The 2023 MDPI Annual Report has
been released!
 
21 pages, 1262 KiB  
Article
New Insights into the Biological Functions of Essential TsaB/YeaZ Protein in Staphylococcus aureus
by Haiyong Guo, Ting Lei, Junshu Yang, Yue Wang, Yifan Wang and Yinduo Ji
Antibiotics 2024, 13(5), 393; https://doi.org/10.3390/antibiotics13050393 (registering DOI) - 25 Apr 2024
Abstract
TsaB/YeaZ represents a promising target for novel antibacterial agents due to its indispensable role in bacterial survival, high conservation within bacterial species, and absence of eukaryotic homologs. Previous studies have elucidated the role of the essential staphylococcal protein, TsaB/YeaZ, in binding DNA to [...] Read more.
TsaB/YeaZ represents a promising target for novel antibacterial agents due to its indispensable role in bacterial survival, high conservation within bacterial species, and absence of eukaryotic homologs. Previous studies have elucidated the role of the essential staphylococcal protein, TsaB/YeaZ, in binding DNA to mediate the transcription of the ilv-leu operon, responsible for encoding key enzymes involved in the biosynthesis of branched-chain amino acids—namely isoleucine, leucine, and valine (ILV). However, the regulation of ILV biosynthesis does not account for the essentiality of TsaB/YeaZ for bacterial growth. In this study, we investigated the impact of TsaB/YeaZ depletion on bacterial morphology and gene expression profiles using electron microscopy and deep transcriptomic analysis, respectively. Our results revealed significant alterations in bacterial size and surface smoothness upon TsaB/YeaZ depletion. Furthermore, we pinpointed specific genes and enriched biological pathways significantly affected by TsaB/YeaZ during the early and middle exponential phases and early stationary phases of growth. Crucially, our research uncovered a regulatory role for TsaB/YeaZ in bacterial autolysis. These discoveries offer fresh insights into the multifaceted biological functions of TsaB/YeaZ within S. aureus. Full article
(This article belongs to the Special Issue Genomic Analysis of Antimicrobial Drug-Resistant Bacteria)
20 pages, 680 KiB  
Review
Methods and Techniques Supporting Energy and Media Savings in Maintenance of Public Transport Buses—State of the Art and Recommendations
by Andrzej Wieczorek, Kinga Stecuła and Wieslaw Wes Grebski
Energies 2024, 17(9), 2051; https://doi.org/10.3390/en17092051 (registering DOI) - 25 Apr 2024
Abstract
In the article, the authors discussed the topic of energy and media savings in a public transport company. The article is of a review nature, referring to 100 sources, including scientific papers, books, conference proceedings, and websites. In the first part, a detailed [...] Read more.
In the article, the authors discussed the topic of energy and media savings in a public transport company. The article is of a review nature, referring to 100 sources, including scientific papers, books, conference proceedings, and websites. In the first part, a detailed literature review on environmental protection problems in road transport and methods of solving them was conducted. Subsequently, the authors reviewed the literature content on maintenance as a pro-environmental activity in transport companies. The great accent was paid to the problem of saving energy and media in the maintenance of public transport buses. Based on the literature and knowledge, the authors proposed the possibilities of conducting a rational method of managing the operation and maintenance of buses from the point of view of environmental protection, based on the strategy of predictive bus maintenance. Full article
(This article belongs to the Section C: Energy Economics and Policy)
21 pages, 1797 KiB  
Article
Benefits of Combined Fluorescence Lifetime Imaging Microscopy and Fluorescence Correlation Spectroscopy for Biomedical Studies Demonstrated by Using a Liposome Model System
by Kristina Bruun, Hans-Gerd Löhmannsröben and Carsten Hille
Biophysica 2024, 4(2), 207-227; https://doi.org/10.3390/biophysica4020015 (registering DOI) - 25 Apr 2024
Abstract
Drug delivery systems play a pivotal role in targeted pharmaceutical transport and controlled release at specific sites. Liposomes, commonly used as drug carriers, constitute a fundamental part of these systems. Moreover, the drug–liposome model serves as a robust platform for investigating interaction processes [...] Read more.
Drug delivery systems play a pivotal role in targeted pharmaceutical transport and controlled release at specific sites. Liposomes, commonly used as drug carriers, constitute a fundamental part of these systems. Moreover, the drug–liposome model serves as a robust platform for investigating interaction processes at both cellular and molecular levels. To advance our understanding of drug carrier uptake mechanisms, we employed fluorescence lifetime imaging microscopy (FLIM) and fluorescence correlation spectroscopy (FCS), leveraging the unique benefits of two-photon (2P) excitation. Our approach utilized giant unilamellar vesicles (GUVs) as a simplified model system for cell membranes, labelled with the amphiphilic fluorescent dye 3,3′-dioctadecyloxa-carbocyanine (DiOC18(3)). Additionally, large unilamellar vesicles (LUVs) functioned as a drug carrier system, incorporating the spectrally distinct fluorescent sulforhodamine 101 (SRh101) as a surrogate drug. The investigation emphasized the diverse interactions between GUVs and LUVs based on the charged lipids employed. We examined the exchange kinetics and structural alterations of liposome carriers during the uptake process. Our study underscores the significance of employing 2P excitation in conjunction with FLIM and FCS. This powerful combination offers a valuable methodological approach for studying liposome interactions, positioning them as an exceptionally versatile model system with a distinct technical advantage. Full article
11 pages, 535 KiB  
Communication
A Proof-of-Concept Protein Microarray-Based Approach for Serotyping of Salmonella enterica Strains
by Sascha D. Braun, Elke Müller, Katrin Frankenfeld, Dominik Gary, Stefan Monecke and Ralf Ehricht
Pathogens 2024, 13(5), 355; https://doi.org/10.3390/pathogens13050355 (registering DOI) - 25 Apr 2024
Abstract
Salmonella enterica, a bacterium causing foodborne illnesses like salmonellosis, is prevalent in Europe and globally. It is found in food, water, and soil, leading to symptoms like diarrhea and fever. Annually, it results in about 95 million cases worldwide, with increasing antibiotic [...] Read more.
