their ecophysiological condition in a temperate estuary. The diet of B. virginica is composed not only of metazooplankton, as commonly observed for other jellyfish species, but also of phytoplankton, ciliates and detritus. This feeding behavior might explain their good nutritional condition and sustainable growth during bloom peaks, when zooplankton abundance has already decreased significantly.
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  • 35
    Publication Date: 2015-09-22
    Description: The pelagic dynamics of the cosmopolitan scyphozoan Aurelia sp . was investigated in three French Mediterranean lagoons, Thau, Berre and Bages-Sigean, which harbour resident populations. The annual cycles showed a common univoltine pattern in all lagoons where the presence of pelagic stages in the water column lasted ~8 months. Field observations showed a release of ephyrae in winter time followed by pronounced growth between April and July, when individuals reached the largest sizes, before disappearing from the water column. Maximum abundance of ephyrae and medusae were registered in Thau. Medusae abundance attained a maximum of 331 ind 100 m –3 in Thau, 18 ind 100 m –3 in Berre and 7 ind 100 m –3 in Bages-Sigean lagoons. Temperature and zooplankton abundance appeared as leading factors of growth, where Bages-Sigean showed the population with higher growth rates (2.66 mm day –1 ) and maximum size (32 cm), followed by Thau (0.57–2.56 mm day –1 ; 22.4 cm) and Berre (1.57–2.22 mm day –1 ; 17 cm). The quantification of environmental windows used by the species showed wider ranges than previously reported in the Mediterranean Sea, which suggests a wide ecological plasticity of Aurelia spp. populations in north-western Mediterranean lagoons.
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  • 36
    Publication Date: 2015-09-22
    Description: Two lobate ctenophores, Bolinopsis infundibulum and Mnemiopsis leidyi , occur in the North Sea. Stomach contents of field-collected B. infundibulum were recorded and clearance rates for cladocerans and copepods calculated. In starvation experiments, daily body carbon losses of 2.2 and 1.2% and total carbon content losses of 76 and 63% were observed for B. infundibulum (after 68 days) and M. leidyi (after 67 days), respectively.
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  • 37
    Publication Date: 2015-09-22
    Description: The ctenophore Mnemiopsis leidyi is characterized by high growth rates and a large reproductive capacity. However, reproductive dynamics are not yet well understood. Here, we present laboratory data on food-dependent egg production in M. leidyi and egg hatching time and success. Further, we report on the reproduction of laboratory-reared and field-caught animals during starvation. Our results show that the half-saturation zooplankton prey concentration for egg production is reached at food levels of 12–23 µgC L –1 , which is below the average summer food concentration encountered in invaded areas of northern Europe. Furthermore, starved animals continue to produce eggs for up to 12 days after cessation of feeding with high overall hatching success of 65–90%. These life history traits allow M. leidyi to thrive and reproduce in environments with varying food conditions and give it a competitive advantage under unfavourable conditions. This may explain why recurrent population blooms are observed and sustained in localized areas in invaded northern Europe, where water exchange is limited and zooplankton food resources are quickly depleted by M. leidyi . We suggest that these reproductive life history traits are key to its invasion success.
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  • 38
    Publication Date: 2015-09-22
    Description: Surface-dwelling colonies of Velella velella occur throughout tropical to cold-temperate oceans of the world and sometimes are stranded in masses along hundreds of kilometers of beaches. Large-scale blooms in the Western Mediterranean Sea in 2013 and 2014 allowed the study of diet, prey digestion times and predation rates. Gastrozooid content analyses showed that 59% of the 769 identified prey were euphausiid larvae (calytopsis and furcilia) captured at night. Copepods (41%), fish eggs (2.2%) and larvae (0.5%) were captured both at day and night. Digestion times at ambient temperature (~17°C) of calytopsis, furcilia and copepods were estimated to be 〉6.5, 4.4 and 3.9 h, respectively. Estimated prey consumption was substantially lower in 2014 than in 2013 (41 vs. 75 prey day –1 colony –1 ). Velella velella and other gelatinous species bloomed in the Mediterranean Sea and the northeastern Atlantic and Pacific oceans in 2013 and 2014. Because of the wide distribution of V. velella colonies, their mass occurrences, potential importance as predators and competitors of fish, additional production from symbiotic zooxanthellae and stranding on beaches, they could be important in open-ocean carbon cycling and in transport of pelagic production to landmasses.
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  • 39
    Publication Date: 2015-09-25
    Description: The white-rot fungus Heterobasidion parviporum Niemelä & Korhonen establishes a necrotrophic interaction with Norway spruce ( Picea abies (L.) H.Karst.) causing root and butt rot and growth losses in living trees. The interaction occurs first with the bark and the outer sapwood, as the pathogen enters the tree via wounds or root-to-root contacts. Later, when the fungus reaches the heartwood, it spreads therein creating a decay column, and the interaction mainly occurs in the inner sapwood where the tree creates a reaction zone. While bark and outer sapwood interactions are well studied, little is known about the nature of the transcriptional responses leading to the creation of a reaction zone. In this study, we sampled bark and sapwood both proximal and distal to the reaction zone in artificially inoculated and naturally infected trees. We quantified gene expression levels of candidate genes in secondary metabolite, hormone biosynthesis and signalling pathways using quantitative polymerase chain reaction. An up-regulation of mainly the phenylpropanoid pathway and jasmonic acid biosynthesis was found at the inoculation site, when inoculations were compared with wounding. We found that transcriptional responses in inner sapwood were similar to those reported upon infection through the bark. Our data suggest that the defence mechanism is induced due to direct fungal contact irrespective of the tissue type. Understanding the nature of these interactions is important when considering tree breeding-based resistance strategies to reduce the spread of the pathogen between and within trees.
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  • 40
    Publication Date: 2015-09-25
    Description: Global warming and associated decreases in summer rainfall may threaten tree vitality and forest productivity in many regions of the temperate zone in the future. One option for forestry to reduce the risk of failure is to plant genotypes which combine high productivity with drought tolerance. Growth experiments with provenances from different climates indicate that drought exposure can trigger adaptive drought responses in temperate trees, but it is not well known whether and to what extent regional precipitation reduction can increase the drought resistance of a species. We conducted a common garden growth experiment with five European beech ( Fagus sylvatica L.) populations from a limited region with pronounced precipitation heterogeneity (816–544 mm year –1 ), where phylogenetically related provenances grew under small to large water deficits. We grew saplings of the five provenances at four soil moisture levels (dry to moist) and measured ~30 morphological (leaf and root properties, root : shoot ratio), physiological (leaf water status parameters, leaf conductance) and growth-related traits (above- and belowground productivity) with the aim to examine provenance differences in the drought response of morphological and physiological traits and to relate the responsiveness to precipitation at origin. Physiological traits were more strongly influenced by provenance (one-third of the studied traits), while structural traits were primarily affected by water availability in the experiment (two-thirds of the traits). The modulus of leaf tissue elasticity reached much higher values late in summer in plants from moist origins resulting in more rapid turgor loss and a higher risk of hydraulic failure upon drought. While experimental water shortage affected the majority of morphological and productivity-related traits in the five provenances, most parameters related to leaf water status were insensitive to water shortage. Thus, plant morphology, and root growth in particular, did respond to reduced water availability with higher phenotypic plasticity than did physiology. We conclude that beech provenances exposed to different precipitation regimes have developed some genotypic differences with respect to leaf water status regulation, but these adaptations are associated with only minor adaptation in plant morphology and they do not affect the growth rate of the saplings.
