The 2023 MDPI Annual Report has
been released!
 
15 pages, 3093 KiB  
Article
Inflammatory Cytokine-Induced Muscle Atrophy and Weakness Can Be Ameliorated by an Inhibition of TGF-β-Activated Kinase-1
by Mai Kanai, Byambasuren Ganbaatar, Itsuro Endo, Yukiyo Ohnishi, Jumpei Teramachi, Hirofumi Tenshin, Yoshiki Higa, Masahiro Hiasa, Yukari Mitsui, Tomoyo Hara, Shiho Masuda, Hiroki Yamagami, Yuki Yamaguchi, Ken-ichi Aihara, Mayu Sebe, Rie Tsutsumi, Hiroshi Sakaue, Toshio Matsumoto and Masahiro Abe
Int. J. Mol. Sci. 2024, 25(11), 5715; https://doi.org/10.3390/ijms25115715 - 24 May 2024
Abstract
Chronic inflammation causes muscle wasting. Because most inflammatory cytokine signals are mediated via TGF-β-activated kinase-1 (TAK1) activation, inflammatory cytokine-induced muscle wasting may be ameliorated by the inhibition of TAK1 activity. The present study was undertaken to clarify whether TAK1 inhibition can ameliorate inflammation-induced [...] Read more.
Chronic inflammation causes muscle wasting. Because most inflammatory cytokine signals are mediated via TGF-β-activated kinase-1 (TAK1) activation, inflammatory cytokine-induced muscle wasting may be ameliorated by the inhibition of TAK1 activity. The present study was undertaken to clarify whether TAK1 inhibition can ameliorate inflammation-induced muscle wasting. SKG/Jcl mice as an autoimmune arthritis animal model were treated with a small amount of mannan as an adjuvant to enhance the production of TNF-α and IL-1β. The increase in these inflammatory cytokines caused a reduction in muscle mass and strength along with an induction of arthritis in SKG/Jcl mice. Those changes in muscle fibers were mediated via the phosphorylation of TAK1, which activated the downstream signaling cascade via NF-κB, p38 MAPK, and ERK pathways, resulting in an increase in myostatin expression. Myostatin then reduced the expression of muscle proteins not only via a reduction in MyoD1 expression but also via an enhancement of Atrogin-1 and Murf1 expression. TAK1 inhibitor, LL-Z1640-2, prevented all the cytokine-induced changes in muscle wasting. Thus, TAK1 inhibition can be a new therapeutic target of not only joint destruction but also muscle wasting induced by inflammatory cytokines. Full article
(This article belongs to the Special Issue Muscle Proteins, Functions and Interactions)
Show Figures

Figure 1

12 pages, 2484 KiB  
Article
Transplantation of Mesenchymal Stem Cells Derived from Old Rats Improves Healing and Biomechanical Properties of Vaginal Tissue Following Surgical Incision in Aged Rats
by Ofra Ben Menachem-Zidon, Benjamin Reubinoff and David Shveiky
Int. J. Mol. Sci. 2024, 25(11), 5714; https://doi.org/10.3390/ijms25115714 - 24 May 2024
Abstract
Pelvic floor dysfunction encompasses a group of disorders that negatively affect the quality of women’s lives. These include pelvic organ prolapse (POP), urinary incontinence, and sexual dysfunction. The greatest risk factors for prolapse are increased parity and older age, with the largest group [...] Read more.
Pelvic floor dysfunction encompasses a group of disorders that negatively affect the quality of women’s lives. These include pelvic organ prolapse (POP), urinary incontinence, and sexual dysfunction. The greatest risk factors for prolapse are increased parity and older age, with the largest group requiring surgical intervention being post-menopausal women over 65. Prolapse recurrence rates following surgery were reported to be as high as 30%. This may be attributed to ineffective healing in the elderly. Autologous stem cell transplantation during surgery may improve surgical results. In our previous studies, we showed that the transplantation of bone marrow-derived mesenchymal stem cells (MSCs) from young donor rats improved the healing of full-thickness vaginal surgical incision in the vaginal wall of old rats, demonstrated by both histological and functional analysis. In order to translate these results into the clinical reality of autologous MSC transplantation in elderly women, we sought to study whether stem cells derived from old donor animals would provide the same effect. In this study, we demonstrate that MSC transplantation attenuated the inflammatory response, increased angiogenesis, and exhibited a time-dependent impact on MMP9 localization. Most importantly, transplantation improved the restoration of the biomechanical properties of the vagina, resulting in stronger healed vaginal tissue. These results may pave the way for further translational studies focusing on the potential clinical autologous adjuvant transplantation of MSCs for POP repair for the improvement of surgical outcomes. Full article
Show Figures

