ALBERT

Description: Genomes of animals as different as sponges and humans show conservation of global architecture. Here we show that multiple genomic features including transposon diversity, developmental gene repertoire, physical gene order, and intron-exon organization are shattered in the tunicate Oikopleura, belonging to the sister group of vertebrates and retaining chordate morphology. Ancestral architecture of animal genomes can be deeply modified and may therefore be largely nonadaptive. This rapidly evolving animal lineage thus offers unique perspectives on the level of genome plasticity. It also illuminates issues as fundamental as the mechanisms of intron gain.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3760481/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3760481/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Denoeud, France -- Henriet, Simon -- Mungpakdee, Sutada -- Aury, Jean-Marc -- Da Silva, Corinne -- Brinkmann, Henner -- Mikhaleva, Jana -- Olsen, Lisbeth Charlotte -- Jubin, Claire -- Canestro, Cristian -- Bouquet, Jean-Marie -- Danks, Gemma -- Poulain, Julie -- Campsteijn, Coen -- Adamski, Marcin -- Cross, Ismael -- Yadetie, Fekadu -- Muffato, Matthieu -- Louis, Alexandra -- Butcher, Stephen -- Tsagkogeorga, Georgia -- Konrad, Anke -- Singh, Sarabdeep -- Jensen, Marit Flo -- Huynh Cong, Evelyne -- Eikeseth-Otteraa, Helen -- Noel, Benjamin -- Anthouard, Veronique -- Porcel, Betina M -- Kachouri-Lafond, Rym -- Nishino, Atsuo -- Ugolini, Matteo -- Chourrout, Pascal -- Nishida, Hiroki -- Aasland, Rein -- Huzurbazar, Snehalata -- Westhof, Eric -- Delsuc, Frederic -- Lehrach, Hans -- Reinhardt, Richard -- Weissenbach, Jean -- Roy, Scott W -- Artiguenave, Francois -- Postlethwait, John H -- Manak, J Robert -- Thompson, Eric M -- Jaillon, Olivier -- Du Pasquier, Louis -- Boudinot, Pierre -- Liberles, David A -- Volff, Jean-Nicolas -- Philippe, Herve -- Lenhard, Boris -- Roest Crollius, Hugues -- Wincker, Patrick -- Chourrout, Daniel -- Z01 LM000073-12/Intramural NIH HHS/ -- New York, N.Y. -- Science. 2010 Dec 3;330(6009):1381-5. doi: 10.1126/science.1194167. Epub 2010 Nov 18.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Commissariat a l'Energie Atomique, Institut de Genomique, Genoscope, Evry, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21097902" target="_blank"〉PubMed〈/a〉

Description: Coffee is a valuable beverage crop due to its characteristic flavor, aroma, and the stimulating effects of caffeine. We generated a high-quality draft genome of the species Coffea canephora, which displays a conserved chromosomal gene order among asterid angiosperms. Although it shows no sign of the whole-genome triplication identified in Solanaceae species such as tomato, the genome includes several species-specific gene family expansions, among them N-methyltransferases (NMTs) involved in caffeine production, defense-related genes, and alkaloid and flavonoid enzymes involved in secondary compound synthesis. Comparative analyses of caffeine NMTs demonstrate that these genes expanded through sequential tandem duplications independently of genes from cacao and tea, suggesting that caffeine in eudicots is of polyphyletic origin.