Salmonella enterica, a bacterium causing foodborne illnesses like salmonellosis, is prevalent in Europe and globally. It is found in food, water, and soil, leading to symptoms like diarrhea and fever. Annually, it results in about 95 million cases worldwide, with increasing antibiotic resistance posing a public health challenge. Therefore, it is necessary to detect and serotype Salmonella for several reasons. The identification of the serovars of Salmonella enterica isolates is crucial to detect and trace outbreaks and to implement effective control measures. Our work presents a protein-based microarray for the rapid and accurate determination of Salmonella serovars. The microarray carries a set of antibodies that can detect different Salmonella O- and H-antigens, allowing for the identification of multiple serovars, including Typhimurium and Enteritidis, in a single miniaturized assay. The system is fast, economical, accurate, and requires only small sample volumes. Also, it is not required to maintain an extensive collection of sera for the serotyping of Salmonella enterica serovars and can be easily expanded and adapted to new serovars and sera. The scientific state of the art in Salmonella serotyping involves the comparison of traditional, molecular, and in silico methods, with a focus on economy, multiplexing, accuracy, rapidity, and adaptability to new serovars and sera. The development of protein-based microarrays, such as the one presented in our work, contributes to the ongoing advancements in this field. Full article
(This article belongs to the Special Issue New Approaches to Combating Multidrug-Resistant Pathogens)
21 pages, 1247 KiB  
Article
Patterns of Human Milk Oligosaccharides in Mature Milk Are Associated with Certain Gut Microbiota in Infants
by Shuai Mao, Ai Zhao, Hua Jiang, Jingyu Yan, Wuxian Zhong, Yiping Xun and Yumei Zhang
Nutrients 2024, 16(9), 1287; https://doi.org/10.3390/nu16091287 (registering DOI) - 25 Apr 2024
Abstract
Human milk oligosaccharides (HMOs) are complexes that play a crucial role in shaping the early-life gut microbiota. This study intends to explore whether HMO patterns are associated with the gut microbiota of infants. We included 96 Chinese breastfeeding mother–infant dyads. Breast milk and [...] Read more.
Human milk oligosaccharides (HMOs) are complexes that play a crucial role in shaping the early-life gut microbiota. This study intends to explore whether HMO patterns are associated with the gut microbiota of infants. We included 96 Chinese breastfeeding mother–infant dyads. Breast milk and infant faecal samples were collected and tested. With milk 2′-fucosyllactose, difucosyllactose, and lacto-N-fucopentaose-I as biomarkers, we divided the mothers into secretor and non-secretor groups. HMO patterns were extracted using principal component analysis. The majority (70.7%) of mothers were categorised as secretor and five different HMO patterns were identified. After adjustment, the infants of secretor mothers exhibited a lower relative abundance of Bifidobacterium bifidum (β = −0.245, 95%CI: −0.465~−0.025). An HMO pattern characterised by high levels of 3-fucosyllactose, lacto-N-fucopentaose-III, and lacto-N-neodifucohexaose-II was positively associated with the relative abundance of Bifidobacterium breve (p = 0.014), while the pattern characterised by lacto-N-neotetraose, 6′-sialyllactose, and sialyllacto-N-tetraose-b was negatively associated with Bifidobacterium breve (p = 0.027). The pattern characterised by high levels of monofucosyl-lacto-N-hexaose-III and monofucosyl-lacto-N-neohexaose was positively associated with Bifidobacterium dentium (p = 0.025) and Bifidobacterium bifidum (p < 0.001), respectively. This study suggests that HMO patterns from mature breast milk were associated with certain gut microbiota of breastfed infants. Full article
(This article belongs to the Special Issue Roles of Dairy Intake in Health Development)
7 pages, 2331 KiB  
Case Report
Hepatic Epithelioid Hemangioendothelioma in a Dog
by Luisa Vera Muscatello, Federico Massari, Paola Roccabianca, Giuseppe Sarli, Cinzia Benazzi and Marco Luigi Bianchi
Animals 2024, 14(9), 1302; https://doi.org/10.3390/ani14091302 (registering DOI) - 25 Apr 2024
Abstract
A 5-year-old spayed female Breton dog was referred for a thyroid nodule. A total body CT scan evidenced multifocal hepatic nodules. Cytological liver samples were hemodiluted and non-diagnostic. Following a thyroidectomy, the histology was consistent with a follicular-compact thyroid carcinoma. On laparoscopy, most [...] Read more.
A 5-year-old spayed female Breton dog was referred for a thyroid nodule. A total body CT scan evidenced multifocal hepatic nodules. Cytological liver samples were hemodiluted and non-diagnostic. Following a thyroidectomy, the histology was consistent with a follicular-compact thyroid carcinoma. On laparoscopy, most hepatic lobes had multifocal dark-red nodules that were biopsied for histology. Microscopically, the hepatic parenchyma in the nodules was substituted by blood channels lined by bland spindle cells but adjacent to epithelioid neoplastic cells, single or in clusters, embedded in a moderate amount of edematous collagen matrix. These cells had optically empty cytoplasmic space, occasionally containing erythrocytes (microlumina). Spindle and epithelioid cells expressed membranous-to-cytoplasmic CD31 and FVIII-RA consistent with endothelial origin. Based on morphology and immunolabelling, a hemangioendothelioma with epithelioid differentiation was diagnosed. Lesions in the liver were initially stable, showing progression with time. The dog was alive with no systemic clinical signs 36 months after laparoscopy. Full article
(This article belongs to the Section Veterinary Clinical Studies)
67 pages, 1965 KiB  
Review
A Critical Review of the Modelling Tools for the Reactive Transport of Organic Contaminants
by Katarzyna Samborska-Goik and Marta Pogrzeba
Appl. Sci. 2024, 14(9), 3675; https://doi.org/10.3390/app14093675 (registering DOI) - 25 Apr 2024
Abstract
The pollution of groundwater and soil by hydrocarbons is a significant and growing global problem. Efforts to mitigate and minimise pollution risks are often based on modelling. Modelling-based solutions for prediction and control play a critical role in preserving dwindling water resources and [...] Read more.