Figure 1

18 pages, 1853 KiB  
Article
MPHGCL-DDI: Meta-Path-Based Heterogeneous Graph Contrastive Learning for Drug-Drug Interaction Prediction
by Baofang Hu, Zhenmei Yu and Mingke Li
Molecules 2024, 29(11), 2483; https://doi.org/10.3390/molecules29112483 - 24 May 2024
Abstract
The combinatorial therapy with multiple drugs may lead to unexpected drug-drug interactions (DDIs) and result in adverse reactions to patients. Predicting DDI events can mitigate the potential risks of combinatorial therapy and enhance drug safety. In recent years, deep models based on heterogeneous [...] Read more.
The combinatorial therapy with multiple drugs may lead to unexpected drug-drug interactions (DDIs) and result in adverse reactions to patients. Predicting DDI events can mitigate the potential risks of combinatorial therapy and enhance drug safety. In recent years, deep models based on heterogeneous graph representation learning have attracted widespread interest in DDI event prediction and have yielded satisfactory results, but there is still room for improvement in prediction performance. In this study, we proposed a meta-path-based heterogeneous graph contrastive learning model, MPHGCL-DDI, for DDI event prediction. The model constructs two contrastive views based on meta-paths: an average graph view and an augmented graph view. The former represents that there are connections between drugs, while the latter reveals how the drugs connect with each other. We defined three levels of data augmentation schemes in the augmented graph view and adopted a combination of three losses in the model training phase: multi-relation prediction loss, unsupervised contrastive loss and supervised contrastive loss. Furthermore, the model incorporates indirect drug information, protein–protein interactions (PPIs), to reveal latent relations of drugs. We evaluated MPHGCL-DDI on three different tasks of two datasets. Experimental results demonstrate that MPHGCL-DDI surpasses several state-of-the-art methods in performance. Full article
(This article belongs to the Special Issue Computational Strategy for Drug Design)
14 pages, 1151 KiB  
Article
In Vitro Investigations into the Potential Drug Interactions of Pseudoginsenoside DQ Mediated by Cytochrome P450 and Human Drug Transporters
by Zhuo Li, Cuizhu Wang, Jinping Liu, Pingya Li and Hao Feng
Molecules 2024, 29(11), 2482; https://doi.org/10.3390/molecules29112482 - 24 May 2024
Abstract
Pseudoginsenoside DQ (PDQ), an ocotillol-type ginsenoside, is synthesized with protopanaxadiol through oxidative cyclization. PDQ exhibits good anti-arrhythmia activity. However, the inhibitory effect of PDQ on the cytochrome 450 (CYP450) enzymes and major drug transporters is still unclear. Inhibition of CYP450 and drug transporters [...] Read more.
Pseudoginsenoside DQ (PDQ), an ocotillol-type ginsenoside, is synthesized with protopanaxadiol through oxidative cyclization. PDQ exhibits good anti-arrhythmia activity. However, the inhibitory effect of PDQ on the cytochrome 450 (CYP450) enzymes and major drug transporters is still unclear. Inhibition of CYP450 and drug transporters may affect the efficacy of the drugs being used together with PDQ. These potential drug–drug interactions (DDIs) are essential for the clinical usage of drugs. In this study, we investigated the inhibitory effect of PDQ on seven CYP450 enzymes and seven drug transporters with in vitro models. PDQ has a significant inhibitory effect on CYP2C19 and P-glycoprotein (P-gp) with a half-inhibitory concentration (IC50) of 0.698 and 0.41 μM, respectively. The inhibition of CYP3A4 and breast cancer-resistant protein (BCRP) is less potent, with IC50 equal to 2.02-6.79 and 1.08 μM, respectively. Full article
(This article belongs to the Section Medicinal Chemistry)
Show Figures

Graphical abstract

29 pages, 2852 KiB  
Review
Recent Advances in the Domino Annulation Reaction of Quinone Imines
by Zhen-Hua Wang, Xiao-Hui Fu, Qun Li, Yong You, Lei Yang, Jian-Qiang Zhao, Yan-Ping Zhang and Wei-Cheng Yuan
Molecules 2024, 29(11), 2481; https://doi.org/10.3390/molecules29112481 - 24 May 2024
Abstract
Quinone imines are important derivatives of quinones with a wide range of applications in organic synthesis and the pharmaceutical industry. The attack of nucleophilic reagents on quinone imines tends to lead to aromatization of the quinone skeleton, resulting in both the high reactivity [...] Read more.