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  • 41
    Publication Date: 2015-09-25
    Description: Many studies have demonstrated linkages between the occurrence of fog and ecophysiological functioning in cloud forests, but few have investigated hydraulic functioning as a determining factor that explains sharp changes in vegetation. The objective of this study was to compare the plant water status during cloud-immersed and non-immersed conditions and hydraulic vulnerability in branches and roots of species across a temperate, mountain fog ecotone. Because cloud forests are often dark, cool and very moist, we expected cloud forest species to have less drought-tolerant characteristics (i.e., lower P e and P 50 —the pressures required to induce a 12 and 50% loss in hydraulic conductivity, respectively) relative to non-cloud forest species in adjacent (lower elevation) forests. Additionally, due to the ability of cloud forest species to absorb cloud-fog water, we predicted greater improvements in hydraulic functioning during fog in cloud forest species relative to non-cloud forest species. Across the cloud forest ecotone, most species measured were very resistant to losses in conductivity with branch P 50 values from –4.5 to –6.0 MPa, hydraulic safety margins ( min – P 50 ) 〉1.5 MPa and low calculated hydraulic conductivity losses. Roots had greater vulnerabilities, with P 50 values ranging from –1.4 to –2.5 MPa, leading to greater predicted losses in conductivity (~20%). Calculated values suggested strong losses of midday leaf hydraulic conductance in three of the four species, supporting the hydraulic segmentation hypothesis. In both cloud forest and hardwood species, s were greater on foggy days than sunny days, demonstrating the importance of fog periods to plant water balance across fog regimes. Thus, frequent fog did not result in systemic changes in hydraulic functioning or vulnerability to embolism across our temperate cloud forest ecotone. Finally, roots functioned with lower hydraulic conductivity than branches, suggesting that they may serve as more sensitive indicators of hydraulic functioning in these mesic, foggy ecosystems.
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  • 42
    Publication Date: 2015-09-25
    Description: Climate warming is having an impact on distribution, acclimation and defence capability of plants. We compared the emission rate and composition of volatile organic compounds (VOCs) from silver birch ( Betula pendula (Roth)) provenances along a latitudinal gradient in a common garden experiment over the years 2012 and 2013. Micropropagated silver birch saplings from three provenances were acquired along a gradient of 7° latitude and planted at central (Joensuu 62°N) and northern (Kolari 67°N) sites. We collected VOCs emitted by shoots and assessed levels of herbivore damage of three genotypes of each provenance on three occasions at the central site and four occasions at the northern site. In 2012, trees of all provenances growing at the central site had higher total VOC emission rates than the same provenances growing at the northern site; in 2013 the reverse was true, thus indicating a variable effect of latitude. Trees of the southern provenance had lower VOC emission rates than trees of the central and northern provenances during both sampling years. However, northward or southward translocation itself had no significant effect on the total VOC emission rates, and no clear effect on insect herbivore damage. When VOC blend composition was studied, trees of all provenances usually emitted more green leaf volatiles at the northern site and more sesquiterpenes at the central site. The monoterpene composition of emissions from trees of the central provenance was distinct from that of the other provenances. In summary, provenance translocation did not have a clear effect in the short-term on VOC emissions and herbivory was not usually intense at the lower latitude. Our data did not support the hypothesis that trees growing at lower latitudes would experience more intense herbivory, and therefore allocate resources to chemical defence in the form of inducible VOC emissions.
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  • 43
    Publication Date: 2015-09-25
    Description: Virus-induced gene silencing (VIGS) has been shown to be an effective tool for investigating gene functions in herbaceous plant species, but has rarely been tested in trees. The establishment of a fast and reliable transformation system is especially important for woody plants, many of which are recalcitrant to transformation. In this study, we established a tobacco rattle virus (TRV)-based VIGS system for two Populus species, Populus euphratica and P.   x   canescens . Here, TRV constructs carrying a 266 bp or a 558 bp fragment of the phytoene desaturase (PDS) gene were Agrobacterium -infiltrated into leaves of the two poplar species. Agrobacterium -mediated delivery of the shorter insert, TRV2 -PePDS 266 , into the host poplars resulted in expected photobleaching in both tree species, but not the longer insert, PePDS 558 . The efficiency of VIGS was temperature-dependent, increasing by raising the temperature from 18 to 28 °C. The optimized TRV–VIGS system at 28 °C resulted in a high silencing frequency and efficiency up to 65–73 and 83–94%, respectively, in the two tested poplars. Moreover, syringe inoculation of Agrobacterium in 100 mM acetosyringone induced a more efficient silencing in the two poplar species, compared with other agroinfiltration methods, e.g., direct injection, misting and agrodrench. There were plant species-related differences in the response to VIGS because the photobleaching symptoms were more severe in P.   x   canescens than in P. euphratica. Furthermore, VIGS-treated P. euphratica exhibited a higher recovery rate (50%) after several weeks of the virus infection, compared with TRV-infected P.   x   canescens plants (20%). Expression stability of reference genes was screened to assess the relative abundance of PePDS mRNA in VIGS-treated P. euphratica and P.   x   canescens. PeACT7 was stably expressed in P. euphratica and UBQ-L was selected as the most suitable reference gene for P.   x   canescens using three different statistical approaches, geNorm, NormFinder and BestKeeper. Quantitative real-time PCR showed significant reductions in PDS transcripts (55–64%) in the photobleached leaves of both VIGS-treated poplar species. Our results demonstrate that the TRV-based VIGS provides a practical tool for gene functional analysis in Populus sp., especially in those poplar species which are otherwise recalcitrant to transformation.
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  • 44
    Publication Date: 2015-11-21
    Description: We present a motivated construction of large graphs not containing a given complete bipartite subgraph. The key insight is that the algebraic constructions yield very non-smooth probability distributions.
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  • 45
    Publication Date: 2015-11-21
    Description: In this paper, we give the first examples of connected Polish groups that have ample generics, answering a question of Kechris and Rosendal. We show that any Polish group with ample generics embeds into a connected Polish group with ample generics and that full groups of type III hyperfinite ergodic equivalence relations have ample generics. We also sketch a proof of the following result: the full group of any type III ergodic equivalence relation has topological rank 2.
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  • 46
    Publication Date: 2015-11-21
    Description: We establish an essentially optimal estimate for the ninth moment of the exponential sum having argument $\alpha x^3+\beta x$ . The first substantial advance in this topic for over 60 years, this leads to improvements in Heath-Brown's variant of Weyl's inequality, and other applications of Diophantine type.
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  • 47
    Publication Date: 2015-11-21
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  • 48
    Publication Date: 2015-11-21
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  • 49
    Publication Date: 2015-11-21
    Description: Latex, the cytoplasm of laticiferous cells localized in the inner bark of rubber trees ( Hevea brasiliensis Müll. Arg.), is collected by tapping the bark. Following tapping, latex flows out of the trunk and is regenerated, whereas in untapped trees, there is no natural exudation. It is still unknown whether the carbohydrates used for latex regeneration in tapped trees is coming from recent photosynthates or from stored carbohydrates, and in the former case, it is expected that latex carbon isotope composition of tapped trees will vary seasonally, whereas latex isotope composition of untapped trees will be more stable. Temporal variations of carbon isotope composition of trunk latex ( 13 C-L), leaf soluble compounds ( 13 C-S) and bulk leaf material ( 13 C-B) collected from tapped and untapped 20-year-old trees were compared. A marked difference in 13 C-L was observed between tapped and untapped trees whatever the season. Trunk latex from tapped trees was more depleted (1.6 on average) with more variable 13 C values than those of untapped trees. 13 C-L was higher and more stable across seasons than 13 C-S and 13 C-B, with a maximum seasonal difference of 0.7 for tapped trees and 0.3 for untapped trees. 13 C-B was lower in tapped than in untapped trees, increasing from August (middle of the rainy season) to April (end of the dry season). Differences in 13 C-L and 13 C-B between tapped and untapped trees indicated that tapping affects the metabolism of both laticiferous cells and leaves. The lack of correlation between 13 C-L and 13 C-S suggests that recent photosynthates are mixed in the large pool of stored carbohydrates that are involved in latex regeneration after tapping.
