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  • 1
    Call number: M 05.0293
    Pages: 5 Kt-Folien
    Edition: 1. Aufl. der Sonderausg. 2004
    ISBN: 3827415233
    Classification:
    Cartography, Geographical Information Systems, GIS
    Branch Library: GFZ Library
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  • 2
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    PANGAEA
    In:  Supplement to: DeCarlo, Thomas M; Cohen, Anne L; Wong, George T F; Shiah, Fuh Kwo; Lentz, S J; Davis, Kristen A; Shamberger, K E F; Lohmann, Pat (2017): Community production modulates coral reef pH and the sensitivity of ecosystem calcification to ocean acidification. Journal of Geophysical Research: Oceans, 122, 745–761, https://doi.org/10.1002/2016JC012326
    Publication Date: 2024-03-15
    Description: Coral reefs are built of calcium carbonate (CaCO3) produced biogenically by a diversity of calcifying plants, animals and microbes. As the ocean warms and acidifies, there is mounting concern that declining calcification rates could shift coral reef CaCO3 budgets from net accretion to net dissolution. We quantified net ecosystem calcification (NEC) and production (NEP) on Dongsha Atoll, northern South China Sea, over a two-week period that included a transient bleaching event. Peak daytime pH on the wide, shallow reef flat during the non-bleaching period was 8.5, significantly elevated above that of the surrounding open ocean (8.0-8.1) as a consequence of daytime NEP (up to 112 mmol C/m**2/h). Diurnal-averaged NEC was 390?+/-?90 mmol CaCO3/m**2/day, higher than any other coral reef studied to date despite comparable calcifier cover (25%) and relatively high fleshy algal cover (19%). Coral bleaching linked to elevated temperatures significantly reduced daytime NEP by 29 mmol C/m**2/h. pH on the reef flat declined by 0.2 units, causing a 40% reduction in NEC in the absence of pH changes in the surrounding open ocean. Our findings highlight the interactive relationship between carbonate chemistry of coral reef ecosystems and ecosystem production and calcification rates, which are in turn impacted by ocean warming. As open-ocean waters bathing coral reefs warm and acidify over the 21st century, the health and composition of reef benthic communities will play a major role in determining on-reef conditions that will in turn dictate the ecosystem response to climate change.
    Keywords: Alkalinity, total; Aragonite saturation state; Benthos; Bicarbonate ion; Calcification/Dissolution; Calcification rate, standard deviation; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, net production; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, air-sea, flux; Coast and continental shelf; Density; DEPTH, water; Dongsha_Atoll; Entire community; EXP; Experiment; Field observation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Irradiance; Net calcification rate of calcium carbonate; Net community production, carbon dioxide, standard deviation; North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Primary production/Photosynthesis; Rocky-shore community; Salinity; Sampling date; Temperature, water; Time, standard deviation; Time in hours; Tropical; Type
    Type: Dataset
    Format: text/tab-separated-values, 1440 data points
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  • 3
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    PANGAEA
    In:  Supplement to: Shamberger, K E F; Cohen, Anne L; Golbuu, Yimnang; McCorkle, Daniel C; Lentz, S J; Barkley, Hannah C (2014): Diverse coral communities in naturally acidified waters of a Western Pacific reef. Geophysical Research Letters, 41(2), 499-504, https://doi.org/10.1002/2013GL058489
    Publication Date: 2024-03-15
    Description: Anthropogenic carbon dioxide emissions are acidifying the oceans, reducing the concentration of carbonate ions ([CO32-) that calcifying organisms need to build and cement coral reefs. To date, studies of a handful of naturally acidified reef systems reveal depauperate communities, sometimes with reduced coral cover and calcification rates, consistent with results of laboratory-based studies. Here we report the existence of highly diverse, coral-dominated reef communities under chronically low pH and aragonite saturation state (Omega ar). Biological and hydrographic processes change the chemistry of the seawater moving across the barrier reefs and into Palau's Rock Island bays, where levels of acidification approach those projected for the western tropical Pacific open ocean by 2100. Nevertheless, coral diversity, cover, and calcification rates are maintained across this natural acidification gradient. Identifying the combination of biological and environmental factors that enable these communities to persist could provide important insights into the future of coral reefs under anthropogenic acidification.