Quinone imines are important derivatives of quinones with a wide range of applications in organic synthesis and the pharmaceutical industry. The attack of nucleophilic reagents on quinone imines tends to lead to aromatization of the quinone skeleton, resulting in both the high reactivity and the unique reactivity of quinone imines. The extreme value of quinone imines in the construction of nitrogen- or oxygen-containing heterocycles has attracted widespread attention, and remarkable advances have been reported recently. This review provides an overview of the application of quinone imines in the synthesis of cyclic compounds via the domino annulation reaction. Full article
(This article belongs to the Special Issue Recent Advances in Domino Reactions)
18 pages, 1122 KiB  
Article
Development of an Optical System for Strain Drop Measurement of Osteosarcoma Cells on Substrates with Different Stiffness
by Ludovica Apa, Maria Vittoria Martire, Serena Carraro, Marianna Cosentino, Zaccaria Del Prete, Barbara Peruzzi and Emanuele Rizzuto
Sensors 2024, 24(11), 3383; https://doi.org/10.3390/s24113383 (registering DOI) - 24 May 2024
Abstract
Adherent cells perceive mechanical feedback from the underlying matrix and convert it into biochemical signals through a process known as mechanotransduction. The response to changes in the microenvironment relies on the cell’s mechanical properties, including elasticity, which was recently identified as a biomarker [...] Read more.
Adherent cells perceive mechanical feedback from the underlying matrix and convert it into biochemical signals through a process known as mechanotransduction. The response to changes in the microenvironment relies on the cell’s mechanical properties, including elasticity, which was recently identified as a biomarker for various diseases. Here, we propose the design, development, and characterization of a new system for the measurement of adherent cells’ strain drop, a parameter correlated with cells’ elasticity. To consider the interplay between adherent cells and the host extracellular matrix, cell stretching was combined with adhesion on substrates with different stiffnesses. The technique is based on the linear stretching of silicone chambers, high-speed image acquisition, and feedback for image centering. The system was characterized in terms of the strain homogeneity, impact of collagen coating, centering capability, and sensitivity. Subsequently, it was employed to measure the strain drop of two osteosarcoma cell lines, low-aggressive osteoblast-like SaOS-2 and high-aggressive 143B, cultured on two different substrates to recall the stiffness of the bone and lung extracellular matrices. Results demonstrated good substrate homogeneity, a negligible effect of the collagen coating, and an accurate image centering. Finally, the experimental results showed an average strain drop that was lower in the 143B cells in comparison with the SaOS-2 cells in all the tested conditions. Full article
(This article belongs to the Section Biosensors)
14 pages, 7945 KiB  
Article
High-Throughput Micro-Combinatorial TEM Phase Mapping of the DC Magnetron Sputtered YxTi1−xOy Thin Layer System
by Dániel Olasz, Viktória Kis, Ildikó Cora, Miklós Németh and György Sáfrán
Nanomaterials 2024, 14(11), 925; https://doi.org/10.3390/nano14110925 (registering DOI) - 24 May 2024
Abstract
High-throughput methods are extremely important in today’s materials science, especially in the case of thin film characterization. The micro-combinatorial method enables the deposition and characterization of entire multicomponent thin film systems within a single sample. In this paper, we report the application of [...] Read more.
High-throughput methods are extremely important in today’s materials science, especially in the case of thin film characterization. The micro-combinatorial method enables the deposition and characterization of entire multicomponent thin film systems within a single sample. In this paper, we report the application of this method for the comprehensive TEM characterization of the Y-Ti-O layer system. Variable composition samples (YxTi1−xOy) were prepared by dual DC magnetron sputtering, covering the entire (0 ≤ x ≤ 1) concentration range. The structure and morphology of phases formed in both as-deposited and annealed samples at 600, 700, and 800 °C were revealed as a function of Y-Ti composition (x). A comprehensive map showing the appropriate amorphous and crystalline phases, and their occurrence regions of the whole Y-Ti-O layer system, was revealed. Thanks to the applied method, it was shown with ease that at the given experimental conditions, the Y2Ti2O7 phase with a pyrochlore structure forms already at 700 °C without the TiO2 and Y2O3 by-phases, which is remarkably lower than the required temperature for most physical preparation methods, demonstrating the importance and benefits of creating phase maps in materials science and technology. Full article
(This article belongs to the Special Issue Trends and Prospects in Nanoscale Thin Films and Coatings)
Show Figures

