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  • 1
    ISSN: 1573-904X
    Keywords: brain-derived neurotrophic factor (BDNF) ; metal-catalyzed oxidation (MCO) ; cyanogen bromide (CNBr) ; methionine sulfoxide ; quality control ; protein conformation
    Source: Springer Online Journal Archives 1860-2000
    Topics: Chemistry and Pharmacology
    Notes: Abstract Purpose. We examined the metal-catalyzed oxidation of brain-derivedneurotrophic factor (BDNF) using the Cu(II)/ascorbate/O2 modeloxidative system. Methods. Electrospray ionization mass spectrometry, peptide mappingand amino acid analysis were utilized to determine the nature of thecovalent modification induced by the metal-catalyzed oxidative system.Additionally, analytical ultracentrifugation, the Bradford assay, circulardichroism and ANSA dye-binding were used to determine the natureof any conformational changes induced by the oxidation. Results. Exposure of BDNF to the Cu(II)/ascorbate/O2 system led tothe modification of ca. 35% of Met92 to its sulfoxide, and to subsequentconformational changes. The proteolytic digestion procedure wassensitive to this conformational change, and was unable to detect themodification. Chemical digestion with CNBr, however, was not sensitive tothis change, and allowed for the identification of the site ofmodification. Conclusions. The modification of Met92 to its sulfoxide rendered theoxidized BDNF inaccessible to proteolytic digestion, due toconformational changes associated with the oxidation.
    Type of Medium: Electronic Resource
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  • 2
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    Springer
    In:  EPIC3Global Ecology and Oceanography of Harmful Algal Blooms, Global Ecology and Oceanography of Harmful Algal Blooms, Springer, 16 p., pp. 187-203, ISBN: 978-3-319-7006
    Publication Date: 2018-06-23
    Description: Coastal systems partially surrounded by land such as coastal embayments, estuaries and fjords have characteristics that affect the development of harmful algal blooms. Among these, shallow water depths and geophysical constraints from surrounding land masses favour stronger links between the water column and bottom sediments. Typical circulation patterns (e.g., in estuaries) can limit the exchange with offshore waters and favour cell retention. Sub-mesoscale and high-frequency processes are particularly important physical factors that influence pattern and persistence of HABs in coastal systems. Coupling with benthic nutrient fluxes or seed banks from the bottom is enhanced as the degree of physical robustness of coastal systems decreases. The links between bottom cyst distribution patterns and intensity or extension of HABs are still not fully understood. The importance of intra-specific diversity has been highlighted for many HAB species but tools are needed to assist in situ identification of these various life cycle stages. Alternative metabolic strategies, such as mixotrophy or reliance on organic nutrients and allelochemically mediated species interactions, can play a critical role in the development of HA blooms particularly in semi-confined coastal environments. Future work should address the influence of climate change and of coastal aquaculture on blooms of these harmful species in coastal environments.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , peerRev
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  • 3
    Publication Date: 2017-05-29
    Description: Harmful algal blooms (HABs) are natural phenomena that result from the interplay of biological, chemical, physical, and sedimentary processes occurring at different temporal and spatial scales. This paper provides an integrated description of HAB dynamics occurring at the mesoscale (10–100 km, sensu Haury et al., 1978) in confined and semi-confined coastal environments and under stratified water column conditions in a diversity of habitats where HAB events occur. It also focuses on relevant aspects occurring at fine-scale and even smaller cellular scales that are critical to species interactions with their environments. Examples include the key role of life-history stages in the recurrence of HABs in certain embayments; the physical-biological interactions driving the formation, maintenance, and decline of thin layers of plankton, including harmful microalgae; the fascinating, but poorly understood, domain of small-scale chemical interactions between HAB species and components of the food web; the potential link between human activities and climate change; and the trends in HAB occurrence. Development of new observing and sampling technologies and of new modeling approaches has resulted in greater understanding of these phenomena. Two Core Research Projects initiated under the GEOHAB Implementation Strategy, “HABs in Fjords and Coastal Embayments” and “HABs in Stratified Systems,” are discussed and priorities for future research toward improving the management and mitigation of HAB impacts are outlined.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 4
