Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops

Science. 1991 Jul 12;253(5016):191-4. doi: 10.1126/science.1712983.

Abstract

The most frequently occurring RNA hairpins in 16S and 23S ribosomal RNA contain a tetranucleotide loop that has a GNRA consensus sequence. The solution structures of the GCAA and GAAA hairpins have been determined by nuclear magnetic resonance spectroscopy. Both loops contain an unusual G-A base pair between the first and last residue in the loop, a hydrogen bond between a G base and a phosphate, extensive base stacking, and a hydrogen bond between a sugar 2'-end OH and a base. These interactions explain the high stability of these hairpins and the sequence requirements for the variant and invariant nucleotides in the GNRA tetranucleotide loop family.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Computer Graphics
  • Hydrogen Bonding
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Oligoribonucleotides / chemistry
  • RNA / chemistry
  • RNA / ultrastructure*
  • Structure-Activity Relationship
  • Thermodynamics

Substances

  • Oligoribonucleotides
  • RNA