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  • 1
    Publication Date: 2005-07-01
    Print ISSN: 0743-7463
    Electronic ISSN: 1520-5827
    Topics: Chemistry and Pharmacology
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  • 2
    Publication Date: 2010-05-14
    Description: Traditional robots rely for their function on computing, to store internal representations of their goals and environment and to coordinate sensing and any actuation of components required in response. Moving robotics to the single-molecule level is possible in principle, but requires facing the limited ability of individual molecules to store complex information and programs. One strategy to overcome this problem is to use systems that can obtain complex behaviour from the interaction of simple robots with their environment. A first step in this direction was the development of DNA walkers, which have developed from being non-autonomous to being capable of directed but brief motion on one-dimensional tracks. Here we demonstrate that previously developed random walkers-so-called molecular spiders that comprise a streptavidin molecule as an inert 'body' and three deoxyribozymes as catalytic 'legs'-show elementary robotic behaviour when interacting with a precisely defined environment. Single-molecule microscopy observations confirm that such walkers achieve directional movement by sensing and modifying tracks of substrate molecules laid out on a two-dimensional DNA origami landscape. When using appropriately designed DNA origami, the molecular spiders autonomously carry out sequences of actions such as 'start', 'follow', 'turn' and 'stop'. We anticipate that this strategy will result in more complex robotic behaviour at the molecular level if additional control mechanisms are incorporated. One example might be interactions between multiple molecular robots leading to collective behaviour; another might be the ability to read and transform secondary cues on the DNA origami landscape as a means of implementing Turing-universal algorithmic behaviour.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907518/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907518/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lund, Kyle -- Manzo, Anthony J -- Dabby, Nadine -- Michelotti, Nicole -- Johnson-Buck, Alexander -- Nangreave, Jeanette -- Taylor, Steven -- Pei, Renjun -- Stojanovic, Milan N -- Walter, Nils G -- Winfree, Erik -- Yan, Hao -- P41 RR017573/RR/NCRR NIH HHS/ -- P41 RR017573-086704/RR/NCRR NIH HHS/ -- R01 GM062357/GM/NIGMS NIH HHS/ -- R01 GM062357-09/GM/NIGMS NIH HHS/ -- T32 EB005582/EB/NIBIB NIH HHS/ -- T32 EB005582-05/EB/NIBIB NIH HHS/ -- T32 GM008270/GM/NIGMS NIH HHS/ -- T32 GM008270-24/GM/NIGMS NIH HHS/ -- England -- Nature. 2010 May 13;465(7295):206-10. doi: 10.1038/nature09012.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry and Biochemistry, Arizona State University, Tempe, Arizona 85287, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20463735" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Computers, Molecular ; DNA, Catalytic/*metabolism ; DNA, Single-Stranded/chemistry/*metabolism ; Microscopy, Atomic Force ; Microscopy, Fluorescence ; *Movement/drug effects ; Nanotechnology/*methods ; Robotics ; Streptavidin/*chemistry ; Surface Plasmon Resonance ; Time Factors ; Zinc/metabolism/pharmacology
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 1990-06-29
    Description: Transcription factor IID (TFIID) binds to the TATA box promoter element and regulates the expression of most eukaryotic genes transcribed by RNA polymerase II. Complementary DNA (cDNA) encoding a human TFIID protein has been cloned. The human TFIID polypeptide has 339 amino acids and a molecular size of 37,745 daltons. The carboxyl-terminal 181 amino acids of the human TFIID protein shares 80% identity with the TFIID protein from Saccharomyces cerevisiae. The amino terminus contains an unusual repeat of 38 consecutive glutamine residues and an X-Thr-Pro repeat. Expression of DNA in reticulocyte lysates or in Escherichia coli yielded a protein that was competent for both DNA binding and transcription activation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kao, C C -- Lieberman, P M -- Schmidt, M C -- Zhou, Q -- Pei, R -- Berk, A J -- CA25235/CA/NCI NIH HHS/ -- New York, N.Y. -- Science. 1990 Jun 29;248(4963):1646-50.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Microbiology, Molecular Biology Institute, University of California, Los Angeles 90024-1570.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/2194289" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Cloning, Molecular ; Escherichia coli/genetics ; Gene Expression ; HeLa Cells/metabolism ; Humans ; Molecular Sequence Data ; *Promoter Regions, Genetic ; Recombinant Proteins/metabolism ; Reticulocytes/metabolism ; Saccharomyces cerevisiae/*genetics ; Sequence Homology, Nucleic Acid ; Transcription Factor TFIID ; Transcription Factors/*genetics/metabolism ; *Transcription, Genetic
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2012-03-10