The pollution of groundwater and soil by hydrocarbons is a significant and growing global problem. Efforts to mitigate and minimise pollution risks are often based on modelling. Modelling-based solutions for prediction and control play a critical role in preserving dwindling water resources and facilitating remediation. The objectives of this article are to: (i) to provide a concise overview of the mechanisms that influence the migration of hydrocarbons in groundwater and to improve the understanding of the processes that affect contamination levels, (ii) to compile the most commonly used models to simulate the migration and fate of hydrocarbons in the subsurface; and (iii) to evaluate these solutions in terms of their functionality, limitations, and requirements. The aim of this article is to enable potential users to make an informed decision regarding the modelling approaches (deterministic, stochastic, and hybrid) and to match their expectations with the characteristics of the models. The review of 11 1D screening models, 18 deterministic models, 7 stochastic tools, and machine learning experiments aimed at modelling hydrocarbon migration in the subsurface should provide a solid basis for understanding the capabilities of each method and their potential applications. Full article
(This article belongs to the Special Issue Environmental Bioaccumulation and Assessment of Toxic Elements)
17 pages, 2814 KiB  
Article
Potential Role of Circulating PD-L1+ Leukocytes as a Predictor of Response to Anti-PD-(L)1 Therapy in NSCLC Patients
by Georgia Anguera, Maria Mulet, Carlos Zamora, Rubén Osuna-Gómez, Andrés Barba, Ivana Sullivan, Jorgina Serra-López, Elisabet Cantó, Silvia Vidal and Margarita Majem
Biomedicines 2024, 12(5), 958; https://doi.org/10.3390/biomedicines12050958 (registering DOI) - 25 Apr 2024
Abstract
PD-(L)1 inhibitors are part of the treatment strategy for non-small cell lung cancer (NSCLC) although its efficacy is limited to certain patients. Our study aimed to identify patients who might benefit from anti-PD-(L)1 inhibitors by analyzing the PD-L1 expression on circulating leukocytes and [...] Read more.
PD-(L)1 inhibitors are part of the treatment strategy for non-small cell lung cancer (NSCLC) although its efficacy is limited to certain patients. Our study aimed to identify patients who might benefit from anti-PD-(L)1 inhibitors by analyzing the PD-L1 expression on circulating leukocytes and its evolution during treatment. One hundred thirteen NSCLC patients, according to their radiological response after 10–12 weeks of treatment, were classified into responders, stable, and progressive disease. Percentages of circulating PD-L1+ leukocytes, PD-L1+ platelets (PLTs), and leukocyte-PLT complexes were assessed using flow cytometry, and plasma concentrations of soluble immunomodulatory factors were quantified by ELISA. Responders exhibited significantly higher pre-treatment percentages of PD-L1+ neutrophils, PD-L1+ CD14+ cells, and PD-L1+ PLTs than progressors. The percentages of these populations decreased in responders post-treatment, contrasting with stables and progressors. PLTs notably contributed to PD-L1 expression in CD14+ cells and neutrophils. Plasma cytokine analysis revealed baseline differences only in IL-17 concentration among groups, whereas network analyses highlighted distinct association patterns between plasma molecules and PD-L1+ leukocytes after 10–12 weeks of treatment. Our findings suggest that pre-treatment assessment of circulating PD-L1+ neutrophils, PD-L1+ CD14+ cells, and PD-L1+ PLTs may be helpful in identifying NSCLC patients who are potential candidates for anti-PD-(L)1 therapy. Full article
(This article belongs to the Special Issue PD-1/PD-L1 and Immunotherapy)
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25 pages, 1114 KiB  
Article
Text Mining and Multi-Attribute Decision-Making-Based Course Improvement in Massive Open Online Courses
by Pei Yang, Ying Liu, Yuyan Luo, Zhong Wang and Xiaoli Cai
Appl. Sci. 2024, 14(9), 3654; https://doi.org/10.3390/app14093654 (registering DOI) - 25 Apr 2024
Abstract
As the leading platform of online education, MOOCs provide learners with rich course resources, but course designers are still faced with the challenge of how to accurately improve the quality of courses. Current research mainly focuses on learners’ emotional feedback on different course [...] Read more.
As the leading platform of online education, MOOCs provide learners with rich course resources, but course designers are still faced with the challenge of how to accurately improve the quality of courses. Current research mainly focuses on learners’ emotional feedback on different course attributes, neglecting non-emotional content as well as the costs required to improve these attributes. This limitation makes it difficult for course designers to fully grasp the real needs of learners and to accurately locate the key issues in the course. To overcome the above challenges, this study proposes an MOOC improvement method based on text mining and multi-attribute decision-making. Firstly, we utilize word vectors and clustering techniques to extract course attributes that learners focus on from their comments. Secondly, with the help of some deep learning methods based on BERT, we conduct a sentiment analysis on these comments to reveal learners’ emotional tendencies and non-emotional content towards course attributes. Finally, we adopt the multi-attribute decision-making method TOPSIS to comprehensively consider the emotional score, attention, non-emotional content, and improvement costs of the attributes, providing course designers with a priority ranking for attribute improvement. We applied this method to two typical MOOC programming courses—C language and Java language. The experimental findings demonstrate that our approach effectively identifies course attributes from reviews, assesses learners’ satisfaction, attention, and cost of improvement, and ultimately generates a prioritized list of course attributes for improvement. This study provides a new approach for improving the quality of online courses and contributes to the sustainable development of online course quality. Full article
13 pages, 768 KiB  
Review
Agricultural Disaster Prevention System: Insights from Taiwan’s Adaptation Strategies
by Ming-Hwi Yao, Yung-Heng Hsu, Ting-Yi Li, Yung-Ming Chen, Chun-Tang Lu, Chi-Ling Chen and Pei-Yu Shih
Atmosphere 2024, 15(5), 526; https://doi.org/10.3390/atmos15050526 (registering DOI) - 25 Apr 2024
Abstract
In response to the adverse effects of climate change-induced frequent extreme disasters on agricultural production and supply stability, this study develops a comprehensive agricultural disaster prevention system based on current adaptation strategies for mitigating agricultural meteorological disasters. The primary goal is to enhance [...] Read more.