Figure 1

15 pages, 3488 KiB  
Article
Sliding Layer Formation during Tribological Contact between Expanded Graphite and Stainless Steel—A Pilot Study
by Aleksandra Rewolińska, Kamil Leksycki, Karolina Perz and Grzegorz Kinal
Appl. Sci. 2024, 14(11), 4497; https://doi.org/10.3390/app14114497 (registering DOI) - 24 May 2024
Abstract
The sliding layer created during operation of the expanded graphite–steel combination has had a huge impact on the effectiveness of the friction process, and thus on the sustainable development of society. Knowledge of the factors determining the properties of the sliding layer will [...] Read more.
The sliding layer created during operation of the expanded graphite–steel combination has had a huge impact on the effectiveness of the friction process, and thus on the sustainable development of society. Knowledge of the factors determining the properties of the sliding layer will make it possible to reduce friction resistance in the future through the proper design and selection of sliding pairs for given applications. This paper studies the effect of the moisture content of expanded graphite on the formation of a sliding layer on a stainless steel surface. The tests were carried out in static contact for 30 s and dynamic contact for 15 and 30 min, for loads of 10, 20, and 30 N and speeds of 25 and 50 mm/s. To determine the changes in surface geometry due to material transfer, the Ra roughness value of the surface of stainless steel samples was measured. In order to realize the purpose of the work and evaluate the effect of moist rings on the resulting sliding layer, the results of the surface roughness of stainless steel samples working with dry and moist graphite rings were compiled. The obtained results show that the presence of water in the stainless steel-expanded graphite friction node affects the formation of a sliding layer. The resulting layer reduces the surface roughness of the cooperating materials and prevents their accelerated wear. After 5 min of work with the water-soaked graphite counter-sample, depending on the applied friction conditions, a reduction in the surface roughness of the stainless steel sample was achieved in the range of 11–18% compared to the initial value. After 30 min of operation, the surface roughness decreased by 3 to 25%. Pilot studies have shown that operating conditions influence the formation of a sliding layer in the stainless steel-expanded graphite tribological contact. This confirms the validity of conducting further research in this area. Full article
14 pages, 1491 KiB  
Article
Spatio-Temporal Dynamics of Larval Fish Assemblage in the Nakdong River Estuary, South Korea
by Hee-Chan Choi, Seok-Hyun Youn, Sasngil Kim and Joo Myun Park
Diversity 2024, 16(6), 315; https://doi.org/10.3390/d16060315 (registering DOI) - 24 May 2024
Abstract
Estuaries are crucial fish nursery habitats owing to their high productivity and the presence of various microhabitats for the early development of aquatic organisms. This study investigated the temporal and spatial patterns of the species composition and abundance of larval fish assemblages in [...] Read more.
Estuaries are crucial fish nursery habitats owing to their high productivity and the presence of various microhabitats for the early development of aquatic organisms. This study investigated the temporal and spatial patterns of the species composition and abundance of larval fish assemblages in the Nakdong River estuary, South Korea, through bi-monthly sampling in the inner and outer estuaries. Fifty-five larval taxa were collected, and the larval fish assemblages were dominated by a few species. Engraulis japonicus (28.8%) was the most abundant, followed by Gobiidae sp.1 (22.6%), Clupea pallasii (13.9%), and Omobranchus sp. (6.1%). The species richness, abundance, and diversity tended to be higher during the warm season in the inner estuary. Multivariate analyses revealed that the structures of larval fish assemblages were significantly influenced by the season and site. Spatial and seasonal changes in larval fish assemblages resulted from the different occurrence patterns of common fish larvae in relation to water temperature and salinity. Among the predominant fish larvae, E. japonicus was captured more frequently in more saline outer estuaries during the warm season, whereas Gobiidae sp.1 and C. pallasii were more abundant in less saline inner estuaries during the warm and cold seasons, respectively. The results of this study improve our understanding of larval biodiversity in estuarine habitats in relation to environmental modification and contribute to the evaluation of nursery functions in the Nakdong River estuary. Full article
(This article belongs to the Special Issue Dynamics of Marine Communities)
11 pages, 661 KiB  
Article
Epstein–Barr Virus and Clinico-Endoscopic Characteristics of Gastric Remnant Cancers Compared to Proximal Non-Remnant Cancers: A Population-Based Study
by Erling A. Bringeland, Christina Våge, Ann A. S. Ubøe, Alina D. Sandø, Patricia Mjønes and Reidar Fossmark
Cancers 2024, 16(11), 2000; https://doi.org/10.3390/cancers16112000 (registering DOI) - 24 May 2024
Abstract
Epstein–Barr virus (EBV) is associated with 5–10% of gastric cancers and is recognized as a distinct molecular subtype. EBV positivity is particularly high in gastric remnant cancer (GRC), which may inform the mode of clinical presentation and findings at endoscopy. Most data are [...] Read more.
Epstein–Barr virus (EBV) is associated with 5–10% of gastric cancers and is recognized as a distinct molecular subtype. EBV positivity is particularly high in gastric remnant cancer (GRC), which may inform the mode of clinical presentation and findings at endoscopy. Most data are from the East, and the question remains how this applies to a Western cohort. We conducted a population-based study in Central Norway, 2001–2016. Patients with GRC (n = 78) and patients with non-GRC proximally located cancer and available tissue for EBV status (n = 116, control group) were identified from the Norwegian Cancer Registry. Relevant data were collected from the individual patient journals. EBV status was assessed using in situ hybridization. The median latency time from the distal gastrectomy to GRC was 37.6 (range 15.7–68.0) years. GRC more often presented with GI bleeding, 31.0% vs. 16.1%, p = 0.017, and at endoscopy more seldom with an ulcer, 19.7% vs. 38.2%, p = 0.012, or a tumour, 40.8% vs. 66.4%, p < 0.001. For GRC, 18.7% were EBV-positive compared to 6.0% among the controls, p = 0.006. EBV status was not associated with patient age, sex, or Lauren histological type. No difference in long-term survival rates between GRC and controls was found or between EBV-positive vs. -negative GRCs. In conclusion, a higher proportion of GRC cases, compared to controls, are EBV positive, indicating different causative factors. The mode of clinical presentation and findings at endoscopy were more subtle in the patients with GRC. Full article
(This article belongs to the Special Issue Viruses in Cancer Etiology)
19 pages, 3943 KiB  
Article
Time–Frequency Domain Seismic Signal Denoising Based on Generative Adversarial Networks
by Ming Wei, Xinlei Sun and Jianye Zong
Appl. Sci. 2024, 14(11), 4496; https://doi.org/10.3390/app14114496 (registering DOI) - 24 May 2024
Abstract
Existing deep learning-based seismic signal denoising methods primarily operate in the time domain. Those methods are ineffective when noise overlaps with the seismic signal in the time domain. Time–frequency domain-based deep learning methods are relatively rare and usually employ single loss function, resulting [...] Read more.