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  • 50
    Publication Date: 2015-11-21
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  • 51
    Publication Date: 2015-11-21
    Description: Recently it was shown by H. Guenancia and M. Păun that a singular metric satisfying the conical Kähler–Einstein equation with a simple normal crossing divisor is quasi-isometric to a conical metric along that divisor. In this article, we present an alternative proof of their theorem.
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  • 52
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2015-11-21
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  • 53
    Publication Date: 2015-11-21
    Description: We describe the spectrum of certain integration operators acting on generalized Fock spaces.
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  • 54
    Publication Date: 2015-11-21
    Description: One of the main results of a recent paper by Gross–Tosatti–Zhang establishes estimates on the collapsing of Ricci-flat Kähler metrics on holomorphic torus fibrations. We remove a projectivity assumption from these estimates and simplify some of the underlying analysis.
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  • 55
    Publication Date: 2015-11-21
    Description: Trees contain non-structural carbon (NSC), but it is unclear for how long these reserves are stored and to what degree they are used to support plant activity. We used radiocarbon ( 14 C) to show that the carbon (C) in stemwood NSC can achieve ages of several decades in California oaks. We separated NSC into two fractions: soluble (~50% sugars) and insoluble (mostly starch) NSC. Soluble NSC contained more C than insoluble NSC, but we found no consistent trend in the amount of either pool with depth in the stem. There was no systematic difference in C age between the two fractions, although ages increased with stem depth. The C in both NSC fractions was consistently younger than the structural C from which they were extracted. Together, these results indicate considerable inward mixing of NSC within the stem and rapid exchange between soluble and insoluble pools, compared with the timescale of inward mixing. We observed similar patterns in sympatric evergreen and deciduous oaks and the largest differences among tree stems with different growth rates. The 14 C signature of carbon dioxide (CO 2 ) emitted from tree stems was higher than expected from very recent photoassimilates, indicating that the mean age of C in respiration substrates included a contribution from C fixed years previously. A simple model that tracks NSC produced each year, followed by loss (through conversion to CO 2 ) in subsequent years, matches our observations of inward mixing of NSC in the stem and higher 14 C signature of stem CO 2 efflux. Together, these data support the idea of continuous accumulation of NSC in stemwood and that ‘vigor’ (growth rate) and leaf habit (deciduous vs evergreen) control NSC pool size and allocation.
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  • 56
    Publication Date: 2015-11-21
    Description: Gibberellins (GAs) are important regulators of plant shoot biomass growth, and GA 20-oxidase (GA20ox) is one of the major regulatory enzymes in the GA biosynthetic pathway. Previously, we showed that the expression levels of a putative GA20ox1 (i.e., PdGA20ox1 ) in stem tissue of 3-month-old seedlings of 12 families of Pinus densiflora were positively correlated with stem diameter growth across those same families growing in an even-aged 32-year-old pine forest (Park EJ, Lee WY, Kurepin LV, Zhang R, Janzen L, Pharis RP (2015) Plant hormone-assisted early family selection in Pinus densiflora via a retrospective approach. Tree Physiol 35:86–94). To further investigate the molecular function of this gene in the stem wood growth of forest trees, we produced transgenic poplar lines expressing PdGA20ox1 under the control of the 35S promoter (designated as 35S::PdGA20ox1). By age 3 months, most of the 35S::PdGA20ox1 poplar trees were showing an exceptional enhancement of stem wood growth, i.e., up to fourfold increases in stem dry weight, compared with the nontransformed control poplar plants. Significant increases in endogenous GA 1 , its immediate precursor (GA 20 ) and its catabolite (GA 8 ) in elongating internode tissue accompanied the increased stem growth in the transgenic lines. Additionally, the development of gelatinous fibers occurred in vertically grown stems of the 35S::PdGA20ox1 poplars. An analysis of the cell wall monosaccharide composition of the 35S::PdGA20ox1 poplars showed significant increases in xylose and glucose contents, indicating a qualitative increase in secondary wall depositions. Microarray analyses led us to find a total of 276 probe sets that were upregulated (using threefold as a threshold) in the stem tissues of 35S::PdGA20ox1 poplars relative to the controls. ‘Cell organization or biogenesis’- and ‘cell wall’-related genes were overrepresented, including many of genes that are involved in cell wall modification. Several transcriptional regulators, which positively regulate cell elongation through GA signaling, were also upregulated. In contrast, genes involved in defense signaling were appreciably downregulated in the 35S::PdGA20ox1 stem tissues, suggesting a growth versus defense trade-off. Taken together, our results suggest that PdGA20ox1 functions to promote stem growth and wood formation in poplar, probably by activating GA signaling while coincidentally depressing defense signaling.
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  • 57
    facet.materialart.
    Unknown
    Oxford University Press
    Publication Date: 2015-11-21
    Description: Bark beetles (Coleoptera: Curculionidae, Scolytinae) cause widespread tree mortality in coniferous forests worldwide. Constitutive and induced host defenses are important factors in an individual tree’s ability to survive an attack and in bottom-up regulation of bark beetle population dynamics, yet quantifying defense levels is often difficult. For example, in Pinus spp., resin flow is important for resistance to bark beetles but is extremely variable among individuals and within a season. While resin is produced and stored in resin ducts, the specific resin duct metrics that best correlate with resin flow remain unclear. The ability and timing of some pine species to produce induced resin is also not well understood. We investigated (i) the relationships between ponderosa pine ( Pinus ponderosa Lawson & C. Lawson) resin flow and axial resin duct characteristics, tree growth and physiological variables, and (ii) if mechanical wounding induces ponderosa pine resin flow and resin ducts in the absence of bark beetles. Resin flow increased later in the growing season under moderate water stress and was highest in faster growing trees. The best predictors of resin flow were nonstandardized measures of resin ducts, resin duct size and total resin duct area, both of which increased with tree growth. However, while faster growing trees tended to produce more resin, models of resin flow using only tree growth were not statistically significant. Further, the standardized measures of resin ducts, density and duct area relative to xylem area, decreased with tree growth rate, indicating that slower growing trees invested more in resin duct defenses per unit area of radial growth, despite a tendency to produce less resin overall. We also found that mechanical wounding induced ponderosa pine defenses, but this response was slow. Resin flow increased after 28 days, and resin duct production did not increase until the following year. These slow induced responses may allow unsuccessfully attacked or wounded trees to resist future bark beetle attacks. Forest management that encourages healthy, vigorously growing trees will also favor larger resin ducts, thereby conferring increased constitutive resistance to bark beetle attacks.
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  • 58
    Publication Date: 2015-11-21
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  • 59
    Publication Date: 2015-11-21
    Description: Temperature responses and sensitivity of photosynthesis ( A n _ T ) and respiration for leaves at different ages are crucial to modeling ecosystem carbon (C) cycles and productivity of evergreen forests. Understanding the mechanisms and processes of temperature sensitivity may further shed lights on temperature acclimation of photosynthesis and respiration with leaf aging. The current study examined temperature responses of photosynthesis and respiration of young leaves (YLs) (fully expanded in current growth season) and old leaves (OLs) (fully expanded in last growth season) of Quercus aquifolioides Rehder and E.H. Wilson in an alpine oak forest, southwestern China. Temperature responses of dark respiration ( R dark ), net assimilation ( A n ), maximal velocity of carboxylation ( V cmax ) and maximum rate of electron transport ( J max ) were significantly different between the two leaf ages. Those differences implied different temperature response parameters should be used for leaves of different ages in modeling vegetation productivity and ecosystem C cycles in Q. aquifolioides forests and other evergreen forests. We found that RuBP carboxylation determined the downward shift of A n _ T in OLs, while RuBP regeneration and the balance between Rubisco carboxylation and RuBP regeneration made little contribution. Sensitivity of stomatal conductance to vapor pressure deficit changed in OLs and compensated part of the downward shift. We also found that OLs of Q. aquifolioides had lower A n due to lower stomatal conductance, higher stomatal conductance limitation and deactivation of the biochemical processes. In addition, the balance between R dark and A n changed between OLs and YLs, which was represented by a higher R dark / A n ratio for OLs.