In response to the adverse effects of climate change-induced frequent extreme disasters on agricultural production and supply stability, this study develops a comprehensive agricultural disaster prevention system based on current adaptation strategies for mitigating agricultural meteorological disasters. The primary goal is to enhance disaster preparedness and recovery through three core platforms: a fine-scale weather forecast service system, a crop disaster early warning system, and an agricultural information service platform for disasters. The results show that every major agricultural production township in Taiwan now has dedicated agricultural weather stations and access to refined weather forecasts. Additionally, a disaster prevention calendar for 76 important crops is established, integrating cultivation management practices and critical disaster thresholds for different growth periods. Utilizing this calendar, the crop disaster early warning system can provide timely disaster-related information and pre-disaster prevention assistance to farmers through various information dissemination tools. As a disaster approaches, the agricultural information service platform for disasters provides updates on current crop growth conditions. This service not only pinpoints areas at higher risk of disasters and vulnerable crop types but also offers mitigation suggestions to prevent potential damage. Administrative efficiency is then improved with a response mechanism incorporating drones and image analysis for early disaster detection and rapid response. In summary, the collaborative efforts outlined in this study demonstrate a proactive approach to agricultural disaster prevention. By leveraging technological advancements and interdisciplinary cooperation, the aim is to safeguard agricultural livelihoods and ensure food security in the face of climate-induced challenges. Full article
(This article belongs to the Special Issue Agriculture-Climate Interactions in Tropical Regions)
9 pages, 235 KiB  
Article
The Blow-Up of the Local Energy Solution to the Wave Equation with a Nontrivial Boundary Condition
by Yulong Liu
Mathematics 2024, 12(9), 1317; https://doi.org/10.3390/math12091317 (registering DOI) - 25 Apr 2024
Abstract
In this study, we examine the wave equation with a nontrivial boundary condition. The main target of this study is to prove the local-in-time existence and the blow-up in finite time of the energy solution. Through the construction of an auxiliary function and [...] Read more.
In this study, we examine the wave equation with a nontrivial boundary condition. The main target of this study is to prove the local-in-time existence and the blow-up in finite time of the energy solution. Through the construction of an auxiliary function and the imposition of appropriate conditions on the initial data, we establish the both lower and upper bounds for the blow-up time of the solution. Meanwhile, based on these estimates, we obtain the result of the local-in-time existence and the blow-up of the energy solution. This approach enhances our understanding of the dynamics leading to blow-up in the considered condition. Full article
19 pages, 2965 KiB  
Article
Structural, Optical and Dielectric Properties of Some Nanocomposites Derived from Copper Oxide Nanoparticles Embedded in Poly(vinylpyrrolidone) Matrix
by Carmen Gherasim, Mihai Asandulesa, Nicusor Fifere, Florica Doroftei, Daniel Tîmpu and Anton Airinei
Nanomaterials 2024, 14(9), 759; https://doi.org/10.3390/nano14090759 (registering DOI) - 25 Apr 2024
Abstract
Polymer nanocomposite films based on poly(vinyl pyrrolidone) incorporated with different amounts of copper oxide (CuO) nanoparticles were prepared by the solution casting technique. The PVP/CuO nanocomposites were analyzed by X-ray diffractometry (XRD), scanning electron microscopy, UV–Visible absorption spectroscopy and dielectric spectroscopy. The XRD [...] Read more.
Polymer nanocomposite films based on poly(vinyl pyrrolidone) incorporated with different amounts of copper oxide (CuO) nanoparticles were prepared by the solution casting technique. The PVP/CuO nanocomposites were analyzed by X-ray diffractometry (XRD), scanning electron microscopy, UV–Visible absorption spectroscopy and dielectric spectroscopy. The XRD analysis showed that the monoclinic structure of cupric oxide was maintained in the PVP host matrix. The key optical parameters, such as optical energy gap Eg, Urbach energy EU, absorption coefficient and refractive index, were estimated based on the UV-Vis data. The optical characteristics of the nanocomposite films revealed that their transmittance and absorption were influenced by the addition of CuO nanoparticles in the PVP matrix. Incorporation of CuO nanoparticles into the PVP matrix led to a significant decrease in band gap energy and an increase in the refractive index. The dielectric and electrical behaviors of the PVP/CuO nanocomposites were analyzed over a frequency range between 10 Hz and 1 MHz. The effect of CuO loading on the dielectric parameters (dielectric constant and dielectric loss) of the metal oxide nanocomposites was also discussed. Full article
12 pages, 512 KiB  
Article
The Current Achievements of Multi-Gene Panel Tests in Clinical Settings for Patients with Non-Small-Cell Lung Cancer
by Tadashi Sakaguchi, Akemi Iketani, Seiya Esumi, Maki Esumi, Yuta Suzuki, Kentaro Ito, Kentaro Fujiwara, Yoichi Nishii, Koji Katsuta, Hiroki Yasui, Osamu Taguchi and Osamu Hataji
Cancers 2024, 16(9), 1670; https://doi.org/10.3390/cancers16091670 (registering DOI) - 25 Apr 2024
Abstract
Some multi-gene panel tests have been implemented in clinical settings to guide targeted therapy in non-small-cell lung cancer (NSCLC) in Japan. The current performance of multi-gene panel tests under the condition that the Oncomine Dx Target Test (ODxTT) and Amoy Dx® Pan [...] Read more.