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Denoeud, France -- Carretero-Paulet, Lorenzo -- Dereeper, Alexis -- Droc, Gaetan -- Guyot, Romain -- Pietrella, Marco -- Zheng, Chunfang -- Alberti, Adriana -- Anthony, Francois -- Aprea, Giuseppe -- Aury, Jean-Marc -- Bento, Pascal -- Bernard, Maria -- Bocs, Stephanie -- Campa, Claudine -- Cenci, Alberto -- Combes, Marie-Christine -- Crouzillat, Dominique -- Da Silva, Corinne -- Daddiego, Loretta -- De Bellis, Fabien -- Dussert, Stephane -- Garsmeur, Olivier -- Gayraud, Thomas -- Guignon, Valentin -- Jahn, Katharina -- Jamilloux, Veronique -- Joet, Thierry -- Labadie, Karine -- Lan, Tianying -- Leclercq, Julie -- Lepelley, Maud -- Leroy, Thierry -- Li, Lei-Ting -- Librado, Pablo -- Lopez, Loredana -- Munoz, Adriana -- Noel, Benjamin -- Pallavicini, Alberto -- Perrotta, Gaetano -- Poncet, Valerie -- Pot, David -- Priyono -- Rigoreau, Michel -- Rouard, Mathieu -- Rozas, Julio -- Tranchant-Dubreuil, Christine -- VanBuren, Robert -- Zhang, Qiong -- Andrade, Alan C -- Argout, Xavier -- Bertrand, Benoit -- de Kochko, Alexandre -- Graziosi, Giorgio -- Henry, Robert J -- Jayarama -- Ming, Ray -- Nagai, Chifumi -- Rounsley, Steve -- Sankoff, David -- Giuliano, Giovanni -- Albert, Victor A -- Wincker, Patrick -- Lashermes, Philippe -- New York, N.Y. -- Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Commissariat a l'Energie Atomique, Genoscope, Institut de Genomique, BP5706, 91057 Evry, France. CNRS, UMR 8030, CP5706, Evry, France. Universite d'Evry, UMR 8030, CP5706, Evry, France. ; Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. ; Institut de Recherche pour le Developpement (IRD), UMR Resistance des Plantes aux Bioagresseurs (RPB) [Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. ; CIRAD, UMR Amelioration Genetique et Adaptation des Plantes Mediterraneennes et Tropicales (AGAP), F-34398 Montpellier, France. ; IRD, UMR Diversite Adaptation et Developpement des Plantes (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France. ; Italian National Agency for New Technologies, Energy and Sustainable Development (ENEA) Casaccia Research Center, Via Anguillarese 301, 00123 Roma, Italy. ; Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada. ; Commissariat a l'Energie Atomique, Genoscope, Institut de Genomique, BP5706, 91057 Evry, France. ; Institut de Recherche pour le Developpement (IRD), UMR Resistance des Plantes aux Bioagresseurs (RPB) [Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France. ; Nestle Research and Development Centre, 101 Avenue Gustave Eiffel, Notre-Dame-d'Oe, BP 49716, 37097 Tours Cedex 2, France. ; ENEA Trisaia Research Center, 75026 Rotondella, Italy. ; Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France. ; Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada. Center for Biotechnology, Universitat Bielefeld, Universitatsstrasse 27, D-33615 Bielefeld, Germany. AG Genominformatik, Technische Fakultat, Universitat Bielefeld, 33594 Bielefeld, Germany. ; Institut National de la Recherche Agronomique (INRA), Unite de Recherches en Genomique-Info (UR INRA 1164), Centre de Recherche de Versailles, 78026 Versailles Cedex, France. ; Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. Department of Biology, Chongqing University of Science and Technology, 4000042 Chongqing, China. ; Department of Plant Biology, 148 Edward R. Madigan Laboratory, MC-051, 1201 West Gregory Drive, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. ; Departament de Genetica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, Barcelona 08028, Spain. ; Department of Mathematics, University of Maryland, Mathematics Building 084, University of Maryland, College Park, MD 20742, USA. School of Electrical Engineering and Computer Science, University of Ottawa, 800 King Edward Avenue, Ottawa, Ontario K1N 6N5, Canada. ; Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy. ; Indonesian Coffee and Cocoa Institute, Jember, East Java, Indonesia. ; Laboratorio de Genetica Molecular, Nucleo de Biotecnologia (NTBio), Embrapa Recursos Geneticos e Biotecnologia, Final Av. W/5 Norte, Parque Estacao Biologia, Brasilia-DF 