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  • 60
    Publication Date: 2015-11-21
    Description: Plants allocate carbon (C) to sink tissues depending on phenological, physiological or environmental factors. We still have little knowledge on C partitioning into various cellular compounds and metabolic pathways at various ecophysiological stages. We used compound-specific stable isotope analysis to investigate C partitioning of freshly assimilated C into tree compartments (needles, branches and stem) as well as into needle water-soluble organic C (WSOC), non-hydrolysable structural organic C (stOC) and individual chemical compound classes (amino acids, hemicellulose sugars, fatty acids and alkanes) of Norway spruce ( Picea abies ) following in situ 13 C pulse labelling 15 days after bud break. The 13 C allocation within the above-ground tree biomass demonstrated needles as a major C sink, accounting for 86% of the freshly assimilated C 6 h after labelling. In needles, the highest allocation occurred not only into the WSOC pool (44.1% of recovered needle 13 C) but also into stOC (33.9%). Needle growth, however, also caused high 13 C allocation into pathways not involved in the formation of structural compounds: (i) pathways in secondary metabolism, (ii) C-1 metabolism and (iii) amino acid synthesis from photorespiration. These pathways could be identified by a high 13 C enrichment of their key amino acids. In addition, 13 C was strongly allocated into the n -alkyl lipid fraction (0.3% of recovered 13 C), whereby 13 C allocation into cellular and cuticular exceeded that of epicuticular fatty acids. 13 C allocation decreased along the lipid transformation and translocation pathways: the allocation was highest for precursor fatty acids, lower for elongated fatty acids and lowest for the decarbonylated n -alkanes. The combination of 13 C pulse labelling with compound-specific 13 C analysis of key metabolites enabled tracing relevant C allocation pathways under field conditions. Besides the primary metabolism synthesizing structural cell compounds, a complex network of pathways consumed the assimilated 13 C and kept most of the assimilated C in the growing needles.
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  • 61
    Publication Date: 2015-11-21
    Description: Non-structural carbohydrates (NSC) in plant tissue are frequently quantified to make inferences about plant responses to environmental conditions. Laboratories publishing estimates of NSC of woody plants use many different methods to evaluate NSC. We asked whether NSC estimates in the recent literature could be quantitatively compared among studies. We also asked whether any differences among laboratories were related to the extraction and quantification methods used to determine starch and sugar concentrations. These questions were addressed by sending sub-samples collected from five woody plant tissues, which varied in NSC content and chemical composition, to 29 laboratories. Each laboratory analyzed the samples with their laboratory-specific protocols, based on recent publications, to determine concentrations of soluble sugars, starch and their sum, total NSC. Laboratory estimates differed substantially for all samples. For example, estimates for Eucalyptus globulus leaves (EGL) varied from 23 to 116 (mean = 56) mg g –1 for soluble sugars, 6–533 (mean = 94) mg g –1 for starch and 53–649 (mean = 153) mg g –1 for total NSC. Mixed model analysis of variance showed that much of the variability among laboratories was unrelated to the categories we used for extraction and quantification methods (method category R 2 = 0.05–0.12 for soluble sugars, 0.10–0.33 for starch and 0.01–0.09 for total NSC). For EGL, the difference between the highest and lowest least squares means for categories in the mixed model analysis was 33 mg g –1 for total NSC, compared with the range of laboratory estimates of 596 mg g –1 . Laboratories were reasonably consistent in their ranks of estimates among tissues for starch ( r = 0.41–0.91), but less so for total NSC ( r = 0.45–0.84) and soluble sugars ( r = 0.11–0.83). Our results show that NSC estimates for woody plant tissues cannot be compared among laboratories. The relative changes in NSC between treatments measured within a laboratory may be comparable within and between laboratories, especially for starch. To obtain comparable NSC estimates, we suggest that users can either adopt the reference method given in this publication, or report estimates for a portion of samples using the reference method, and report estimates for a standard reference material. Researchers interested in NSC estimates should work to identify and adopt standard methods.
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  • 62
    Publication Date: 2015-05-19
    Description: Zagier's well-known work on traces of singular moduli relates the coefficients of certain weakly holomorphic modular forms of weight $\frac {1}{2}$ to traces of values of the modular $j$ -function at imaginary quadratic points. A real quadratic analogue was recently studied by Duke, Imamoglu, and Tóth. They showed that the coefficients of certain weight $\frac {1}{2}$ mock modular forms \[f_D = \sum _{d 〉 0} a(d,D) q^d, \quad D 〉 0\] are given in terms of traces of cycle integrals of the $j$ -function. Their result applies to those coefficients $a(d,D)$ for which $dD$ is not a square. Recently, Bruinier, Funke, and Imamoglu employed a regularized theta lift to show that the coefficients $a(d,D)$ for square $dD$ are traces of regularized integrals of the $j$ -function. In the present paper, we provide an alternate approach to this problem. We introduce functions $j_{m,Q}$ (for $Q$ a quadratic form) which are related to the $j$ -function and show, by modifying the method of Duke, Imamoglu, and Tóth, that the coefficients for which $dD$ is a square are traces of cycle integrals of the functions $j_{m,Q}$ .
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  • 63
    Publication Date: 2015-05-19
    Description: For $q$ an odd prime power with $q 〉 169,$ we prove that there are always three consecutive primitive elements in the finite field $\mathbb {F}_{q}$ . Indeed, there are precisely eleven values of $q \leq 169$ for which this is false. For $4\leq n \leq 8,$ we present conjectures on the size of $q_{0}(n)$ such that $q 〉 q_{0}(n)$ guarantees the existence of $n$ consecutive primitive elements in $\mathbb {F}_{q}$ , provided that $\mathbb {F}_{q}$ has characteristic at least $n$ . Finally, we improve the upper bound on $q_{0}(n)$ for all $n\geq 3$ .
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  • 64
    Publication Date: 2015-05-19
    Description: Let ${{{\bf{G}}}}$ be a connected reductive group with connected center defined over ${{\mathbb {F}}}_q$ , with Frobenius morphism $F$ . We parameterize all of the real-valued irreducible complex characters of ${{{\bf{G}}}}^F$ using the Jordan decomposition of characters.
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  • 65
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    Unknown
    Oxford University Press
    Publication Date: 2015-05-19
    Description: By a 35-year-old theorem of Shelah, $\square _\lambda + \diamondsuit (\lambda ^+ )$ does not imply for regular uncountable cardinals $\lambda$ . Here, it is proved that $\square _\lambda + \diamondsuit (\lambda ^+ )$ is equivalent to for every singular cardinal $\lambda$ .