Some multi-gene panel tests have been implemented in clinical settings to guide targeted therapy in non-small-cell lung cancer (NSCLC) in Japan. The current performance of multi-gene panel tests under the condition that the Oncomine Dx Target Test (ODxTT) and Amoy Dx® Pan Lung Cancer PCR panel (AmoyDx-multi) are available remains relatively unknown. We retrospectively reviewed consecutive patients with NSCLC, whose FFPE samples were considered for genetic testing. We assessed the submission rates, the success rates, and the driver oncogene detection rates of multi-gene panel tests. A total of 225 patients were histologically newly diagnosed with NSCLC or diagnosed with a recurrence of NSCLC without a previous multi-gene panel test at our institution. Among the 225 patients, the FFPE samples of 212 patients (94.2%) were submitted for multi-gene panel testing, including 191 samples (84.9%) for the ODxTT and 21 samples (9.3%) for the AmoyDx-multi. Among the 212 samples submitted to multi-gene panel tests, the success rate was 99.5% (211/212). The detection rate of driver oncogene alterations for all histologies was 52.4% (111/212), and that for adenocarcinoma was 69.7% (106/152). A favorable submission rate and success rate of multi-gene panel tests were shown, along with a favorable detection rate in recent clinical settings. Full article
(This article belongs to the Section Cancer Biomarkers)
21 pages, 12256 KiB  
Article
GC-IMS-Based Volatile Characteristic Analysis of Hypsizygus marmoreus Dried by Different Methods
by Pufu Lai, Longxiang Li, Yingying Wei, Junzheng Sun, Baosha Tang, Yanrong Yang, Junchen Chen and Li Wu
Foods 2024, 13(9), 1322; https://doi.org/10.3390/foods13091322 (registering DOI) - 25 Apr 2024
Abstract
Gas chromatography–ion mobility spectroscopy (GC-IMS) was used to analyze the volatile components in dried Hypsizygus marmoreus of different drying methods, including hot air drying (HAD), heat pump drying (HPD), heated freeze-drying (HFD), and unheated freeze-drying (UFD). A total of 116 signal peaks corresponding [...] Read more.
Gas chromatography–ion mobility spectroscopy (GC-IMS) was used to analyze the volatile components in dried Hypsizygus marmoreus of different drying methods, including hot air drying (HAD), heat pump drying (HPD), heated freeze-drying (HFD), and unheated freeze-drying (UFD). A total of 116 signal peaks corresponding to 96 volatile compounds were identified, including 25 esters, 24 aldehydes, 23 alcohols, 13 ketones, 10 heterocyclic compounds, 8 carboxylic acids, 7 terpenes, 3 sulfur-containing compounds, 2 nitrogen-containing compounds, and 1 aromatic hydrocarbon. The total content of volatile compounds in H. marmoreus dried by the four methods, from highest to lowest, was as follows: HAD, HPD, HFD, and UFD. The main volatile compounds included carboxylic acids, alcohols, esters, and aldehydes. Comparing the peak intensities of volatile compounds in dried H. marmoreus using different drying methods, it was found that the synthesis of esters, aldehydes, and terpenes increased under hot drying methods such as HAD and HPD, while the synthesis of compounds containing sulfur and nitrogen increased under freeze-drying methods such as HFD and UFD. Nine common key characteristic flavor compounds of dried H. marmoreus were screened using relative odor activity values (ROAV > 1), including ethyl 3-methylbutanoate, acetic acid, 2-methylbutanal, propanal, methyl 2-propenyl sulfate, trimethylamine, 3-octanone, acetaldehide, and thiophene. In the odor description of volatile compounds with ROAV > 0.1, it was found that important flavor components such as trimethylamine, 3-octanone, (E)-2-octenal, and dimethyl disulfide are related to the aroma of seafood. Their ROAV order is HFD > UFD > HPD > HAD, indicating that H. marmoreus using the HFD method have the strongest seafood flavor. The research findings provide theoretical guidance for selecting drying methods and refining the processing of H. marmoreus. Full article
(This article belongs to the Section Food Analytical Methods)
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20 pages, 3897 KiB  
Article
Meshless Generalized Finite Difference Method Based on Nonlocal Differential Operators for Numerical Simulation of Elastostatics
by Yeying Zhou, Chunguang Li, Xinshan Zhuang and Zhifen Wang
Mathematics 2024, 12(9), 1316; https://doi.org/10.3390/math12091316 (registering DOI) - 25 Apr 2024
Abstract
This study proposes an innovative meshless approach that merges the peridynamic differential operator (PDDO) with the generalized finite difference method (GFDM). Based on the PDDO theory, this method introduces a new nonlocal differential operator that aims to reduce the pre-assumption required for the [...] Read more.
This study proposes an innovative meshless approach that merges the peridynamic differential operator (PDDO) with the generalized finite difference method (GFDM). Based on the PDDO theory, this method introduces a new nonlocal differential operator that aims to reduce the pre-assumption required for the PDDO method and simplify the calculation process. By discretizing through the particle approximation method, this technique proficiently preserves the PDDO’s nonlocal features, enhancing the numerical simulation’s flexibility and usability. Through the numerical simulation of classical elastic static problems, this article focuses on the evaluation of the calculation accuracy, calculation efficiency, robustness, and convergence of the method. This method is significantly stronger than the finite element method in many performance indicators. In fact, this study demonstrates the practicability and superiority of the proposed method in the field of elastic statics and provides a new approach to more complex problems. Full article
12 pages, 12748 KiB  
Article
High-Bandwidth Lumped Mach-Zehnder Modulators Based on Thin-Film Lithium Niobate
by Peng Yang, Siwei Sun, Yuqiang Zhang, Rui Cao, Huimin He, Haiyun Xue and Fengman Liu
Photonics 2024, 11(5), 399; https://doi.org/10.3390/photonics11050399 (registering DOI) - 25 Apr 2024
Abstract
Recently, lumped Mach-Zehnder Modulators (MZMs) have received renewed attention due to their potential for low power consumption and compact size. However, the practicality of lumped MZMs with conventional lumped electrodes (C-LEs) is limited by their lower electro-optical (EO) bandwidth. The reduction in EO [...] Read more.