Existing deep learning-based seismic signal denoising methods primarily operate in the time domain. Those methods are ineffective when noise overlaps with the seismic signal in the time domain. Time–frequency domain-based deep learning methods are relatively rare and usually employ single loss function, resulting in suboptimal performance on low SNR signals and potential damage to P wave. This paper proposes a method based on generative adversarial networks (GANs). Compared to convolutional neural networks, the discriminator in GANs helps retain more true signal details by judging denoising performance. Additionally, an attention mechanism is introduced to fully extract signal features, and a perceptual loss is employed to evaluate the difference between the denoised result and the target’s high-level features. Experimental results show that this method can effectively improve SNR and ensure that the denoised result is close to the true signal. Furthermore, by comparing DeepDenoiser and ARDU, it is proven that the proposed method achieves better denoising performance, especially for low SNR signals, while causing less damage to the seismic signals. Full article
28 pages, 1259 KiB  
Article
Are Terminal Alkynes Necessary for MAO-A/MAO-B Inhibition? A New Scaffold Is Revealed
by Panagiou Mavroeidi, Leandros P. Zorba, Nikolaos V. Tzouras, Stavros P. Neofotistos, Nikitas Georgiou, Kader Sahin, Murat Şentürk, Serdar Durdagi, Georgios C. Vougioukalakis and Thomas Mavromoustakos
Molecules 2024, 29(11), 2486; https://doi.org/10.3390/molecules29112486 (registering DOI) - 24 May 2024
Abstract
A versatile family of quaternary propargylamines was synthesized employing the KA2 multicomponent reaction, through the single-step coupling of a number of amines, ketones, and terminal alkynes. Sustainable synthetic procedures using transition metal catalysts were employed in all cases. The inhibitory activity of [...] Read more.
A versatile family of quaternary propargylamines was synthesized employing the KA2 multicomponent reaction, through the single-step coupling of a number of amines, ketones, and terminal alkynes. Sustainable synthetic procedures using transition metal catalysts were employed in all cases. The inhibitory activity of these molecules was evaluated against human monoaminoxidase (hMAO)-A and hMAO-B enzymes and was found to be significant. The IC50 values for hMAO-B range from 152.1 to 164.7 nM while the IC50 values for hMAO-A range from 765.6 to 861.6 nM. Furthermore, these compounds comply with Lipinski’s rule of five and exhibit no predicted toxicity. To understand their binding properties with the two target enzymes, key interactions were studied using molecular docking, all-atom molecular dynamics (MD) simulations, and MM/GBSA binding free energy calculations. Overall, herein, the reported family of propargylamines exhibits promise as potential treatments for neurodegenerative disorders, such as Parkinson’s disease. Interestingly, this is the first time a propargylamine scaffold bearing an internal alkyne has been reported to show activity against monoaminoxidases. Full article
(This article belongs to the Special Issue Synthesis of Bioactive Compounds: Volume II)
11 pages, 1188 KiB  
Article
Enhanced Adsorption of Cage-Shaped Proteins on Carbon Surfaces by Carbon Nanotube (CNT)-Binding Peptide Aptamers
by Narangerel Ganbaatar, Ting-Chieh Chu, Naofumi Okamoto, Kenji Iwahori, Masakazu Nakamura and Ichiro Yamashita
Biophysica 2024, 4(2), 256-266; https://doi.org/10.3390/biophysica4020018 (registering DOI) - 24 May 2024
Abstract
The adsorption behavior of recombinant cage-shaped proteins with carbon nanotube (CNT)-binding peptides on carbon surfaces was quantitatively and dynamically analyzed using a highly stable quartz crystal microbalance (QCM). Two types of CNT-binding peptide aptamers obtained by the phage display method were attached to [...] Read more.
The adsorption behavior of recombinant cage-shaped proteins with carbon nanotube (CNT)-binding peptides on carbon surfaces was quantitatively and dynamically analyzed using a highly stable quartz crystal microbalance (QCM). Two types of CNT-binding peptide aptamers obtained by the phage display method were attached to the N- and C-termini of the Dps (DNA-binding protein derived from starved cells) to produce carbonaceous material-binding Dps. The carbon adsorption ability of the mutant Dps was studied by QCM measurement using a carbon-coated QCM sensor. The produced peptide aptamer-modified Dps showed higher affinity than a wild Dps and also showed higher adsorption capacity than a previously used Dps with carbon nanohorn-binding peptides. The newly obtained peptide aptamers were proven to provide Dps with high adsorption affinity on carbon surfaces. Furthermore, the aptamer modified to the N-terminus of the Dps subunit showed more efficient adsorption than the aptamers attached to the C-terminus of the Dp, and the linker was found to improve the adsorption ability. Full article
(This article belongs to the Collection Feature Papers in Biophysics)
15 pages, 4975 KiB  
Article
Efficient Biodegradation of the Neonicotinoid Insecticide Flonicamid by Pseudaminobacter salicylatoxidans CGMCC 1.17248: Kinetics, Pathways, and Enzyme Properties
by Yun-Xiu Zhao, Jing Yuan, Ke-Wei Song, Chi-Jie Yin, Li-Wen Chen, Kun-Yan Yang, Ju Yang and Yi-Jun Dai
Microorganisms 2024, 12(6), 1063; https://doi.org/10.3390/microorganisms12061063 (registering DOI) - 24 May 2024
Abstract
Nitrile-containing insecticides can be converted into their amide derivatives by Pseudaminobacter salicylatoxidans. N-(4-trifluoromethylnicotinoyl) glycinamide (TFNG-AM) is converted to 4-(trifluoromethyl) nicotinoyl glycine (TFNG) using nitrile hydratase/amidase. However, the amidase that catalyzes this bioconversion has not yet been fully elucidated. In this study, [...] Read more.
Nitrile-containing insecticides can be converted into their amide derivatives by Pseudaminobacter salicylatoxidans. N-(4-trifluoromethylnicotinoyl) glycinamide (TFNG-AM) is converted to 4-(trifluoromethyl) nicotinoyl glycine (TFNG) using nitrile hydratase/amidase. However, the amidase that catalyzes this bioconversion has not yet been fully elucidated. In this study, it was discovered that flonicamid (FLO) is degraded by P. salicylatoxidans into the acid metabolite TFNG via the intermediate TFNG-AM. A half-life of 18.7 h was observed for P. salicylatoxidans resting cells, which transformed 82.8% of the available FLO in 48 h. The resulting amide metabolite, TFNG-AM, was almost all converted to TFNG within 19 d. A novel amidase-encoding gene was cloned and overexpressed in Escherichia coli. The enzyme, PmsiA, hydrolyzed TFNG-AM to TFNG. Despite being categorized as a member of the amidase signature enzyme superfamily, PsmiA only shares 20–30% identity with the 14 previously identified members of this family, indicating that PsmiA represents a novel class of enzyme. Homology structural modeling and molecular docking analyses suggested that key residues Glu247 and Met242 may significantly impact the catalytic activity of PsmiA. This study contributes to our understanding of the biodegradation process of nitrile-containing insecticides and the relationship between the structure and function of metabolic enzymes. Full article
(This article belongs to the Special Issue Microbial Biocatalysis and Biodegradation 2.0)
Show Figures

