Skip to main content
Log in

Diversity ofFrankia strains isolated from a single alder stand

  • Published:
Plant and Soil Aims and scope Submit manuscript

Abstract

One hundredFrankia strains isolated from variousAlnus species in a single alder stand were tested for plasmid presence. Plasmid DNA was observed in five of the frankiae strains and was analyzed. We found that plasmids with a similar molecular weight exhibited in fact minor divergences in restriction patterns. The genetic diversity among the five isolates which contained plasmids and seven isolates which contained no plasmid DNA were examined by using restriction endonucleas digestions, Southern hybridization ofnifHDK,nifAB genes, andFrankia cryptic DNA fragments determined ‘at random’. Results indicate that genomic DNA digestion patterns and Southern hybridizations to anifHDK probe were not able to discriminate between closely related frankiae. On the other hand, plasmid presence, Southern hybridization to anifAB proble or to a crypticFrankia probe allowed us to delineate groupings of these isolates.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • An C S, Riggsby W S and Mullin B C 1985 Relationships ofFrankia isolates based on deoxyribonucleic acid homology studies. Int. J. Syst. Bacteriol. 35, 140–146.

    Google Scholar 

  • Benson D R, Buchholz S E and Hanna D G 1984 Identification ofFrankia strains by two-dimensional polyacrylamide gel electrophoresis. Appl. Environ. Microbiol. 47, 489–493.

    Google Scholar 

  • Benson D R and Hanna D 1983Frankia diversity in an alder stand as estimated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis of whole-cell proteins. Can. J. Bot. 61, 2919–2923.

    Google Scholar 

  • Birnboim H C and Doly J 1979 A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7, 1513–1523.

    PubMed  Google Scholar 

  • Bolivar F, Rodriguez R L, Greene P J, Betlach M C, Heyneker H L, Boyer H W, Crosa J H and Falkow S 1977 Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene 2, 95–113.

    PubMed  Google Scholar 

  • Callaham J G, Del Tredici P and Torrey J G 1978 Isolation andin vitro characterization of an actinomycetous endophyte fromComptonia peregrina. Science 199, 899–902.

    Google Scholar 

  • Gardes M, Bousquet J and Lalonde M 1987 Isozyme variation among 40Frankia strains. Appl. Environ. Microbiol. 53, 1596–1603.

    Google Scholar 

  • Gardes M and Lalonde M 1987 Identification and subgrouping ofFrankia strains using sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Physiol. Plant. 70, 237–244.

    Google Scholar 

  • Hadley R G, Eaglesham A R and Szalay A A 1983 Conservation of DNA regions adjacent tonifKDH homologous sequences in diverse slow-growingRhizobium strains. J. Mol. Appl. Genet. 2, 225–236.

    PubMed  Google Scholar 

  • Hennecke H, Kaluza K, Thony B, Fuhrmann M, Ludwig W and Stackebrandt E 1985 concurrent evolution of nitrogenase genes and 16S rRNA inRhizobium species and other nitrogen-fixing bacteria. Arch. Microbiol. 142, 342–348.

    Google Scholar 

  • Holmes D S and Quigley M 1981 A rapid boiling method for the preparation of bacterial plasmids. Anal Biochem. 114, 551–559.

    Google Scholar 

  • Lalonde M, Calvert H E and Pine S 1981 Isolation and use ofFrankia strains in actinorhizae formation. pp 296–299.In Current Perspectives in Nitrogen Fixation. Eds. A H Gibson and W E Newton. Australian Academy of Science, Canberra, Australia.

    Google Scholar 

  • Maniatis T, Fritsch E F and Sambrook J 1982 Molecular Cloning. Cold Spring Harbor Laboratory, Cold Spring Harbour, New York, 454 p.

    Google Scholar 

  • Miller J M 1972 Experiments in Molecular Genetics. Cold Spring Harbor Laboratory, Cold Spring Harbour, New York.

    Google Scholar 

  • Murray N E, Brammer W J and Murray K 1977 Lambdoid phages that simplify the recovery ofin vitro recombinants. Mol. Gen. Genet. 150, 53–61.

    PubMed  Google Scholar 

  • Noel K D and Brill W J 1980 Diversity and dynamics of indigenousRhizobium japonicum populations. Appl. Environ. Microbiol. 40, 931–938.

    Google Scholar 

  • Puppo A, Dimitijevic L, Diem H G and Dommergues Y R 1985 Homogeneity of superoxide dismutase patterns inFrankia strains from Casuarinaceae. FEMS Microbiol. Lett. 30, 43–46.

    Google Scholar 

  • Rigby P W J, Dieckmann M, Rhodes D and Berg P 1977 Labelling deoxyribonucleic acid to high specific activityin vitro by nick translation with DNA polymerase. J. Mol. Biol. 113, 237–251.

    PubMed  Google Scholar 

  • Sadowsky M J, Tully R E, Cregan P B and Keyser H H 1987 Genetic diversity inBradyrhizobium japonicum serogroup 123 and its relation to genotype-specific nodulation of soybean. Appl. Environ. Microbiol. 53, 2624–2630.

    Google Scholar 

  • Simonet P, Capellano A, Navarro E, Bardin R, and Moiroud A 1984 An improved method for lysis ofFrankia with achromopeptidase, allows detetion of new plasmids. Can. J. Microbiol. 30, 1292–1295.

    Google Scholar 

  • Simonet P, Haurat J, Normand P, Bardin R and Moiroud A 1986 Localization ofnif genes on a large plasmid inFrankia sp. strain ULQ0132105009. Mol. Gen. Genet. 204, 492–495.

    Google Scholar 

  • Simonet P, Normand P, Moiroud A and Lalonde M 1985 Restriction enzyme digestion patterns ofFrankia plasmids. Plant and Soil 87, 49–60.

    Google Scholar 

  • Soberon X, Covarrubias L and Bolivar F 1980 Construction and characterization of new cloning vehicles. IV. Deletion derivatives of pBR322 and pBR325. Gene 9, 287–305.

    PubMed  Google Scholar 

  • Southern E M 1975 Detection of specific sequences among fragments separated by gel electrophoresis. J. Mol. Biol. 98, 503–517.

    PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Simonet, P., Thi Le, N., Moiroud, A. et al. Diversity ofFrankia strains isolated from a single alder stand. Plant Soil 118, 13–22 (1989). https://doi.org/10.1007/BF02232786

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF02232786

Key words

Navigation