Recently, lumped Mach-Zehnder Modulators (MZMs) have received renewed attention due to their potential for low power consumption and compact size. However, the practicality of lumped MZMs with conventional lumped electrodes (C-LEs) is limited by their lower electro-optical (EO) bandwidth. The reduction in EO bandwidth results from the inherent trade-off between EO bandwidth and half-wave voltage length product (VπL) within the C-LE architecture. This paper proposes a thin-film lithium niobate (TFLN)-based lumped MZM with capacitively-loaded lumped electrodes (CL-LEs). The purely linear EO effect of the LN eliminates the parasitic capacitance in the doped PN junction and enhances the EO bandwidth. Furthermore, the CL-LE structure can break the limitation between EO bandwidth and VπL inherent in the C-LE design. Simulations show the proposed device achieves a high EO bandwidth of 32.4 GHz and a low VπL of 1.15 V·cm. Due to the reduced capacitance and lower VπL, the power consumption of the device is as low as 0.1 pJ/bit. Simulation results indicate that the open-eye diagrams are achieved at 64 Gb/s for 1.5 mm TFLN lumped MZM, with an ER of 2.97 dB. Consequently, the proposed device architecture substantially enhances the performance of lumped MZMs, showing promise for application in short-reach optical interconnects within data centers. Full article
(This article belongs to the Section Optoelectronics and Optical Materials)
21 pages, 1095 KiB  
Article
Optimizing Crop Water Productivity in Greenhouse Pepper
by Susana Zapata-García, Abdelmalek Temnani, Pablo Berríos, Pedro J. Espinosa, Claudia Monllor and Alejandro Pérez-Pastor
Agronomy 2024, 14(5), 902; https://doi.org/10.3390/agronomy14050902 (registering DOI) - 25 Apr 2024
Abstract
Although advanced production systems have been developed in the last 20 years, water scarcity is still a growing problem in agriculture. This study aims to evaluate the effect of different strategies that combine the application of seaweed and microbial biostimulants with regulated deficit [...] Read more.
Although advanced production systems have been developed in the last 20 years, water scarcity is still a growing problem in agriculture. This study aims to evaluate the effect of different strategies that combine the application of seaweed and microbial biostimulants with regulated deficit irrigation (RDI) strategies on the irrigation water productivity (WPI), fruit quality parameters and soil enzymatic activity in pepper plants (Capsicum annum sp.) under two commercial greenhouse conditions. In each trial, two treatments were applied: (i) irrigation according to Farmer criteria without biostimulant applications and (ii) a combined treatment of RDI and the same biostimulation program, composed of Bacillus paralicheniformis and Ascophillum nodosum extracts. RDI was applied in different phenological stages in each greenhouse after the establishment until the 1st harvest in trial 1 or during the ripening and harvest period in trial 2. On average, the irrigation was reduced by 600 m3 ha−1 compared to the Farmer irrigation schedule. In both trials, biostimulation promoted an increase in fruit numbers, punctually in trial 1, leading to yield precocity, or generally in trial 2, obtaining a higher yield. Globally, WPI was increased when RDI was combined with biostimulation. This combined treatment also enhanced the root water absorption and improved the soil enzymatic activity in both greenhouses, suggesting that nutrients in the soil would become more available to plants. Thus, the combined action of biostimulation under different RDI strategies has been proved to be a useful strategy to improve agricultural sustainability. Full article
(This article belongs to the Special Issue Assessment and Mapping of Soil Water Balance)
16 pages, 3661 KiB  
Article
Coupled Processes at Micro- and Macroscopic Levels for Long-Term Performance Assessment Studies of Nuclear Waste Repositories
by Hua Shao, Eike Radeisen, Jürgen Hesser, Wenqing Wang and Olaf Kolditz
Minerals 2024, 14(5), 453; https://doi.org/10.3390/min14050453 (registering DOI) - 25 Apr 2024
Abstract
Performance assessment of nuclear waste repositories requires state-of-the-art knowledge of radionuclide transport properties. Additionally, the short-term development under thermal pulses and the long-term development of the near field—due to influences such as gas generation—must be evaluated. Key thermal-hydro-mechanical-chemical processes are strongly coupled on [...] Read more.
Performance assessment of nuclear waste repositories requires state-of-the-art knowledge of radionuclide transport properties. Additionally, the short-term development under thermal pulses and the long-term development of the near field—due to influences such as gas generation—must be evaluated. Key thermal-hydro-mechanical-chemical processes are strongly coupled on different spatial and temporal scales. To understand these coupling mechanisms, numerous material models and numerical codes have been developed. However, the existing constitutive approaches—which have been adapted to describe small-scale laboratory experiments and validated against real-scale field observations—are often unable to capture long-term material behavior with sufficient precision. To build the confidence, a more comprehensive understanding of the system at micro- and macroscopic scales is required. Most observed macroscopic processes result from microscopic changes in the crystal structure and/or crystalline aggregates, as well as changes in material properties under the influence of various factors. To characterize these physical fields in crystals, microscopic investigations, such as visualization, or geophysical methods are introduced to verify the understanding at the microscale. Two cases are demonstrated for the presented concept using microscale information: one deals with the mechanically and thermally driven migration of fluid inclusions in rock salt, the other with dilatancy-controlled gas transport in water-saturated clay material. Full article
16 pages, 2003 KiB  
Article
A Deep Learning Method for Log Diameter Measurement Using Wood Images Based on Yolov3 and DeepLabv3+
by Zhenglan Lu, Huilu Yao, Yubiao Lyu, Sheng He, Heng Ning, Yuhui Yu, Lixia Zhai and Lin Zhou
Forests 2024, 15(5), 755; https://doi.org/10.3390/f15050755 (registering DOI) - 25 Apr 2024
Abstract
Wood volume is an important indicator in timber trading, and log diameter is one of the primary parameters used to calculate wood volume. Currently, the most common methods for measuring log diameters are manual measurement or visual estimation by log scalers, which are [...] Read more.