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  • 66
    Publication Date: 2015-05-19
    Description: Let $E = (E^0, E^1, r, s)$ be a topological graph with no sinks such that $E^0$ and $E^1$ are compact. We show that when $C^* (E)$ is finite, there is a natural isomorphism $C^* (E) \cong C(E^\infty ) \rtimes \mathbb {Z}$ , where $E^\infty$ is the infinite path space of $E$ and the action is given by the backwards shift on $E^\infty$ . Combining this with a result of Pimsner, we show the properties of being approximately finite-dimensional-embeddable, quasidiagonal, stably finite, and finite are equivalent for $C^* (E)$ and can be characterized by a natural ‘combinatorial’ condition on $E$ .
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  • 67
    Publication Date: 2015-05-19
    Description: We prove partial regularity of minimizers $u$ for $p(x)$ -energy functionals of the following type: \[{\mathcal E}(u)=\int _\Omega (A^{\alpha \beta }_{ij}(x,u)D_{\alpha }u^i D_{\beta }u^j)^{p(x)/2}\,d x,\] assuming that $A^{\alpha \beta }_{ij}(x,u)$ and $p(x)$ are sufficiently smooth and that $p(x)$ is subquadratic. We prove that $u\in C^{0,\alpha }(\Omega _0)$ for some $\alpha \in (0,1)$ and an open set $\Omega _0 \subset \Omega$ with ${\mathcal H}^{m-\gamma _1}(\Omega -\Omega _0)=0$ , where ${\mathcal H}^s$ denotes the $s$ -dimensional Hausdorff measure and $\gamma _1=\inf _{\Omega } p(x)$ .
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  • 68
    Publication Date: 2015-05-19
    Description: By adopting a new approach to the analysis of the density of $p$ -adic solutions arising in applications of the circle method, we show that under modest conditions the existence of non-trivial $p$ -adic solutions suffices to establish positivity of the singular series. This improves on earlier approaches due to Davenport, Schmidt and others, and allows us to establish an asymptotic formula for the number of simultaneous zeros of non-singular pairs of cubic forms in at least $131$ variables. As a by-product, we obtain a version of Hensel's lemma for linear spaces.
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  • 69
    Publication Date: 2015-05-19
    Description: Let $\{\phi _t\}_{t\geq 0}$ be a semigroup of holomorphic self-maps of the unit disk. We assume that the Denjoy–Wolff point of the semigroup is the point $1$ ; so $1$ is the unique attractive boundary fixed point of the semigroup. We further assume that for all $t 〉 0$ , $\phi _t^\prime (1)\lt 1$ (angular derivative), namely the semigroup is hyperbolic. We prove then that the rate of convergence of the semigroup to the point $1$ , as $t\to + \infty$ , is exponential with exponent arbitrarily close to $-\pi t/\nu (\Omega )$ , where $\nu (\Omega )$ is the width of the smallest strip containing the associated planar domain $\Omega$ . We also prove that the trajectories of the semigroup approach the point $1$ in a monotonic way.
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  • 70
    Publication Date: 2015-05-19
    Description: The McCool group, denoted $P\Sigma _n$ , is the group of pure symmetric automorphisms of a free group of rank $n$ . A presentation of the cohomology algebra $H^* (P\Sigma _n, {{\mathbb Q}})$ was determined by Jensen, McCammond, and Meier. We prove that $H^* (P\Sigma _n, {{\mathbb Q}})$ is a non-Koszul algebra for $n \geq 4$ , which answers a question of Cohen and Pruidze. We also study the enveloping algebra of the graded Lie algebra associated to the lower central series of $P\Sigma _n$ , and prove that it has two natural decompositions as a smash product of algebras.
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  • 71
    Publication Date: 2015-05-19
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  • 72
    Publication Date: 2015-05-19
    Description: Let ${\mathcal {H}ol}({\mathbb D})$ denote the space of holomorphic functions on the unit disk ${\mathbb D}$ . We characterize those radial weights ${w}$ on ${\mathbb D}$ for which there exist functions $f, g\in {\mathcal {H}ol}({\mathbb D})$ such that the sum $|f| + |g|$ is equivalent to ${w}$ . Also, we obtain similar results in several complex variables for circular, strictly convex domains with smooth boundary.
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  • 73
    Publication Date: 2015-05-19
    Description: We use the Dandelin–Gallucci theorem to give a proof of Wedderburn's little theorem that every finite division ring is commutative, and the proof is geometric in the sense that the non-geometric concepts employed are of an elementary nature. As a consequence, we obtain a geometric proof that a finite Desarguesian projective space is Pappian.
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  • 74
    Publication Date: 2015-05-19
    Description: We study the stability of the standing wave solutions of a Gross–Pitaevskii equation describing Bose–Einstein condensation of dipolar quantum gases and characterize their orbit. As an intermediate step, we consider the corresponding constrained minimization problem and establish existence, symmetry and uniqueness of the ground state solutions.
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  • 75
    Publication Date: 2015-05-19
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  • 76
    Publication Date: 2015-05-19
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  • 77
    Publication Date: 2015-05-24
    Description: Several hypotheses exist that describe phytoplankton spring blooms in temperate and subpolar oceans: the critical depth, shoaling mixed layer (ML), critical turbulence, onset of stratification and disturbance-recovery hypotheses. These theories appear to be mutually exclusive and none of them describe the annual cycle of phytoplankton biomass. Here, we present a model of the annual cycle in phytoplankton that recognizes that phytoplankton are not always mixed throughout the so-called ML, and that it is important to distinguish between the surface biomass and depth-integrated phytoplankton. Once these important distinctions are made, the annual cycles and blooms in surface and depth-integrated phytoplankton can be described straightforwardly in terms of the physical drivers and biotic responses.
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  • 78
    Publication Date: 2015-05-24
    Description: Impacts of climate change on marine ecosystems have become increasingly apparent during the past decades. In consequence, it is necessary to study how these alterations can affect the habitat and population dynamics of key organisms. Here we used a video plankton recorder (VPR) to investigate the effect of climate-induced habitat changes on the copepod Pseudocalanus acuspes , a key species in the Baltic Sea. The VPR allowed the observation of reproducing copepod females, identified by attached egg sacs, usually lost during traditional net sampling. We compared the small-scale distribution of our target species during non-inflow and inflow periods. Our study showed a large increase in the availability of suitable habitat after the inflow event due to improved oxygen and salinity conditions. Furthermore, increased copepod abundance and a deeper and wider vertical distribution was apparent. Applying a new approach to estimate in situ egg production rates from VPR-derived images revealed no changes. However, we observed increased offspring survival with improved hydrographic conditions pointing toward the importance of salinity and oxygen for the population dynamics of Baltic P. acuspes . Our observations illustrate the strong impact that climate change can have on the habitat of key marine ecosystem species, important for overall ecosystem dynamics.
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  • 79
    Publication Date: 2015-05-24
    Description: Research on nutrient controls of planktonic productivity tends to focus on a few standard fractions of inorganic or total nitrogen (N) and phosphorus (P). However, there is a wide range in the degree to which land-derived dissolved organic nutrients can be assimilated by biota. Thus, in systems where such fractions form a majority of the macronutrient resource pool, including many boreal inland waters and estuaries, our understanding of bacterio- and phytoplankton production dynamics remains limited. To adequately predict aquatic productivity in a changing environment, improved standard methods are needed for determining the sizes of active (bioavailable) pools of N, P and organic carbon (C). A synthesis of current knowledge suggests that variation in the C:N:P stoichiometry of bioavailable resources is associated with diverse processes that differentially influence the individual elements across space and time. Due to a generally increasing organic nutrient bioavailability from C to N to P, we hypothesize that the C:N and N:P of bulk resources often vastly overestimates the corresponding ratios of bioavailable resources. It is further proposed that basal planktonic production is regulated by variation in the source, magnitude and timing of terrestrial runoff, through processes that have so far been poorly described.