Figure 1

24 pages, 2513 KiB  
Article
Free and Forced Vibration Characteristics of a Composite Stiffened Plate Based on Energy Method
by Xin Gu, Xianzhong Wang, Weiguo Wu, Jie Sun, Yongshui Lin and Yueming Fang
J. Mar. Sci. Eng. 2024, 12(6), 875; https://doi.org/10.3390/jmse12060875 (registering DOI) - 24 May 2024
Abstract
The composite stiffened plate has garnered significant attention in the lightweight design of ship structures due to its superior mechanical properties. Although it reduces the structural weight, it also increases vibration sensitivity. Thus, investigating the vibration characteristics of the composite stiffened plate is [...] Read more.
The composite stiffened plate has garnered significant attention in the lightweight design of ship structures due to its superior mechanical properties. Although it reduces the structural weight, it also increases vibration sensitivity. Thus, investigating the vibration characteristics of the composite stiffened plate is crucial. This paper proposed a theoretical model based on the energy principle and the improved Fourier series method (IFSM) to analyze the composite stiffened plate vibration characteristics. The model demonstrates high reliability and accuracy, as confirmed through convergence analysis and comparison with experimental results from the published literature. Results indicate that geometry and material parameters significantly impact the natural frequency and can mitigate vibration responses by increasing thickness and stiffness. Additionally, ply design parameters markedly influence the vibration of composite stiffened plates, enhancing low-frequency vibration performance through optimal ply design. The structural parameters of the stiffeners, particularly the height and number of stiffeners, play a crucial role, enhancing stiffness and reducing the vibration responses of the composite stiffened plates. Full article
(This article belongs to the Section Ocean Engineering)
13 pages, 557 KiB  
Review
Accessibility of Motion Capture as a Tool for Sports Performance Enhancement for Beginner and Intermediate Cricket Players
by Kaveendra Maduwantha, Ishan Jayaweerage, Chamara Kumarasinghe, Nimesh Lakpriya, Thilina Madushan, Dasun Tharanga, Mahela Wijethunga, Ashan Induranga, Niroshan Gunawardana, Pathum Weerakkody and Kaveenga Koswattage
Sensors 2024, 24(11), 3386; https://doi.org/10.3390/s24113386 (registering DOI) - 24 May 2024
Abstract
Motion Capture (MoCap) has become an integral tool in fields such as sports, medicine, and the entertainment industry. The cost of deploying high-end equipment and the lack of expertise and knowledge limit the usage of MoCap from its full potential, especially at beginner [...] Read more.
Motion Capture (MoCap) has become an integral tool in fields such as sports, medicine, and the entertainment industry. The cost of deploying high-end equipment and the lack of expertise and knowledge limit the usage of MoCap from its full potential, especially at beginner and intermediate levels of sports coaching. The challenges faced while developing affordable MoCap systems for such levels have been discussed in order to initiate an easily accessible system with minimal resources. Full article
(This article belongs to the Section Biomedical Sensors)
19 pages, 1498 KiB  
Article
Heat Transfer and Entropy Generation for Mixed Convection of Al2O3–Water Nanofluid in a Lid-Driven Square Cavity with a Concentric Square Blockage
by M. Özgün Korukçu
Processes 2024, 12(6), 1079; https://doi.org/10.3390/pr12061079 (registering DOI) - 24 May 2024
Abstract
The present numerical investigation is focused on analyzing the characteristics of steady laminar mixed convection flow in a lid-driven square cavity, specifically considering the utilization of Al2O3–water nanofluid. The Al2O3–water nanofluid is assumed to be [...] Read more.
The present numerical investigation is focused on analyzing the characteristics of steady laminar mixed convection flow in a lid-driven square cavity, specifically considering the utilization of Al2O3–water nanofluid. The Al2O3–water nanofluid is assumed to be Newtonian and incompressible. Within the cavity, a square blockage is positioned at its center, which is subjected to isothermal heating. The blockage ratio of the square is B = 1/4, and the Grashof number is Gr = 100. The walls of the cavity are maintained at a constant temperature, Tc, while the square blockage remains at a constant temperature, Th. The primary objective of this study is to investigate the flow and heat transfer mechanisms, as well as the entropy generation within the cavity. This investigation is conducted for a range of Richardson numbers (0.01 ≤ Ri ≤ 100) and volume fractions of the nanofluid (0 ≤ ϕ ≤ 0.05). Several parameters are obtained and analyzed, including streamlines, isotherms, velocity variations on the vertical and horizontal midplanes, local Nusselt number variations on the surfaces of the square blockage, the average Nusselt number on the square blockage, and the total dimensionless entropy generation of the system. The results of the investigation revealed that both the average Nusselt number on the square blockage and the total dimensionless entropy generation of the system exhibit an increasing trend with an increasing volume fraction of the nanofluid and a decreasing Richardson number. Furthermore, correlations for the average Nusselt number and the total dimensionless entropy generation with the Richardson number, and the nanofluid volume fraction are derived. Full article
(This article belongs to the Special Issue New Trends and Processes in Nanofluids and Carbon-Based Nanoparticles)
Show Figures