Wood volume is an important indicator in timber trading, and log diameter is one of the primary parameters used to calculate wood volume. Currently, the most common methods for measuring log diameters are manual measurement or visual estimation by log scalers, which are laborious, time consuming, costly, and error prone owing to the irregular placement of logs and large numbers of roots. Additionally, this approach can easily lead to misrepresentation of data for profit. This study proposes a model for automatic log diameter measurement that is based on deep learning and uses images to address the existing problems. The specific measures to improve the performance and accuracy of log-diameter detection are as follows: (1) A dual network model is constructed combining the Yolov3 algorithm and DeepLabv3+ architecture to adapt to different log-end color states that considers the complexity of log-end faces. (2) AprilTag vision library is added to estimate the camera position during image acquisition to achieve real-time adjustment of the shooting angle and reduce the effect of log-image deformation on the results. (3) The backbone network is replaced with a MobileNetv2 convolutional neural network to migrate the model to mobile devices, which reduces the number of network parameters while maintaining detection accuracy. The training results show that the mean average precision of log-diameter detection reaches 97.28% and the mean intersection over union (mIoU) of log segmentation reaches 92.22%. Comparisons with other measurement models demonstrate that the proposed model is accurate and stable in measuring log diameter under different environments and lighting conditions, with an average accuracy of 96.26%. In the forestry test, the measurement errors for the volume of an entire truckload of logs and a single log diameter are 1.20% and 0.73%, respectively, which are less than the corresponding error requirements specified in the industry standards. These results indicate that the proposed method can provide a viable and cost-effective solution for measuring log diameters and offering the potential to improve the efficiency of log measurement and promote fair trade practices in the lumber industry. Full article
(This article belongs to the Section Wood Science and Forest Products)
13 pages, 2581 KiB  
Article
Do Invasive Jorō Spiders (Trichonephila clavata) from Asia Avoid Eating Unpalatable Monarch Butterflies (Danaus plexippus) in North America?
by Andrew K. Davis, Wilson Townsend Morris, Emma Hobbs and Ella Blakely
Insects 2024, 15(5), 309; https://doi.org/10.3390/insects15050309 (registering DOI) - 25 Apr 2024
Abstract
An invasive spider from East Asia has established in the U.S. southeast (the “jorō spider,” Trichonephila clavata) and is rapidly expanding its range. Studies assessing the impact of this species are needed, including how expansive its diet is. An open question is [...] Read more.
An invasive spider from East Asia has established in the U.S. southeast (the “jorō spider,” Trichonephila clavata) and is rapidly expanding its range. Studies assessing the impact of this species are needed, including how expansive its diet is. An open question is whether monarch butterflies, Danaus plexippus, are a potential prey item for this spider, given that jorō spiders do not coexist with monarchs in their native range. Since monarch larvae feed on milkweed, they sequester cardiac glycosides into their adult tissues, rendering them unpalatable to many predators. At sites within northeast Georgia, we staged a series of trials (n = 61) where we tossed monarchs into jorō spider webs and, for comparison, performed similar trials with another aposematic species, gulf fritillary (Agraulis vanilla), and a palatable species, tiger swallowtail (Papilio glaucus). We recorded the outcome of the trials, which included whether the spider attacked or did not attack the prey. We also conducted a visual survey during the same fall season to look for evidence of jorō spiders consuming monarchs naturally. Our findings revealed that jorō spiders avoided eating monarchs; spiders only attacked monarchs 20% of the time, which was significantly less than the attack rates of similarly sized or larger butterflies: 86% for gulf fritillaries and 58% for tiger swallowtails. Some jorō spiders even removed monarchs from their webs. From our visual surveys of the surrounding area, we found no evidence of natural monarch consumption and, in general, butterflies made up only a fraction of the jorō spider diet. We conclude that jorō spiders appear to recognize monarch butterflies as being unpalatable, even without having a prior history with the species. This invokes questions about how these spiders can immediately recognize their unpalatability without touching the butterflies. Full article
(This article belongs to the Section Other Arthropods and General Topics)
9 pages, 329 KiB  
Article
The Role of Psychosomatic Traits in Tailored Workup for Anterior Cervical Discectomy and Fusion—A Case Series
by Marco Battistelli, Edoardo Mazzucchi, Mario Muselli, Filippo Maria Polli, Gianluca Galieri, Paola Bazzu, Fabrizio Pignotti, Alessandro Olivi, Giovanni Sabatino and Giuseppe La Rocca
J. Pers. Med. 2024, 14(5), 454; https://doi.org/10.3390/jpm14050454 (registering DOI) - 25 Apr 2024
Abstract
Study design: Prospective study. Objective: To evaluate the influence of preoperatively assessed psychosomatic traits on postoperative pain, disability, and quality of life outcomes. Summary of background data: Anterior cervical discectomy and fusion (ACDF) is a widely employed surgical procedure for treating cervical spondylosis. [...] Read more.