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  • 80
    Publication Date: 2015-05-24
    Description: Understanding the factors that regulate the abundance, size structure and community structure of cladocerans is an important goal of aquatic ecologists. While both top-down and bottom-up factors help to structure cladoceran communities, there may be interactions between these factors. We conducted a mesocosm study to determine how alien large-bodied Daphnia , zebra mussels and fish affected cladoceran community and size structure. We found that large-bodied Daphnia reduced algal resources and the fecundity of smaller bodied cladocerans. Fish removed the large-bodied Daphnia magna from the mesocosms and shifted the cladoceran community to a smaller body size. Fish also appeared to promote increases in cladoceran diversity through the coexistence of several smaller bodied taxa. In contrast, zebra mussels increased cyanobacteria and helped to promote the success of the alien Daphnia , but reduced the biomass of small-bodied cladocerans. Zebra mussels reduced the carbon (C):phosphorus (P) ratio of the phytoplankton in the mesocosms which may have favored the relatively P-limited Daphnia . Combined, our results highlight the complex interactions of multiple factors that help to regulate cladoceran community and size structure.
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  • 81
    Publication Date: 2015-05-24
    Description: In freshwater systems, Daphnia has been demonstrated to show adaptive responses following the light–dark cycle. The adjustment of these responses to the change of day and night is probably transmitted via the hormone melatonin. The rate-limiting enzyme in melatonin synthesis is the arylalkylamine N-transferase (AANAT). We identified three genes coding for insect-like AANATs in Daphnia , of which we measured the gene expression in an ecologically relevant light–dark cycle. We demonstrated that Daphnia 's insect-like AANAT gene expression oscillated in a daily manner, and that the highest peak of expression after the onset of darkness was followed by a peak of melatonin production at midnight. Moreover, we could show an oscillation of endogenous melatonin synthesis in Daphnia . In most organisms, melatonin synthesis is due to rhythmic expression of genes of the circadian clock, since transcription of aanat s is directly linked to a circadian transcription factor. We could demonstrate that putative clock genes and insect-like AANAT genes of Daphnia were equally expressed. Therefore, we propose that melatonin synthesis is coupled to the expression of Daphnia clock genes, and that insect-like AANATs of crustaceans have a similar function as AANATs of vertebrates: The initiation of melatonin synthesis. In future studies with Daphnia , it will be necessary to take the time of day into account since melatonin concentrations might influence stress responses.
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  • 82
    Publication Date: 2015-05-24
    Description: It has been hypothesized that terrestrial particulate organic matter (t-POM) makes important contributions to Daphnia production in some lakes. We conducted a series of feeding experiments to explore the fatty acid responses in Daphnia to diets comprised of different terrestrial resources (i.e. Alnus rubra , Phragmites australis , Betula nana and Betula pendula ) and mixed diets with terrestrial and phytoplankton ( Scenedesmus or Cryptomonas ) resources. When fed 100% phytoplankton, Daphnia had very similar ( r 2 〉 0.80) fatty acid profiles to their diets, whereas Daphnia that consumed t-POM diets had weak correlations ( r 2 = 0.002–0.56) with the corresponding diet sources. Unusual 16 carbon chain polyunsaturated fatty acids (16:26, 16:33 and 16:43), linoleic acid (18:26) and α-linolenic acid (18:33) were diagnostic fatty acids for Scenedesmus and Daphnia that consumed this alga. Stearidonic acid (18:43) and eicosapentaenoic acid (20:53) were diagnostic for Cryptomonas and Daphnia that consumed this diet. All of the t-POM resources were characterized by a high content of saturated fatty acids (SAFA; 79 ± 12%), especially the diagnostic long-chain SAFA (20:0, 22:0, 24:0, 26:0, 28:0). Daphnia that consumed t-POM assimilated very little of these terrestrial biomarkers, but the shorter chain SAFA 16:0 and 18:0 were very prevalent in juvenile and adult Daphnia that consumed terrestrial plant matter. The -3:-6 ratios were distinctive between terrestrial (0.3–1.6) and phytoplankton resources (3–15), and this ratio in Daphnia was strongly associated with their diets ( r 2 = 0.88). These results suggest that Daphnia , and perhaps zooplankton in general, preferentially retain algae-derived 3 fatty acids, and low -3:-6 ratios in Daphnia indicate a mainly terrestrial diet or poor nutritional condition.
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  • 83
    Publication Date: 2015-05-24
    Description: In order to trace community dynamics and reticulate evolution in hybrid species complexes, long-term comparative studies of natural populations are necessary. Such studies require the development of tools for fine-scale genetic analyses. In the present study, we developed species-diagnostic SNP-based markers for hybridizing freshwater crustaceans: the multispecies Daphnia longispina complex. Specifically, we took advantage of transcriptome data from a key species of this hybrid complex, the annotated genome of a related Daphnia species and well-defined reference genotypes from three parental species. Altogether eleven nuclear loci with several species-specific SNP sites were identified in sequence alignments of these reference genotypes from three parental species and their interspecific hybrids. A PCR-RFLP assay was developed for cost-efficient large population screening by SNP-based genotyping. Taxon assignment by RFLP patterns was nearly perfectly concordant with microsatellite genotyping across several screened populations from Europe. Finally, we were able to amplify two short regions of these loci in formaldehyde-preserved samples dating back to the year 1960. The species-specific SNP-based markers developed here provide valuable tools to study hybridization over time, including the long-term impact of various environmental factors on hybridization and biodiversity changes. SNP-based genotyping will finally allow eco-evolutionary dynamics to be revealed at different time scales.
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  • 84
    Publication Date: 2016-07-21
    Description: We determine the automorphism group of the split Cartan modular curves $X_{{\rm split}}(p)$ for all primes $p$ .
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  • 85
    Publication Date: 2016-07-21
    Description: We give a necessary and sufficient condition for a hyperbolic Coxeter group with planar nerve to have Sierpiłski curve as its Gromov boundary.
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  • 86
    Publication Date: 2016-08-03
    Description: We employed the warm temperate conifer Cunninghamia lanceolata (Lamb.) Hook. as a model of plantation forest species to investigate ecophysiological responses to root treatments (control (0%), and ~25, 50 or 75% of the initial root mass) under well-watered and water-limited conditions. Our results indicated that total root dry mass accumulation was negatively associated with the severity of root pruning, but there was evidence of multiple compensatory responses. The plants exhibited higher instantaneous and long-term (assessed by carbon isotope composition, 13 C) water-use efficiency in pruning treatments, especially under low water availability. Root pruning also increased the fine root/total root mass ratio, specific root length and fine root vitality in both water availability treatments. As a result of the compensatory responses, under well-watered conditions, height, stem dry mass accumulation, leaf/fine root biomass ratio (L/FR), transpiration rate, photosynthetic capacity and photosynthetic nitrogen-use efficiency ( E N ) were the highest under 25% pruning. Yet, all these traits except L/FR and foliage nitrogen content were severely reduced under 75% pruning. Drought negatively affected growth and leaf gas exchange rates, and there was a greater negative effect on growth, water potential, gas exchange and E N when 〉25% of total root biomass was removed. The stem/aboveground mass ratio was the highest under 25% pruning in both watering conditions. These results indicate that the responses to root severance are related to the excision intensity and soil moisture content. A moderate root pruning proved to be an effective means to improve stem dry mass accumulation.