70770-917, Brazil. ; CIRAD, UMR RPB (CIRAD, IRD, UM2), BP 64501, 34394 Montpellier Cedex 5, France. ; Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy. DNA Analytica Srl, Via Licio Giorgieri 5, 34127 Trieste, Italy. ; Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia 4072, Australia. ; Central Coffee Research Institute, Coffee Board, Coffee Research Station (Post) - 577 117 Chikmagalur District, Karnataka State, India. ; Hawaii Agriculture Research Center, Post Office Box 100, Kunia, HI 96759-0100, USA. ; BIO5 Institute, University of Arizona, 1657 Helen Street, Tucson, AZ 85721, USA. ; Department of Biological Sciences, 109 Cooke Hall, University at Buffalo (State University of New York), Buffalo, NY 14260, USA. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr. ; Commissariat a l'Energie Atomique, Genoscope, Institut de Genomique, BP5706, 91057 Evry, France. CNRS, UMR 8030, CP5706, Evry, France. Universite d'Evry, UMR 8030, CP5706, Evry, France. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr. ; Institut de Recherche pour le Developpement (IRD), UMR Resistance des Plantes aux Bioagresseurs (RPB) [Centre de Cooperation Internationale en Recherche Agronomique pour le Developpement (CIRAD), IRD, UM2)], BP 64501, 34394 Montpellier Cedex 5, France. vaalbert@buffalo.edu pwincker@genoscope.cns.fr philippe.lashermes@ird.fr.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25190796" target="_blank"〉PubMed〈/a〉

Description: Bananas (Musa spp.), including dessert and cooking types, are giant perennial monocotyledonous herbs of the order Zingiberales, a sister group to the well-studied Poales, which include cereals. Bananas are vital for food security in many tropical and subtropical countries and the most popular fruit in industrialized countries. The Musa domestication process started some 7,000 years ago in Southeast Asia. It involved hybridizations between diverse species and subspecies, fostered by human migrations, and selection of diploid and triploid seedless, parthenocarpic hybrids thereafter widely dispersed by vegetative propagation. Half of the current production relies on somaclones derived from a single triploid genotype (Cavendish). Pests and diseases have gradually become adapted, representing an imminent danger for global banana production. Here we describe the draft sequence of the 523-megabase genome of a Musa acuminata doubled-haploid genotype, providing a crucial stepping-stone for genetic improvement of banana. We detected three rounds of whole-genome duplications in the Musa lineage, independently of those previously described in the Poales lineage and the one we detected in the Arecales lineage. This first monocotyledon high-continuity whole-genome sequence reported outside Poales represents an essential bridge for comparative genome analysis in plants. As such, it clarifies commelinid-monocotyledon phylogenetic relationships, reveals Poaceae-specific features and has led to the discovery of conserved non-coding sequences predating monocotyledon-eudicotyledon divergence.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉D'Hont, Angelique -- Denoeud, France -- Aury, Jean-Marc -- Baurens, Franc-Christophe -- Carreel, Francoise -- Garsmeur, Olivier -- Noel, Benjamin -- Bocs, Stephanie -- Droc, Gaetan -- Rouard, Mathieu -- Da Silva, Corinne -- Jabbari, Kamel -- Cardi, Celine -- Poulain, Julie -- Souquet, Marlene -- Labadie, Karine -- Jourda, Cyril -- Lengelle, Juliette -- Rodier-Goud, Marguerite -- Alberti, Adriana -- Bernard, Maria -- Correa, Margot -- Ayyampalayam, Saravanaraj -- Mckain, Michael R -- Leebens-Mack, Jim -- Burgess, Diane -- Freeling, Mike -- Mbeguie-A-Mbeguie, Didier -- Chabannes, Matthieu -- Wicker, Thomas -- Panaud, Olivier -- Barbosa, Jose -- Hribova, Eva -- Heslop-Harrison, Pat -- Habas, Remy -- Rivallan, Ronan -- Francois, Philippe -- Poiron, Claire -- Kilian, Andrzej -- Burthia, Dheema -- Jenny, Christophe -- Bakry, Frederic -- Brown, Spencer -- Guignon, Valentin -- Kema, Gert -- Dita, Miguel -- Waalwijk, Cees -- Joseph, Steeve -- Dievart, Anne -- Jaillon, Olivier -- Leclercq, Julie -- Argout, Xavier -- Lyons, Eric -- Almeida, Ana -- Jeridi, Mouna -- Dolezel, Jaroslav -- Roux, Nicolas -- Risterucci, Ange-Marie -- Weissenbach, Jean -- Ruiz, Manuel -- Glaszmann, Jean-Christophe -- Quetier, Francis -- Yahiaoui, Nabila -- Wincker, Patrick -- England -- Nature. 2012 Aug 9;488(7410):213-7. doi: 10.1038/nature11241.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Centre de cooperation Internationale en Recherche Agronomique pour le Developpement, UMR AGAP, F-34398 Montpellier, France. angelique.d'hont@cirad.fr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22801500" target="_blank"〉PubMed〈/a〉

Description: The Perigord black truffle (Tuber melanosporum Vittad.) and the Piedmont white truffle dominate today's truffle market. The hypogeous fruiting body of T. melanosporum is a gastronomic delicacy produced by an ectomycorrhizal symbiont endemic to calcareous soils in southern Europe. The worldwide demand for this truffle has fuelled intense efforts at cultivation. Identification of processes that condition and trigger fruit body and symbiosis formation, ultimately leading to efficient crop production, will be facilitated by a thorough analysis of truffle genomic traits. In the ectomycorrhizal Laccaria bicolor, the expansion of gene families may have acted as a 'symbiosis toolbox'. This feature may however reflect evolution of this particular taxon and not a general trait shared by all ectomycorrhizal species. To get a better understanding of the biology and evolution of the ectomycorrhizal symbiosis, we report here the sequence of the haploid genome of T. melanosporum, which at approximately 125 megabases is the largest and most complex fungal genome sequenced so far. This expansion results from a proliferation of transposable elements accounting for approximately 58% of the genome. In contrast, this genome only contains approximately 7,500 protein-coding genes with very rare multigene families. It lacks large sets of carbohydrate cleaving enzymes, but a few of them involved in degradation of plant cell walls are induced in symbiotic tissues. The latter feature and the upregulation of genes encoding for lipases and multicopper oxidases suggest that T. melanosporum degrades its host cell walls during colonization. Symbiosis induces an increased expression of carbohydrate and amino acid transporters in both L. bicolor and T. melanosporum, but the comparison of genomic traits in the two ectomycorrhizal fungi showed that genetic predispositions for symbiosis-'the symbiosis toolbox'-evolved along different ways in ascomycetes and basidiomycetes.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Martin, Francis -- Kohler, Annegret -- Murat, Claude -- Balestrini, Raffaella -- Coutinho, Pedro M -- Jaillon, Olivier -- Montanini, Barbara -- Morin, Emmanuelle -- Noel, Benjamin -- Percudani, Riccardo -- Porcel, Bettina -- Rubini, Andrea -- Amicucci, Antonella -- Amselem, Joelle -- Anthouard, Veronique -- Arcioni, Sergio -- Artiguenave, Francois -- Aury, Jean-Marc -- Ballario, Paola -- Bolchi, Angelo -- Brenna, Andrea -- Brun, Annick -- Buee, Marc -- Cantarel, Brandi -- Chevalier, Gerard -- Couloux, Arnaud -- Da Silva, Corinne -- Denoeud, France -- Duplessis, Sebastien -- Ghignone, Stefano -- Hilselberger, Benoit -- Iotti, Mirco -- Marcais, Benoit -- Mello, Antonietta -- Miranda, Michele -- Pacioni, Giovanni -- Quesneville, Hadi -- Riccioni, Claudia -- Ruotolo, Roberta -- Splivallo, Richard -- Stocchi, Vilberto -- Tisserant, Emilie -- Viscomi, Arturo Roberto -- Zambonelli, Alessandra -- Zampieri, Elisa -- Henrissat, Bernard -- Lebrun, Marc-Henri -- Paolocci, Francesco -- Bonfante, Paola -- Ottonello, Simone -- Wincker, Patrick -- England -- Nature. 