    Description: Iridescent feather colors involved in displays of many extant birds are produced by nanoscale arrays of melanin-containing organelles (melanosomes). Data relevant to the evolution of these colors and the properties of melanosomes involved in their generation have been limited. A data set sampling variables of extant avian melanosomes reveals that those forming most iridescent arrays are distinctly narrow. Quantitative comparison of these data with melanosome imprints densely sampled from a previously unknown specimen of the Early Cretaceous feathered Microraptor predicts that its plumage was predominantly iridescent. The capacity for simple iridescent arrays is thus minimally inferred in paravian dinosaurs. This finding and estimation of Microraptor feathering consistent with an ornamental function for the tail suggest a centrality for signaling in early evolution of plumage and feather color.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Quanguo -- Gao, Ke-Qin -- Meng, Qingjin -- Clarke, Julia A -- Shawkey, Matthew D -- D'Alba, Liliana -- Pei, Rui -- Ellison, Mick -- Norell, Mark A -- Vinther, Jakob -- New York, N.Y. -- Science. 2012 Mar 9;335(6073):1215-9. doi: 10.1126/science.1213780.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Beijing Museum of Natural History, 126 Tianqiao South Street, Beijing 100050, People's Republic of China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22403389" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Biological Evolution ; Birds/*anatomy & histology ; China ; Color ; Dinosaurs/*anatomy & histology ; Discriminant Analysis ; Feathers/anatomy & histology/*ultrastructure ; Keratins/analysis/chemistry ; Melanins/analysis/chemistry ; Melanosomes/*ultrastructure ; Phylogeny ; *Pigmentation
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2020-03-01
    Electronic ISSN: 2158-3226
    Topics: Physics
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  • 6
    Publication Date: 1989-10-01
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 7
    Publication Date: 2015-01-30
    Description: Inhibition of immunoproteasome reduces infarction volume and attenuates inflammatory reaction in a rat model of ischemic stroke Cell Death and Disease 6, e1626 (January 2015). doi:10.1038/cddis.2014.586 Authors: X Chen, X Zhang, Y Wang, H Lei, H Su, J Zeng, Z Pei & R Huang
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 8
    Publication Date: 2014-04-15
    Description: Chemokine (C-C motif) ligand (CCL2) contributes to the inflammation-induced neuropathic pain through activating voltage-gated sodium channel-mediated nerve impulse conduction, but the underlying mechanism is currently unknown. Our study aimed to investigate whether Protein Kinase C (PKC)-NF-κB is involved in CCL2-induced regulation of voltage-gated sodium Nav1.8 currents and expression. Dorsal root ganglion (DRG) neurons were prepared from adult male Sprague-Dawley rats and incubated with various concentration of CCL2 for 24 hours. Whole-cell patch-clamps were performed to record the Nav1.8 currents in response to the induction by CCL2. After being pretreated with 5 nM and10 nM CCL2 for 16 h, CCR2 and Nav1.8 expression significantly increased and the peak currents of Na v 1.8 elevated from the baseline 46.53 ± 4.53 pA/pF to 64.28 ± 3.12 pA/pF following 10 nM CCL2 (P〈0.05). Compared to the control, significant change in Na v 1.8 current density was observed when the CCR2 inhibitor INCB3344 (10 nM) was applied. Furthermore, inhibition of PKC by AEB071 significantly eliminated CCL2-induced elevated Nav1.8 currents. In vitro PKC kinase assays and autoradiograms suggested that Nav1.8 within DRG neurons was a substrate of PKC and direct phosphorylation of the Na v 1.8 channel by PKC regulates its function in these neurons. Moreover, p65 expression was significantly higher in CCL2-induced neurons (P〈0.05), and was reversed by treatment with INCB3344 and AEB071. PKC-NF-κB are involved in CCL2-induced elevation of Na v 1.8 current density by promoting the phosphorylation of Na v 1.8 and its expression.
    Print ISSN: 0144-8463
    Electronic ISSN: 1573-4935
    Topics: Biology , Chemistry and Pharmacology
    Published by Portland Press
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  • 9
    Publication Date: 2018
    Description: 〈span〉〈div〉Abstract〈/div〉Sauropoda are the largest terrestrial animals to have ever lived and represent the dominant herbivorous dinosaurs of the Mesozoic Era. The Lower Shaximiao Formation of the Sichuan Basin, Southwest China, hosts abundant Jurassic basal sauropods including the 〈span〉Shunosaurus-Omeisaurus〈/span〉 Fauna. This formation was previously hypothesized to be Middle Jurassic based on biostratigraphic interpretations, but the exact depositional age is uncertain. Here we report the youngest inductively coupled plasma–mass spectrometry (ICP-MS) detrital zircon U-Pb age of 159 ± 2 Ma for fossil-bearing strata from this formation as the maximum depositional age. This age falls very close to the Oxfordian age interpreted for the 〈span〉Shunosaurus-Omeisaurus〈/span〉 Fauna and is younger than previously proposed. We suggest that when the widely distributed basal sauropods of the Early-Middle Jurassic were mostly replaced by the phylogenetically more-derived neosauropods in the Late Jurassic in other regions of Laurasia and Gondwana, some more basal members survived and diversified in the Sichuan Basin of southwestern China.〈/span〉
    Print ISSN: 0016-7606
    Electronic ISSN: 1943-2674
    Topics: Geosciences
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  • 10
    Publication Date: 2017-12-21
    Description: A junction DNA nanostructure has been successfully built in lithium acetate buffer solution at a near-neutral pH value through the connection of two slipped junction structures that are formed by G-rich and C-rich strands. The GC-rich duplex junctions in the nanostructure can be switched to G-quadruplexes and i-motifs in weakly acidic potassium acetate solution, which leads to the assembly of DNA nanostructures composed of alternating quadruplex and duplex DNA structures. The transformation between different DNA nanoarchitectures may be applied to the operation of ‘DNA nanomachines’.
    Keywords: biochemistry, chemical biology
    Electronic ISSN: 2054-5703
    Topics: Natural Sciences in General
    Published by Royal Society
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