Graphical abstract

16 pages, 617 KiB  
Article
Effects of Ownership Structure on Intellectual Capital: Evidence from Publicly Listed Banks in Bangladesh
by Syed Zabid Hossain and Md. Sohel Rana
J. Risk Financial Manag. 2024, 17(6), 222; https://doi.org/10.3390/jrfm17060222 (registering DOI) - 24 May 2024
Abstract
This study explored the impacts of ownership structure (OS) on intellectual capital (IC) and its components. Data were gathered from 31 Dhaka Stock Exchange-listed banks for five years, from 2017 to 2021, consisting of 155 observations as balanced panel data. The study used [...] Read more.
This study explored the impacts of ownership structure (OS) on intellectual capital (IC) and its components. Data were gathered from 31 Dhaka Stock Exchange-listed banks for five years, from 2017 to 2021, consisting of 155 observations as balanced panel data. The study used the modified value-added intellectual coefficient (MVAIC) model to track the IC efficiency. The robust fixed effects model was employed for regression analysis to test the hypotheses. The research found that sponsor director ownership is negatively associated with the MVAIC, human capital efficiency (HCE), and structural capital efficiency (SCE) but positively with relational capital efficiency (RCE). High institutional and public ownership are positively linked with SCE but negatively with RCE. Foreign ownership is only positively associated with banks’ MVAIC and HCE. The regression results showed that high institutional ownership (IO) significantly enhanced the MVAIC and HCE. Foreign and public ownership positively influenced banks’ MVAIC, HCE, and capital employed efficiency (CEE) but negatively impacted RCE. The findings of this study will help banks’ policymakers with ownership mixes for the optimum utilization of banks’ resources. Management may assess IC’s efficiency level for proper supervision and use of knowledge resources to boost bank profitability. Also, the findings will help investors make prudent investment decisions. This is the first study to focus on OS and IC with diverse elements in Southeast Asia, especially Bangladesh, an emerging market. Full article
(This article belongs to the Special Issue Subjective Well-Being and Financial Decision Making)
Show Figures

Figure 1

12 pages, 1547 KiB  
Article
Evaluating Outdoor Performance of PV Modules Using an Innovative Explicit One-Diode Model
by Andreea Sabadus, Nicoleta Stefu and Marius Paulescu
Energies 2024, 17(11), 2547; https://doi.org/10.3390/en17112547 (registering DOI) - 24 May 2024
Abstract
Due to its simplicity, the one-diode model is commonly used for modeling the operation of photovoltaic (PV) modules at standard test conditions (STC). However, its inherent implicit nature often presents challenges in modeling PV energy production. In this paper, the innovative explicit one-diode [...] Read more.
Due to its simplicity, the one-diode model is commonly used for modeling the operation of photovoltaic (PV) modules at standard test conditions (STC). However, its inherent implicit nature often presents challenges in modeling PV energy production. In this paper, the innovative explicit one-diode model developed by us over time is adapted for estimating PV power production under real weather conditions. Simple yet accurate equations for calculating the energy output of a PV generator equipped with a maximum power point tracking (MPPT) system are proposed. The model’s performance is assessed under various normal and harsh operating conditions against measured data collected from the experimental setup located at the Solar Platform at West University of Timisoara, Romania. As an application of the new equation for maximum power, this paper presents a case study where the energy loss in the absence of an MPPT system is evaluated based on atmospheric and sky conditions. Full article
(This article belongs to the Section A2: Solar Energy and Photovoltaic Systems)
17 pages, 2757 KiB  
Article
Efficacy of Probiotic Strains Lactobacillus sakei Probio65 and Lactobacillus plantarum Probio-093 in Management of Obesity: An In Vitro and In Vivo Analysis
by Aneela Gulnaz, Lee-Ching Lew, Yong-Ha Park, Jamal S. M. Sabir, Raed Albiheyri, Irfan A. Rather and Yan-Yan Hor
Pharmaceuticals 2024, 17(6), 676; https://doi.org/10.3390/ph17060676 (registering DOI) - 24 May 2024
Abstract
The prevalence of obesity, characterized by an excessive accumulation of adipose tissue and adipocyte hypertrophy, presents a major public health challenge. This study investigates the therapeutic potential of two probiotic strains, Lactobacillus sakei Probio65 and Lactobacillus plantarum Probio-093, in the context of obesity. [...] Read more.
The prevalence of obesity, characterized by an excessive accumulation of adipose tissue and adipocyte hypertrophy, presents a major public health challenge. This study investigates the therapeutic potential of two probiotic strains, Lactobacillus sakei Probio65 and Lactobacillus plantarum Probio-093, in the context of obesity. Utilizing 3T3-L1 cell-derived human adipocytes, we assessed Probio65’s and Probio-093’s capacity to mitigate triglyceride accumulation and influence adipocytokine production in vitro. Subsequently, an in vivo trial with male C57BL/6J mice examined the effects of both probiotic strains on adipose tissue characteristics, body weight, fat mass, and obesity-related gene expression. This study employed both live and ethanol-extracted bacterial cells. The results demonstrated significant reductions in the triglyceride deposition, body weight, and adipose tissue mass in the treated groups (p < 0.05). Furthermore, both strains modulated adipokine profiles by downregulating proinflammatory markers such as PAI-1, leptin, TNF-α, STAMP2, F4/80, resistin, and MCP-1, and upregulating the insulin-sensitive transporter GLUT4 and the anti-inflammatory adiponectin (p < 0.05). Our findings suggest that Lactobacillus sakei Probio65 and Lactobacillus plantarum Probio-093 are promising agents for microbiome-targeted anti-obesity therapies, offering the effective mitigation of obesity and improvement in adipocyte function in a murine model. Full article
(This article belongs to the Special Issue Natural Products for the Treatment of Obesity)
Show Figures