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  • 87
    Publication Date: 2016-08-03
    Description: The timing of wood formation is crucial to determine how environmental factors affect tree growth. The long-lived bristlecone pine ( Pinus longaeva D. K. Bailey) is a foundation treeline species in the Great Basin of North America reaching stem ages of about 5000 years. We investigated stem cambial phenology and radial size variability to quantify the relative influence of environmental variables on bristlecone pine growth. Repeated cellular measurements and half-hourly dendrometer records were obtained during 2013 and 2014 for two high-elevation stands included in the Nevada Climate-ecohydrological Assessment Network. Daily time series of stem radial variations showed rehydration and expansion starting in late April–early May, prior to the onset of wood formation at breast height. Formation of new xylem started in June and lasted until mid-September. There were no differences in phenological timing between the two stands, or in the air and soil temperature thresholds for the onset of xylogenesis. A multiple logistic regression model highlighted a separate effect of air and soil temperature on xylogenesis, the relevance of which was modulated by the interaction with vapor pressure and soil water content. While air temperature plays a key role in cambial resumption after winter dormancy, soil thermal conditions coupled with snowpack dynamics also influence the onset of wood formation by regulating plant–soil water exchanges. Our results help build a physiological understanding of climate–growth relationships in P. longaeva , the importance of which for dendroclimatic reconstructions can hardly be overstated. In addition, environmental drivers of xylogenesis at the treeline ecotone, by controlling the growth of dominant species, ultimately determine ecosystem responses to climatic change.
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  • 88
    Publication Date: 2016-08-03
    Description: Seasonal analyses of cambial cell production and day-by-day stem radial increment can help to elucidate how climate modulates wood formation in conifers. Intra-annual dynamics of wood formation were determined with microcores and dendrometers and related to climatic signals in Norway spruce ( Picea abies (L.) Karst.). The seasonal dynamics of these processes were observed at two sites of different altitude, Savignano (650 m a.s.l.) and Lavazè (1800 m a.s.l.) in the Italian Alps. Seasonal dynamics of cambial activity were found to be site specific, indicating that the phenology of cambial cell production is highly variable and plastic with altitude. There was a site-specific trend in the number of cells in the wall thickening phase, with the maximum cell production in early July (DOY 186) at Savignano and in mid-July (DOY 200) at Lavazè. The formation of mature cells showed similar trends at the two sites, although different numbers of cells and timing of cell differentiation were visible in the model shapes; at the end of ring formation in 2010, the number of cells was four times higher at Savignano (106.5 cells) than at Lavazè (26.5 cells). At low altitudes, microcores and dendrometers described the radial growth patterns comparably, though the dendrometer function underlined the higher upper asymptote of maximum growth in comparison with the cell production function. In contrast, at high altitude, these functions exhibited different trends. The best model was obtained by fitting functions of the Gompertz model to the experimental data. By combining radial growth and cambial activity indices we defined a model system able to synchronize these processes. Processes of adaptation of the pattern of xylogenesis occurred, enabling P. abies to occupy sites with contrasting climatic conditions. The use of daily climatic variables in combination with plant functional traits obtained by sensors and/or destructive sampling could provide a suitable tool to better investigate the effect of disturbances on response strategies in trees and, consequently, contribute to improving our prediction of tree growth and species resilience based on climate scenarios.
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  • 89
    Publication Date: 2016-08-03
    Description: In deciduous trees growing in temperate forests, bud break and growth in spring must rely on intrinsic carbon (C) reserves. Yet it is unclear whether growth and C storage occur simultaneously, and whether starch C in branches is sufficient for refoliation. To test in situ the relationships between growth, phenology and C utilization, we monitored stem growth, leaf phenology and stem and branch nonstructural carbohydrate (NSC) dynamics in three deciduous species: Carpinus betulus L., Fagus sylvatica L. and Quercus petraea (Matt.) Liebl. To quantify the role of NSC in C investment into growth, a C balance approach was applied. Across the three species, 〉95% of branchlet starch was consumed during bud break, confirming the importance of C reserves for refoliation in spring. The C balance calculation showed that 90% of the C investment in foliage (7.0–10.5 kg tree –1 and 5–17 times the C needed for annual stem growth) was explained by simultaneous branchlet starch degradation. Carbon reserves were recovered sooner than expected, after leaf expansion, in parallel with stem growth. Carpinus had earlier leaf phenology (by ~25 days) but delayed cambial growth (by ~15 days) than Fagus and Quercus , the result of a competitive strategy to flush early, while having lower NSC levels.
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  • 90
    Publication Date: 2016-08-03
    Description: Fungal infections result in decreases in photosynthesis, induction of stress and signaling volatile emissions and reductions in constitutive volatile emissions, but the way different physiological processes scale with the severity of infection is poorly known. We studied the effects of infection by the obligate biotrophic fungal pathogen Melampsora larici-populina Kleb., the causal agent of poplar leaf rust disease, on photosynthetic characteristics, and constitutive isoprene and induced volatile emissions in leaves of Populus balsamifera var. suaveolens (Fisch.) Loudon. exhibiting different degrees of damage. The degree of fungal damage, quantified by the total area of chlorotic and necrotic leaf areas, varied between 0 (noninfected control) and ~60%. The rates of all physiological processes scaled quantitatively with the degree of visual damage, but the scaling with damage severity was weaker for photosynthetic characteristics than for constitutive and induced volatile release. Over the whole range of damage severity, the net assimilation rate per area ( A A ) decreased 1.5-fold, dry mass per unit area 2.4-fold and constitutive isoprene emissions 5-fold, while stomatal conductance increased 1.9-fold and dark respiration rate 1.6-fold. The emissions of key stress and signaling volatiles (methanol, green leaf volatiles, monoterpenes, sesquiterpenes and methyl salicylate) were in most cases nondetectable in noninfested leaves, and increased strongly with increasing the spread of infection. The moderate reduction in A A resulted from the loss of photosynthetically active biomass, but the reduction in constitutive isoprene emissions and the increase in induced volatile emissions primarily reflected changes in the activities of corresponding biochemical pathways. Although all physiological alterations in fungal-infected leaves occurred in a stress severity-dependent manner, modifications in primary and secondary metabolic pathways scaled differently due to contrasting operational mechanisms.
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  • 91
    Publication Date: 2016-08-03
    Description: Current knowledge of the genetic mechanisms underlying the inheritance of photosynthetic activity in forest trees is generally limited, yet it is essential both for various practical forestry purposes and for better understanding of broader evolutionary mechanisms. In this study, we investigated genetic variation underlying selected chlorophyll a fluorescence (ChlF) parameters in structured populations of Scots pine ( Pinus sylvestris L.) grown on two sites under non-stress conditions. These parameters were derived from the OJIP part of the ChlF kinetics curve and characterize individual parts of primary photosynthetic processes associated, for example, with the exciton trapping by light-harvesting antennae, energy utilization in photosystem II (PSII) reaction centers (RCs) and its transfer further down the photosynthetic electron-transport chain. An additive relationship matrix was estimated based on pedigree reconstruction, utilizing a set of highly polymorphic single sequence repeat markers. Variance decomposition was conducted using the animal genetic evaluation mixed-linear model. The majority of ChlF parameters in the analyzed pine populations showed significant additive genetic variation. Statistically significant heritability estimates were obtained for most ChlF indices, with the exception of DI 0 /RC, D0 and P0 ( F v / F m ) parameters. Estimated heritabilities varied around the value of 0.15 with the maximal value of 0.23 in the ET 0 /RC parameter, which indicates electron-transport flux from Q A to Q B per PSII RC. No significant correlation was found between these indices and selected growth traits. Moreover, no genotype  x  environment interaction (G  x  E) was detected, i.e., no differences in genotypes’ performance between sites. The absence of significant G  x  E in our study is interesting, given the relatively low heritability found for the majority of parameters analyzed. Therefore, we infer that polygenic variability of these indices is selectively neutral.
