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  • 1
    Publication Date: 2024-01-12
    Keywords: Porifera Macaronesia ; sponges ; taxonomy ; Clathria ; Antho ; Artemisina ; Northwest Africa ; Macaronesia ; Saharan Upwelling ; Sahelian Upwelling
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 2
    Publication Date: 2024-01-12
    Description: The giant barrel sponge Xestospongia testudinaria is an ecologically important species that is widely distributed across the Indo-Pacific. Little is known, however, about the precise biogeographic distribution and the amount of morphological and genetic variation in this species. Here we provide the first detailed, fine-scaled (〈200 km2) study of the morphological and genetic composition of X. testudinaria around Lembeh Island, Indonesia. Two mitochondrial (CO1 and ATP6 genes) and one nuclear (ATP synthase \xce\xb2 intron) DNA markers were used to assess genetic variation. We identified four distinct morphotypes of X. testudinaria around Lembeh Island. These morphotypes were genetically differentiated with both mitochondrial and nuclear markers. Our results indicate that giant barrel sponges around Lembeh Island, which were all morphologically identified as X. testudinaria, consist of at least two different lineages that appear to be reproductively isolated. The first lineage is represented by individuals with a digitate surface area, CO1 haplotype C5, and is most abundant around the harbor area of Bitung city. The second lineage is represented by individuals with a predominantly smooth surface area, CO1 haplotype C1 and can be found all around Lembeh Island, though to a lesser extent around the harbor of Bitung city. Our findings of two additional unique genetic lineages suggests the presence of an even broader species complex possibly containing more than two reproductively isolated species. The existence of X. testudinaria as a species complex is a surprising result given the size, abundance and conspicuousness of the sponge.
    Keywords: Xestospongia testudinaria ; Indo-Pacific ; DNA ; genetic composition ; sponge
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 3
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    Nederlands Centrum voor Biodiversiteit Naturalis ; European Invertebrate Survey - Nederland, Leiden
    Publication Date: 2024-01-12
    Keywords: biodiversiteit ; Nederland ; sponzen
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/conferenceObject
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  • 4
    Publication Date: 2024-01-12
    Description: The existence of multiple independently derived populations in landlocked marine lakes provides an opportunity for fundamental research into the role of isolation in population divergence and speciation in marine taxa. Marine lakes are landlocked water bodies that maintain a marine character through narrow submarine connections to the sea and could be regarded as the marine equivalents of terrestrial islands. The sponge Suberites diversicolor (Porifera: Demospongiae: Suberitidae) is typical of marine lake habitats in the Indo-Australian Archipelago. Four molecular markers (two mitochondrial and two nuclear) were employed to study genetic structure of populations within and between marine lakes in Indonesia and three coastal locations in Indonesia, Singapore and Australia. Within populations of S. diversicolor two strongly divergent lineages (A & B) (COI: p = 0.4% and ITS: p = 7.3%) were found, that may constitute cryptic species. Lineage A only occurred in Kakaban lake (East Kalimantan), while lineage B was present in all sampled populations. Within lineage B, we found low levels of genetic diversity in lakes, though there was spatial genetic population structuring. The Australian population is genetically differentiated from the Indonesian populations. Within Indonesia we did not record an East-West barrier, which has frequently been reported for other marine invertebrates. Kakaban lake is the largest and most isolated marine lake in Indonesia and contains the highest genetic diversity with genetic variants not observed elsewhere. Kakaban lake may be an area where multiple putative refugia populations have come into secondary contact, resulting in high levels of genetic diversity and a high number of endemic species.
    Keywords: Suberites diversicolor ; Indo-Australian Archipelago ; marine lakes ; evolution
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 5
    Publication Date: 2024-02-15
    Description: With declining biodiversity worldwide, a better understanding of species diversity and their relationships is imperative for conservation and management efforts. Marine sponges are species-rich ecological key players on coral reefs, but their species diversity is still poorly understood. This is particularly true for the demosponge order Haplosclerida, whose systematic relationships are contentious due to the incongruencies between morphological and molecular phylogenetic hypotheses. The single gene markers applied in previous studies did not resolve these discrepancies. Hence, there is a high need for a genome-wide approach to derive a phylogenetically robust classification and understand this group\'s evolutionary relationships. To this end, we developed a target enrichment-based multilocus probe assay for the order Haplosclerida using transcriptomic data. This probe assay consists of 20,000 enrichment probes targeting 2956 ultraconserved elements in coding (i.e. exon) regions across the genome and was tested on 26 haplosclerid specimens from the Red Sea. Our target-enrichment approach correctly placed our samples in a well-supported phylogeny, in agreement with previous haplosclerid molecular phylogenies. Our results demonstrate the applicability of high-resolution genomic methods in a systematically complex marine invertebrate group and provide a promising approach for robust phylogenies of Haplosclerida. Subsequently, this will lead to biologically unambiguous taxonomic revisions, better interpretations of biological and ecological observations and new avenues for applied research, conservation and managing declining marine diversity.