Figure 1

17 pages, 888 KiB  
Article
A Gestational Pectin Diet Could Improve the Health of Multiparous Sows by Modulating the Gut Microbiota and Cytokine Level during Late Pregnancy
by Jie Zheng, Shuang Li, Jiaqi He, Hao Liu, Yingyan Huang, Xuemei Jiang, Xilun Zhao, Jian Li, Bin Feng, Lianqiang Che, Zhengfeng Fang, Shengyu Xu, Yan Lin, Lun Hua, Yong Zhuo and De Wu
Animals 2024, 14(11), 1559; https://doi.org/10.3390/ani14111559 (registering DOI) - 24 May 2024
Abstract
This study aimed to investigate the effects of the dietary fiber pectin on the gut microbiota and health of parturient sows. A total of 30 parity 5–7, multiparous gestation sows (Large White × Landrace) were randomly assigned to two treatment groups after mating: [...] Read more.
This study aimed to investigate the effects of the dietary fiber pectin on the gut microbiota and health of parturient sows. A total of 30 parity 5–7, multiparous gestation sows (Large White × Landrace) were randomly assigned to two treatment groups after mating: Con (control, basic diet) and Pec (pectin, 3%). The sows received the two diets during gestation, and all sows were fed the same standard basic diet during lactation. The results of β-diversity showed that the composition of the gut microbiota was different in the Con and Pec groups. Compared with the sows in the Con group, the Pec sows showed a higher abundance of the gut bacteria Clostridium and Romboutsia and a lower abundance of harmful bacteria (Micrococcaceae, Coriobacteriaceae, Dorea, Actinomyces). On the other hand, the SCFA plasma concentration was increased in the Pec group, while pro-inflammatory cytokine (IL-6, IL-1β, and TNF-α) concentrations were decreased. In conclusion, the soluble dietary fiber pectin could improve the reproductive performance and health of sows by increasing the abundance of some commensal bacteria enhancing the metabolite SCFA levels and reducing the pro-inflammatory cytokine plasma levels. Full article
(This article belongs to the Section Animal Nutrition)
20 pages, 721 KiB  
Article
Expedient Synthesis of Alkyl and Aryl Thioethers Using Xanthates as Thiol-Free Reagents
by Jinli Nie, Ziqing He, Sijie Xie, Yibiao Li, Runfa He, Lu Chen and Xiai Luo
Molecules 2024, 29(11), 2485; https://doi.org/10.3390/molecules29112485 (registering DOI) - 24 May 2024
Abstract
Thioethers are critical in the fields of pharmaceuticals and organic synthesis, but most of the methods for synthesis alkyl thioethers employ foul-smelling thiols as starting materials or generate them as by-products. Additionally, most thiols are air-sensitive and are easily oxidized to produce disulfides [...] Read more.
Thioethers are critical in the fields of pharmaceuticals and organic synthesis, but most of the methods for synthesis alkyl thioethers employ foul-smelling thiols as starting materials or generate them as by-products. Additionally, most thiols are air-sensitive and are easily oxidized to produce disulfides under atmospheric conditions; thus, a novel method for synthesizing thioethers is necessary. This paper reports a simple, effective, green method for synthesizing dialkyl or alkyl aryl thioether derivatives using odorless, stable, low-cost ROCS2K as a thiol surrogate. This transformation offers a broad substrate scope and good functional group tolerance with excellent selectivity. The reaction likely proceeds via xanthate intermediates, which can be readily generated via the nucleophilic substitution of alkyl halides or aryl halides with ROCS2K under transition-metal-free and base-free conditions. Full article
(This article belongs to the Section Organic Chemistry)
Show Figures

Graphical abstract

18 pages, 4327 KiB  
Review
A Review of Relationship between the Metallogenic System of Metallic Mineral Deposits and Lithospheric Electrical Structure: Insight from Magnetotelluric Imaging
by Sheng Jin, Yue Sheng, Chenggong Liu, Wenbo Wei, Gaofeng Ye, Jian’en Jing, Letian Zhang, Hao Dong, Yaotian Yin and Chengliang Xie
Minerals 2024, 14(6), 541; https://doi.org/10.3390/min14060541 (registering DOI) - 24 May 2024
Abstract
In development over 70 years, magnetotelluric (MT) sounding, a high-resolution technique for subsurface electrical resistivity imaging, has been widely applied in resource exploration in the Earth. The key factors of the metallogenic system of metallic mineral deposits can be closely correlated to the [...] Read more.
In development over 70 years, magnetotelluric (MT) sounding, a high-resolution technique for subsurface electrical resistivity imaging, has been widely applied in resource exploration in the Earth. The key factors of the metallogenic system of metallic mineral deposits can be closely correlated to the electrical anomalies of the lithosphere. In this paper, we review the relationship between the electrical resistivity model of the lithosphere and the metallogenic system. At the beginning, we indicate why the electrical parameters relate to the metallogenic system in all geophysical parameters. The advantage of MT sounding in sketching an electrical resistivity model of the lithosphere is subsequently discussed, and some methods of data processing, analysis and inversion are also introduced. Furthermore, we summarize how to bridge the relationship between the electrical resistivity model of the lithosphere and metallogenic system, and analyze the influence of the rheological variation estimated from conductivity in the lithosphere on mineralization. In the end, we list some typical cases of the application of MT sounding in mineral exploration, and also give some suggestions for future work. This study is aimed at providing guidance in discussing the metallogenic system using an electrical resistivity model. Full article
(This article belongs to the Special Issue Geoelectricity and Electrical Methods in Mineral Exploration)

Open Access Journals

Browse by Indexing Browse by Subject Selected Journals
Back to TopTop