Study design: Prospective study. Objective: To evaluate the influence of preoperatively assessed psychosomatic traits on postoperative pain, disability, and quality of life outcomes. Summary of background data: Anterior cervical discectomy and fusion (ACDF) is a widely employed surgical procedure for treating cervical spondylosis. Despite its effectiveness, various studies have reported non-success rates in terms of alleviating disability and pain. Psychological factors have become increasingly recognized as critical determinants of surgical outcomes in various medical disciplines. The full extent of their impact within the context of ACDF remains insufficiently explored. This case series aims to assess the influence of preoperative psychological profiling on long-term pain, disability and quality of life outcomes. Methods: We conducted a prospective cohort study of prospectively collected data from 76 consecutive patients who underwent ACDF with PEEK inter-fixed cages from July 2019 to November 2021. The preoperative psychological traits were assessed using the Symptom Checklist 90 (SCL-90) questionnaire. The Oswestry Disability Index (ODI), Visual Analogue Scale (VAS), Neck Disability index (NDI), EuroQol-5D (EQ-5D), and Short Form-36 (SF-36) were collected preoperatively, one month postoperatively, and at least one year after the surgical procedure. Results: The correlation analyses revealed associations between psychosomatic traits and multiple preoperative and postoperative outcome measures. The univariate analyses and linear regression analyses demonstrated the influence of the Global Severity Index (GSI) over the final follow-up scores for the ODI, VAS, NDI, EQ-5D, and SF-36. The GSI consistently exhibited a stronger correlation with the final follow-up pain, disability, and quality of life outcomes with respect to the correspondent preoperative values. Conclusion: This study highlights the importance of psychosomatic traits as predictive factors for ACDF outcomes and emphasizes their relevance in preoperative assessment for informing patients about realistic expectations. The findings underscore the need to consider psychological profiles in the preoperative workup, opening avenues for research into medications and psychological therapies. Recognizing the influence of psychosocial elements informs treatment strategies, fostering tailored surgical approaches and patient care. Full article
(This article belongs to the Special Issue Precision Medicine in Neurosurgery)
18 pages, 6275 KiB  
Article
The Influence of the Mechanical Compliance of a Substrate on the Morphology of Nanoporous Gold Thin Films
by Sadi Shahriar, Kavya Somayajula, Conner Winkeljohn, Jeremy K. Mason and Erkin Seker
Nanomaterials 2024, 14(9), 758; https://doi.org/10.3390/nano14090758 (registering DOI) - 25 Apr 2024
Abstract
Nanoporous gold (np-Au) has found its use in applications ranging from catalysis to biosensing, where pore morphology plays a critical role in performance. While the morphology evolution of bulk np-Au has been widely studied, knowledge about its thin-film form is limited. This work [...] Read more.
Nanoporous gold (np-Au) has found its use in applications ranging from catalysis to biosensing, where pore morphology plays a critical role in performance. While the morphology evolution of bulk np-Au has been widely studied, knowledge about its thin-film form is limited. This work hypothesizes that the mechanical compliance of the thin film substrate can play a critical role in the morphology evolution. Via experimental and finite-element-analysis approaches, we investigate the morphological variation in np-Au thin films deposited on compliant silicone (PDMS) substrates of a range of thicknesses anchored on rigid glass supports and compare those to the morphology of np-Au deposited on glass. More macroscopic (10 s to 100 s of microns) cracks and discrete islands form in the np-Au films on PDMS compared to on glass. Conversely, uniformly distributed microscopic (100 s of nanometers) cracks form in greater numbers in the np-Au films on glass than those on PDMS, with the cracks located within the discrete islands. The np-Au films on glass also show larger ligament and pore sizes, possibly due to higher residual stresses compared to the np-Au/PDMS films. The effective elastic modulus of the substrate layers decreases with increasing PDMS thickness, resulting in secondary np-Au morphology effects, including a reduction in macroscopic crack-to-crack distance, an increase in microscopic crack coverage, and a widening of the microscopic cracks. However, changes in the ligament/pore widths with PDMS thickness are negligible, allowing for independent optimization for cracking. We expect these results to inform the integration of functional np-Au films on compliant substrates into emerging applications, including flexible electronics. Full article
(This article belongs to the Special Issue Design, Fabrication and Applications of Nanoporous Materials)
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11 pages, 516 KiB  
Article
Radiological Comparison of Canal Fill between Collared and Non-Collared Femoral Stems: A Two-Year Follow-Up after Total Hip Arthroplasty
by Itay Ashkenazi, Amit Benady, Shlomi Ben Zaken, Shai Factor, Mohamed Abadi, Ittai Shichman, Samuel Morgan, Aviram Gold, Nimrod Snir and Yaniv Warschawski
J. Imaging 2024, 10(5), 99; https://doi.org/10.3390/jimaging10050099 (registering DOI) - 25 Apr 2024
Abstract
Introduction: Collared femoral stems in total hip arthroplasty (THA) offer reduced subsidence and periprosthetic fractures but raise concerns about fit accuracy and stem sizing. This study compares collared and non-collared stems to assess the stem–canal fill ratio (CFR) and fixation indicators, aiming to [...] Read more.
Introduction: Collared femoral stems in total hip arthroplasty (THA) offer reduced subsidence and periprosthetic fractures but raise concerns about fit accuracy and stem sizing. This study compares collared and non-collared stems to assess the stem–canal fill ratio (CFR) and fixation indicators, aiming to guide implant selection and enhance THA outcomes. Methods: This retrospective single-center study examined primary THA patients who received Corail cementless stems between August 2015 and October 2020, with a minimum of two years of radiological follow-up. The study compared preoperative bone quality assessments, including the Dorr classification, the canal flare index (CFI), the morphological cortical index (MCI), and the canal bone ratio (CBR), as well as postoperative radiographic evaluations, such as the CFR and component fixation, between patients who received a collared or a non-collared femoral stem. Results: The study analyzed 202 THAs, with 103 in the collared cohort and 99 in the non-collared cohort. Patients’ demographics showed differences in age (p = 0.02) and ASA classification (p = 0.01) but similar preoperative bone quality between groups, as suggested by the Dorr classification (p = 0.15), CFI (p = 0.12), MCI (p = 0.26), and CBR (p = 0.50). At the two-year follow-up, femoral stem CFRs (p = 0.59 and p = 0.27) were comparable between collared and non-collared cohorts. Subsidence rates were almost doubled for non-collared patients (19.2 vs. 11.7%, p = 0.17), however, not to a level of clinical significance. Conclusion: The findings of this study show that both collared and non-collared Corail stems produce comparable outcomes in terms of the CFR and radiographic indicators for stem fixation. These findings reduce concerns about stem under-sizing and micro-motion in collared stems. While this study provides insights into the collar design debate in THA, further research remains necessary. Full article
(This article belongs to the Section Medical Imaging)

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