    Keywords: bait design ; exon ; phylogenetic markers ; target capture ; ultraconserved element
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 6
    Publication Date: 2024-02-14
    Description: Marine karst ecosystems exist at the land-sea interface and are characterised by underwater formations sculpted over time by \nthe action of seawater. Submerged caves and crevices of these ecosystems host a rich array of marine life of which sponges are \namong the most abundant and diverse components. In the present study, we describe elements of the sponge fauna sampled \nfrom a unique karst ecosystem at a remote island, Orchid Island, of the southeastern coast of Taiwan. The present study \nincludes several understudied sponge taxa, including sclerosponges (Acanthochaetetes wellsi, and Astrosclera willeyana) and \nseveral lithistid species from dark, shallow-water caves. Prokaryotic communities were obtained from a total of 22 demosponge species, of which 11 are potentially new to science. The tetracladinid, lithistids harboured prokaryotic communities, \nwhich clustered separately from all other sponge species, contrasting with the non-tetracladinid, lithistid Vetulina incrustans. \nThe tetracladinid, lithistids, furthermore, formed two distinct clusters with species of the Spirophorina suborder clustering \napart from those of the Astrophorina suborder. The sclerosponge A. wellsi also harboured a distinct prokaryotic community \nin terms of composition including fve unique, abundant OTUs with relatively low sequence similarities to organisms in \nGenBank. All cave sponges were enriched with SAR202 members, a group of bacteria known for their role in the degradation of recalcitrant compounds. The highest relative abundance of SAR202 was found in A. wellsi. We propose that the cave \nsponges of Orchid Island may play an as-yet uncharted role in nutrient dynamics at the land-sea interface.
    Keywords: 16S ; Composition ; Porifera ; Prokaryotes ; Taiwan
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 7
    Publication Date: 2024-04-26
    Description: Dynamics of microbiomes through time are fundamental regarding survival and resilience of their hosts when facing environmental alterations. As for marine species with commercial applications, such as marine sponges, assessing the temporal change of prokaryotic communities allows us to better consider the adaptation of sponges to aquaculture designs. The present study aims to investigate the factors shaping the microbiome of the sponge Dactylospongia metachromia, in a context of aquaculture development in French Polynesia, Rangiroa, Tuamotu archipelago. A temporal approach targeting explants collected during farming trials revealed a relative high stability of the prokaryotic diversity, meanwhile a complementary biogeographical study confrmed a spatial specifcity amongst samples at diferent longitudinal scales. Results from this additional spatial analysis confrmed that diferences in prokaryotic communities might frst be explained by environmental changes (mainly temperature and salinity), while no signifcant efect of the host phylogeny was observed. The core community of D. metachromia is thus characterized by a high spatiotemporal constancy, which is a good prospect for the sustainable exploitation of this species towards drug development. Indeed, a microbiome stability across locations and throughout the farming process, as evidenced by our results, should go against a negative infuence of sponge translocation during in situ aquaculture.
    Keywords: Holobiont ; Marine sponges ; Microbiome ; Farming trials ; Biogeography ; French Polynesia
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 8
    Publication Date: 2024-03-07
    Description: Sponges are abundant components of coral reefs known for their filtration capabilities and intricate interactions with microbes. They \nplay a crucial role in maintaining the ecological balance of coral reefs. Humic substances (HS) affect bacterial communities across \nterrestrial, freshwater, and marine ecosystems. However, the specific effects of HS on sponge-associated microbial symbionts have \nlargely been neglected. Here, we used a randomized-controlled microcosm setup to investigate the independent and interactive effects of HS, elevated temperature, and UVB radiation on bacterial communities associated with the sponge Chondrilla sp. Our results \nindicated the presence of a core bacterial community consisting of relatively abundant members, apparently resilient to the tested \nenvironmental perturbations, alongside a variable bacterial community. Elevated temperature positively affected the relative abundances of ASVs related to Planctomycetales and members of the families Pseudohongiellaceae and Hyphomonadaceae. HS increased \nthe relative abundances of several ASVs potentially involved in recalcitrant organic matter degradation (e.g., the BD2-11 terrestrial \ngroup, Saccharimonadales, and SAR202 clade). There was no significant independent effect of UVB and there were no significant \ninteractive effects of HS, heat, and UVB on bacterial diversity and composition. The significant, independent impact of HS on the \ncomposition of sponge bacterial communities suggests that alterations to HS inputs may have cascading effects on adjacent marine \necosystems.
    Keywords: climate change ; coral reefs ; DOM ; sponge microbiome ; terrestrial organic matter
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 9
    Publication Date: 2024-01-12
    Description: Sponge assemblages were investigated in the Spermonde Archipelago, southwestern Sulawesi, Indonesia. In this study spatial patterns of sponge similarity among sites were significantly related to remotely sensed environmental variables, the degree of human settlement and depth, but not to the distance between sites. Both oviparous and viviparous species groups responded to similar environmental constraints, and differences in similarity were unrelated to the distance between sites. The degree of human settlement, however, was significantly related to variation in the composition of viviparous, but not oviparous species. Our results demonstrate, most importantly, the utility of remotely sensed data in predicting the spatial turnover of diverse species assemblages such as sponges. Secondly, they show that patterns of human settlement in the Spermonde Archipelago appear to be affecting patterns of sponge beta diversity. These results highlight the need to assess and protect marine areas in biodiversity hotspots such as Indonesia.
    Keywords: Biodiversity ; Indonesia ; Porifera ; similarity ; spatial
    Repository Name: National Museum of Natural History, Netherlands
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  • 10
    Publication Date: 2024-01-12
    Description: A new sponge species Amphimedon denhartogi spec. nov., belonging to the family Niphatidae of the order Haplosclerida, is described from 3 localities in Indonesia: Tulamben (NE Bali), Siladen Island (NE Sulawesi) and Kambing Island (SW Sulawesi). Amphimedon denhartogi spec. nov. is characterised by its growth form of thinly flabellate branches, the occurrence of star-shaped oscules over one side of the sponge body, and by its small strongyles, and can hardly be confused with another species. All specimens were found in similar habitats, at around 40-45 m of depth on steep sandy slopes.
    Keywords: Porifera ; Haplosclerida ; Indonesia ; new species ; Amphimedon
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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