    Keywords: Alkalinity, total; Aragonite saturation state; Aragonite saturation state, standard error; Benthos; Bicarbonate ion; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Coast and continental shelf; Community composition and diversity; Coulometric titration; Coverage; Coverage, standard error; Diversity; Diversity, standard error; Entire community; EXP; Experiment; Field observation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); North Pacific; OA-ICC; Ocean Acidification International Coordination Centre; Palauan_reef; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Potentiometric titration; Rocky-shore community; Salinity; Site; Species richness; Species richness, standard error; Temperature, water; Tropical
    Type: Dataset
    Format: text/tab-separated-values, 132 data points
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  • 4
    Publication Date: 1991-08-01
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 5
    Publication Date: 2015-12-25
    Description: Retinitis pigmentosa (RP) is a highly heterogeneous group of disorders characterized by degeneration of the retinal photoreceptor cells and progressive loss of vision. While hundreds of mutations in more than 100 genes have been reported to cause RP, discovering the causative mutations in many patients remains a significant challenge. Exome sequencing in an individual affected with non-syndromic RP revealed two plausibly disease-causing variants in TRNT1 , a gene encoding a nucleotidyltransferase critical for tRNA processing. A total of 727 additional unrelated individuals with molecularly uncharacterized RP were completely screened for TRNT1 coding sequence variants, and a second family was identified with two members who exhibited a phenotype that was remarkably similar to the index patient. Inactivating mutations in TRNT1 have been previously shown to cause a severe congenital syndrome of sideroblastic anemia, B-cell immunodeficiency, recurrent fevers and developmental delay (SIFD). Complete blood counts of all three of our patients revealed red blood cell microcytosis and anisocytosis with only mild anemia. Characterization of TRNT1 in patient-derived cell lines revealed reduced but detectable TRNT1 protein, consistent with partial function. Suppression of trnt1 expression in zebrafish recapitulated several features of the human SIFD syndrome, including anemia and sensory organ defects. When levels of trnt1 were titrated, visual dysfunction was found in the absence of other phenotypes. The visual defects in the trnt1 -knockdown zebrafish were ameliorated by the addition of exogenous human TRNT1 RNA. Our findings indicate that hypomorphic TRNT1 mutations can cause a recessive disease that is almost entirely limited to the retina.
    Print ISSN: 0964-6906
    Electronic ISSN: 1460-2083
    Topics: Biology , Medicine
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  • 6
    Publication Date: 2004-07-01
    Print ISSN: 1350-9047
    Electronic ISSN: 1476-5403
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 7
    Publication Date: 2018-07-01
    Description: A primary challenge in modeling flow over shallow coral reefs is accurately characterizing the bottom drag. Previous studies over continental shelves and sandy beaches suggest surface gravity waves should enhance the drag on the circulation over coral reefs. The influence of surface gravity waves on drag over four platform reefs in the Red Sea is examined using observations from 6-month deployments of current and pressure sensors burst sampling at 1 Hz for 4–5 min. Depth-average current fluctuations U′ within each burst are dominated by wave orbital velocities uw that account for 80%–90% of the burst variance and have a magnitude of order 10 cm s−1, similar to the lower-frequency depth-average current Uavg. Previous studies have shown that the cross-reef bottom stress balances the pressure gradient over these reefs. A bottom stress estimate that neglects the waves (ρCdaUavg|Uavg|, where ρ is water density and Cda is a drag coefficient) balances the observed pressure gradient when uw is smaller than Uavg but underestimates the pressure gradient when uw is larger than Uavg (by a factor of 3–5 when uw = 2Uavg), indicating the neglected waves enhance the bottom stress. In contrast, a bottom stress estimate that includes the waves [ρCda(Uavg + U′)|Uavg + U′|)] balances the observed pressure gradient independent of the relative size of uw and Uavg, indicating that this estimate accounts for the wave enhancement of the bottom stress. A parameterization proposed by Wright and Thompson provides a reasonable estimate of the total bottom stress (including the waves) given the burst-averaged current and the wave orbital velocity.
    Print ISSN: 0022-3670
    Electronic ISSN: 1520-0485
    Topics: Geosciences , Physics
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  • 8
    Publication Date: 2016-06-29
    Description: This paper aims to test the validity, utility, and limitations of the lateral eddy diffusivity concept in a coastal environment through analyzing data from coupled drifter and dye releases within the footprint of a high-resolution (800 m) high-frequency radar south of Martha’s Vineyard, Massachusetts. Specifically, this study investigates how well a combination of radar-based velocities and drifter-derived diffusivities can reproduce observed dye spreading over an 8-h time interval. A drifter-based estimate of an anisotropic diffusivity tensor is used to parameterize small-scale motions that are unresolved and underresolved by the radar system. This leads to a significant improvement in the ability of the radar to reproduce the observed dye spreading.
    Print ISSN: 0022-3670
    Electronic ISSN: 1520-0485
    Topics: Geosciences , Physics
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  • 9
    Publication Date: 2017-05-01
    Description: A major challenge in modeling the circulation over coral reefs is uncertainty in the drag coefficient because existing estimates span two orders of magnitude. Current and pressure measurements from five coral reefs are used to estimate drag coefficients based on depth-average flow, assuming a balance between the cross-reef pressure gradient and the bottom stress. At two sites wind stress is a significant term in the cross-reef momentum balance and is included in estimating the drag coefficient. For the five coral reef sites and a previous laboratory study, estimated drag coefficients increase as the water depth decreases consistent with open channel flow theory. For example, for a typical coral reef hydrodynamic roughness of 5 cm, observational estimates, and the theory indicate that the drag coefficient decreases from 0.4 in 20 cm of water to 0.005 in 10 m of water. Synthesis of results from the new field observations with estimates from previous field and laboratory studies indicate that coral reef drag coefficients range from 0.2 to 0.005 and hydrodynamic roughnesses generally range from 2 to 8 cm. While coral reef drag coefficients depend on factors such as physical roughness and surface waves, a substantial fraction of the scatter in estimates of coral reef drag coefficients is due to variations in water depth.
    Print ISSN: 0022-3670
    Electronic ISSN: 1520-0485
    Topics: Geosciences , Physics
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  • 10
    Publication Date: 2011-03-11
    Print ISSN: 0722-4028
    Electronic ISSN: 1432-0975
    Topics: Biology , Geosciences
    Published by Springer
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