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  • 92
    Publication Date: 2016-08-03
    Description: The ethylene response factor (ERF) family is one of the largest plant-specific transcription factor families, playing an important role in plant development and response to stresses. The ERF76 gene is a member of the poplar ERF transcription factor gene family. First, we validated that the ERF76 gene expressed in leaf and root tissues is responsive to salinity stress. We then successfully cloned the ERF76 cDNA fragment containing an open reading frame from di-haploid Populus simonii   x   Populus nigra and proved that ERF76 protein is targeted to the nucleus. Finally, we transferred the gene into the same poplar clone by the Agrobacterium -mediated leaf disc method. Using both RNA-Seq and reverse transcription-quantitative polymerase chain reaction, we validated that expression level of ERF76 is significantly higher in transgenic plants than that in the nontransgenic control. Using RNA-Seq data, we have identified 375 genes that are differentially expressed between the transgenic plants and the control under salt treatment. Among the differentially expressed genes, 16 are transcription factor genes and 45 are stress-related genes, both of which are upregulated significantly in transgenic plants, compared with the control. Under salt stress, the transgenic plants showed significant increases in plant height, root length, fresh weight, and abscisic acid (ABA) and gibberellin (GA) concentration compared with the control, suggesting that overexpression of ERF76 in transgenic poplar upregulated the expression of stress-related genes and increased the ability of ABA and GA biosynthesis, which resulted in stronger tolerance to salt stress.
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  • 93
    Publication Date: 2016-08-03
    Description: Summer droughts are likely to increase in frequency and intensity across Europe, yet long-lived trees may have a limited ability to tolerate drought. It is therefore critical that we improve our understanding of phenotypic plasticity to drought in natural populations for ecologically and economically important trees such as Populus nigra L. A common garden experiment was conducted using ~500 wild P. nigra trees, collected from 11 river populations across Europe. Phenotypic variation was found across the collection, with southern genotypes from Spain and France characterized by small leaves and limited biomass production. To examine the relationship between phenotypic variation and drought tolerance, six genotypes with contrasting leaf morphologies were subjected to a water deficit experiment. ‘North eastern’ genotypes were collected at wet sites and responded to water deficit with reduced biomass growth, slow stomatal closure and reduced water use efficiency (WUE) assessed by 13 C. In contrast, ‘southern’ genotypes originating from arid sites showed rapid stomatal closure, improved WUE and limited leaf loss. Transcriptome analyses of a genotype from Spain (Sp2, originating from an arid site) and another from northern Italy (Ita, originating from a wet site) revealed dramatic differences in gene expression response to water deficit. Transcripts controlling leaf development and stomatal patterning, including SPCH , ANT , ER , AS1 , AS2 , PHB , CLV1 , ERL1–3 and TMM , were down-regulated in Ita but not in Sp2 in response to drought.
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  • 94
    Publication Date: 2016-08-03
    Description: Isoprene is the most abundant type of nonmethane, biogenic volatile organic compound in the atmosphere, and it is produced mainly by terrestrial plants. The tropical tree species Ficus septica Burm. F. (Rosales: Moraceae) has been shown to cease isoprene emissions when exposed to temperatures of 12 °C or lower and to re-induce isoprene synthesis upon subsequent exposure to temperatures of 30 °C or higher for 24 h. To elucidate the regulation of genes underlying the disabling and then induction of isoprene emission during acclimatization to ambient temperature, we conducted gene expression analyses of F. septica plants under changing temperature using quantitative real-time polymerase chain reaction and western blotting. Transcription levels were analyzed for 17 genes that are involved in metabolic pathways potentially associated with isoprene biosynthesis, including isoprene synthase ( ispS ). The protein levels of ispS were also measured. Changes in transcription and protein levels of the ispS gene, but not in the other assessed genes, showed identical temporal patterns to isoprene emission capacity under the changing temperature regime. The ispS protein levels strongly and positively correlated with isoprene emission capacity ( R 2  = 0.92). These results suggest that transcriptional regulation of ispS gave rise to the temporal variation in isoprene emission capacity in response to changing temperature.
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  • 95
    Publication Date: 2016-08-03
    Description: Clonal integration between ramets can be an ecological advantage of clonal plant species in environments where resources are patchily distributed. We investigated physiological integration among Populus balsamifera L. ramets under drought stress in order to demonstrate water sharing between connected ramets. Pairs of connected ramets were grown in separate pots in the greenhouse where half of ramets had the parental root connection severed and half were left intact. Drought stress was applied to one ramet, and growth, specific leaf area (SLA), net photosynthesis, stomatal conductance, leaf water potential and carbon isotopic composition ( 13 C) were measured after an 8-week growing period. Droughted ramets connected to watered ramets were able to maintain high gas exchange activity and water potential, similar to watered ramets. Leaf water potential and SLA results showed that the root connection was more beneficial for proximal compared with distal ramets. The parental root connection also allowed droughted ramets to discriminate more against 13 C compared with severed ramets. In conclusion, this study shows compelling evidence of physiological integration of connected P. balsamifera ramets through water sharing.
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  • 96
    Publication Date: 2016-07-21
    Description: We prove that an artin algebra $A$ is of finite representation type if and only if almost all finitely generated indecomposable $A$ -modules are cycle-finite. Moreover, we prove that every cycle-finite module category of an artin algebra $A$ of infinite representation type contains infinitely many left stable and infinitely many right stable directing modules. In particular, the main results of the paper provide solution of the open problem concerning infinity of directing modules over cycle-finite artin algebras of infinite representation type.
    Print ISSN: 0024-6093
    Electronic ISSN: 1469-2120
    Topics: Mathematics
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  • 97
    Publication Date: 2016-07-21
    Description: We show that binary Toeplitz flows can be interpreted as Delone dynamical systems induced by model sets and analyse the quantitative relations between the respective system parameters. This has a number of immediate consequences for the theory of model sets. In particular, we use our results in combination with special examples of irregular Toeplitz flows from the literature to demonstrate that irregular proper model sets may be uniquely ergodic and do not need to have positive entropy. This answers questions by Schlottmann and Moody.
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  • 98
    Publication Date: 2016-07-21
    Description: We prove a general version of the Hölder inequality for symmetric operator spaces and symmetric functionals (traces) on such spaces, answering some open questions in the literature. We also prove a general version of the result establishing the trace property of the non-commutative integral defined via an arbitrary positive symmetric functional on a symmetric operator space. Our main tool is the so-called uniform Hardy–Littlewood majorization.
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  • 99
    Publication Date: 2016-07-21
    Description: We lift the classical theorem of Arnol'd on homological stability for configuration spaces of the plane to the motivic world. More precisely, we prove that the schemes of unordered configurations of points in the affine line satisfy stability with respect to the motivic $t$ -structure on mixed Tate motives.
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  • 100
    Publication Date: 2016-07-21
    Description: We give an application of our earlier results concerning the quasiconformal extension of a germ of a conformal map to establish that in two dimensions, the equipotential level lines of a capacitor are quasicircles whose distortion depends only on the capacity and the level. As an application, we find that given disjoint, nonseparating and nontrivial continua $E$ and $F$ in $\hat {\mathbb {C}}=\mathbb {C}\cup \{\infty \}$ , the closed hyperbolic geodesic generating the fundamental group $\pi _1(\hat {\mathbb {C}}\setminus (E\cup F) ) \cong \mathbb {Z}$ is a $K$ -quasicircle separating $E$ and $F$ with explicit distortion bound depending only on the capacity of $\hat {\mathbb {C}}^{\vphantom {A^A}}\setminus (E\cup F)$ . This result is then extended to obtain distortion bounds on a quasicircle representing a given homotopy class of a simple closed curve in a planar domain. Finally, we are able to use these results to show that a simple closed hyperbolic geodesic in a planar domain is a quasicircle with a distortion bound depending explicitly, and only, on its length.
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