2010 Apr 15;464(7291):1033-8. doi: 10.1038/nature08867. Epub 2010 Mar 28.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉INRA, UMR 1136, INRA-Nancy Universite, Interactions Arbres/Microorganismes, 54280 Champenoux, France. fmartin@nancy.inra.fr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20348908" target="_blank"〉PubMed〈/a〉

Description: Oilseed rape (Brassica napus L.) was formed ~7500 years ago by hybridization between B. rapa and B. oleracea, followed by chromosome doubling, a process known as allopolyploidy. Together with more ancient polyploidizations, this conferred an aggregate 72x genome multiplication since the origin of angiosperms and high gene content. We examined the B. napus genome and the consequences of its recent duplication. The constituent An and Cn subgenomes are engaged in subtle structural, functional, and epigenetic cross-talk, with abundant homeologous exchanges. Incipient gene loss and expression divergence have begun. Selection in B. napus oilseed types has accelerated the loss of glucosinolate genes, while preserving expansion of oil biosynthesis genes. These processes provide insights into allopolyploid evolution and its relationship with crop domestication and improvement.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chalhoub, Boulos -- Denoeud, France -- Liu, Shengyi -- Parkin, Isobel A P -- Tang, Haibao -- Wang, Xiyin -- Chiquet, Julien -- Belcram, Harry -- Tong, Chaobo -- Samans, Birgit -- Correa, Margot -- Da Silva, Corinne -- Just, Jeremy -- Falentin, Cyril -- Koh, Chu Shin -- Le Clainche, Isabelle -- Bernard, Maria -- Bento, Pascal -- Noel, Benjamin -- Labadie, Karine -- Alberti, Adriana -- Charles, Mathieu -- Arnaud, Dominique -- Guo, Hui -- Daviaud, Christian -- Alamery, Salman -- Jabbari, Kamel -- Zhao, Meixia -- Edger, Patrick P -- Chelaifa, Houda -- Tack, David -- Lassalle, Gilles -- Mestiri, Imen -- Schnel, Nicolas -- Le Paslier, Marie-Christine -- Fan, Guangyi -- Renault, Victor -- Bayer, Philippe E -- Golicz, Agnieszka A -- Manoli, Sahana -- Lee, Tae-Ho -- Thi, Vinh Ha Dinh -- Chalabi, Smahane -- Hu, Qiong -- Fan, Chuchuan -- Tollenaere, Reece -- Lu, Yunhai -- Battail, Christophe -- Shen, Jinxiong -- Sidebottom, Christine H D -- Wang, Xinfa -- Canaguier, Aurelie -- Chauveau, Aurelie -- Berard, Aurelie -- Deniot, Gwenaelle -- Guan, Mei -- Liu, Zhongsong -- Sun, Fengming -- Lim, Yong Pyo -- Lyons, Eric -- Town, Christopher D -- Bancroft, Ian -- Wang, Xiaowu -- Meng, Jinling -- Ma, Jianxin -- Pires, J Chris -- King, Graham J -- Brunel, Dominique -- Delourme, Regine -- Renard, Michel -- Aury, Jean-Marc -- Adams, Keith L -- Batley, Jacqueline -- Snowdon, Rod J -- Tost, Jorg -- Edwards, David -- Zhou, Yongming -- Hua, Wei -- Sharpe, Andrew G -- Paterson, Andrew H -- Guan, Chunyun -- Wincker, Patrick -- BB/E017363/1/Biotechnology and Biological Sciences Research Council/United Kingdom -- New York, N.Y. -- Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut National de Recherche Agronomique (INRA)/Universite d'Evry Val d'Essone, Unite de Recherche en Genomique Vegetale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Cremieux, 91057 Evry, France. chalhoub@evry.inra.fr. ; Commissariat a