    Publication Date: 2024-02-01
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; beta-Carotene, beta,beta-Carotene; Chlorophyll a; Chlorophyll a allomers; Chlorophyll b; Chlorophyll c2; Chlorophyll c3; Chlorophyllide a; Chlorophyllide a, derivative; DATE/TIME; DEPTH, water; Diadinoxanthin; Diatoxanthin; Fucoxanthin; JGOFS; JGOFS methods; Joint Global Ocean Flux Study; Line_P; Lutein; MULT; Multiple investigations; P12; Peridinin; Pheophorbide a2; Pheophorbide a3; Pheophorbide a4; Pheophytin a; Pheophytin b; Pyropheophorbide a; Pyropheophytin a; Sample method; Violaxanthin; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 162 data points
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  • 5
    Publication Date: 2024-02-01
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; beta-Carotene, beta,beta-Carotene; Chlorophyll a; Chlorophyll a allomers; Chlorophyll b; Chlorophyll c2; Chlorophyll c3; Chlorophyllide a; Chlorophyllide a, derivative; DATE/TIME; DEPTH, water; Diadinoxanthin; Diatoxanthin; Fucoxanthin; JGOFS; JGOFS methods; Joint Global Ocean Flux Study; Line_P; Lutein; MULT; Multiple investigations; P12; Peridinin; Pheophorbide a2; Pheophorbide a3; Pheophorbide a4; Pheophytin a; Pheophytin b; Pyropheophorbide a; Pyropheophytin a; Sample method; Violaxanthin; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 270 data points
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  • 6
    Publication Date: 2024-02-01
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; beta-Carotene, beta,beta-Carotene; Chlorophyll a; Chlorophyll a allomers; Chlorophyll b; Chlorophyll c2; Chlorophyll c3; Chlorophyllide a; Chlorophyllide a, derivative; DATE/TIME; DEPTH, water; Diadinoxanthin; Diatoxanthin; Fucoxanthin; JGOFS; JGOFS methods; Joint Global Ocean Flux Study; Line_P; Lutein; MULT; Multiple investigations; P12; Peridinin; Pheophorbide a2; Pheophorbide a3; Pheophorbide a4; Pheophytin a; Pheophytin b; Pyropheophorbide a; Pyropheophytin a; Sample method; Violaxanthin; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 378 data points
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  • 7
    Publication Date: 2024-02-01
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; beta-Carotene, beta,beta-Carotene; Bottle, Niskin; Chlorophyll a; Chlorophyll a allomers; Chlorophyll b; Chlorophyll c2; Chlorophyll c3; Chlorophyllide a; Chlorophyllide a, derivative; DATE/TIME; DEPTH, water; Diadinoxanthin; Diatoxanthin; Fucoxanthin; IOS_92-01; JGOFS; JGOFS methods; John P. Tully; Joint Global Ocean Flux Study; Lutein; NIS; P26; Papa; Peridinin; Pheophorbide a2; Pheophorbide a3; Pheophorbide a4; Pheophytin a; Pheophytin b; Pyropheophorbide a; Pyropheophytin a; Sample method; Violaxanthin; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 243 data points
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  • 8
    Publication Date: 2024-02-01
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; beta-Carotene, beta,beta-Carotene; Bottle, Niskin; Chlorophyll a; Chlorophyll a allomers; Chlorophyll b; Chlorophyll c2; Chlorophyll c3; Chlorophyllide a; Chlorophyllide a, derivative; DATE/TIME; DEPTH, water; Diadinoxanthin; Diatoxanthin; Fucoxanthin; IOS_92-01; JGOFS; JGOFS methods; John P. Tully; Joint Global Ocean Flux Study; Lutein; NIS; P26; Papa; Peridinin; Pheophorbide a2; Pheophorbide a3; Pheophorbide a4; Pheophytin a; Pheophytin b; Pyropheophorbide a; Pyropheophytin a; Sample method; Violaxanthin; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 378 data points
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  • 9
    Publication Date: 2024-02-01
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; beta-Carotene, beta,beta-Carotene; Bottle, Niskin; Chlorophyll a; Chlorophyll a allomers; Chlorophyll b; Chlorophyll c2; Chlorophyll c3; Chlorophyllide a; Chlorophyllide a, derivative; DATE/TIME; DEPTH, water; Diadinoxanthin; Diatoxanthin; Fucoxanthin; IOS_92-01; JGOFS; JGOFS methods; John P. Tully; Joint Global Ocean Flux Study; Lutein; NIS; P26; Papa; Peridinin; Pheophorbide a2; Pheophorbide a3; Pheophorbide a4; Pheophytin a; Pheophytin b; Pyropheophorbide a; Pyropheophytin a; Sample method; Violaxanthin; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 513 data points
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  • 10
    Publication Date: 2024-02-01
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; beta-Carotene, beta,beta-Carotene; Bottle, Niskin; Chlorophyll a; Chlorophyll a allomers; Chlorophyll b; Chlorophyll c2; Chlorophyll c3; Chlorophyllide a; Chlorophyllide a, derivative; DATE/TIME; DEPTH, water; Diadinoxanthin; Diatoxanthin; Fucoxanthin; IOS_92-01; JGOFS; JGOFS methods; John P. Tully; Joint Global Ocean Flux Study; Lutein; NIS; P26; Papa; Peridinin; Pheophorbide a2; Pheophorbide a3; Pheophorbide a4; Pheophytin a; Pheophytin b; Pyropheophorbide a; Pyropheophytin a; Sample method; Violaxanthin; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 81 data points
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