l'Energie Atomique (CEA), Institut de Genomique (IG), Genoscope, BP5706, 91057 Evry, France. Universite d'Evry Val d'Essone, UMR 8030, CP5706, Evry, France. Centre National de Recherche Scientifique (CNRS), UMR 8030, CP5706, Evry, France. ; Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture of People's Republic of China, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China. ; Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2, Canada. chalhoub@evry.inra.fr. ; J. Craig Venter Institute, Rockville, MD 20850, USA. Center for Genomics and Biotechnology, Fujian Agriculture and Forestry, University, Fuzhou 350002, Fujian Province, China. ; Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA. Center of Genomics and Computational Biology, School of Life Sciences, Hebei United University, Tangshan, Hebei 063000, China. ; Laboratoire de Mathematiques et Modelisation d'Evry-UMR 8071 CNRS/Universite d'Evry val d'Essonne-USC INRA, Evry, France. ; Institut National de Recherche Agronomique (INRA)/Universite d'Evry Val d'Essone, Unite de Recherche en Genomique Vegetale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Cremieux, 91057 Evry, France. ; Department of Plant Breeding, Research Center for Biosystems, Land Use and Nutrition, Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392 Giessen, Germany. ; Commissariat a l'Energie Atomique (CEA), Institut de Genomique (IG), Genoscope, BP5706, 91057 Evry, France. ; INRA, Institut de Genetique, Environnement et Protection des Plantes (IGEPP) UMR1349, BP35327, 35653 Le Rheu Cedex, France. ; National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada. ; INRA, Etude du Polymorphisme des Genomes Vegetaux, US1279, Centre National de Genotypage, CEA-IG, 2 rue Gaston Cremieux, 91057 Evry, France. ; Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA. ; Laboratory for Epigenetics and Environment, Centre National de Genotypage, CEA-IG, 2 rue Gaston Cremieux, 91000 Evry, France. ; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia. ; Institut National de Recherche Agronomique (INRA)/Universite d'Evry Val d'Essone, Unite de Recherche en Genomique Vegetale, UMR1165, Organization and Evolution of Plant Genomes, 2 rue Gaston Cremieux, 91057 Evry, France. Cologne Center for Genomics, University of Cologne, Weyertal 115b, 50931 Koln, Germany. ; Department of Agronomy, Purdue University, WSLR Building B018, West Lafayette, IN 47907, USA. ; Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA. ; Department of Botany, University of British Columbia, Vancouver, BC, Canada. ; Beijing Genome Institute-Shenzhen, Shenzhen 518083, China. ; Fondation Jean Dausset-Centre d'Etude du Polymorphisme Humain, 27 rue Juliette Dodu, 75010 Paris, France. ; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China. ; College of Agronomy, Hunan Agricultural University, Changsha 410128, China. ; Molecular Genetics and Genomics Laboratory, Department of Horticulture, Chungnam National University, Daejeon-305764, South Korea. ; School of Plant Sciences, iPlant Collaborative, University of Arizona, Tucson, AZ, USA. ; J. Craig Venter Institute, Rockville, MD 20850, USA. ; Department of Biology, University of York, Wentworth Way, Heslington, York YO10 5DD, UK. ; Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China. ; Division of Biological Sciences, University of Missouri, Columbia, MO 65211, USA. ; Southern Cross Plant Science, Southern Cross University, Lismore, NSW 2480, Australia. ; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia. School of Plant Biology, University of Western Australia, WA 6009, Australia. ; Australian Centre for Plant Functional Genomics, School of Agriculture and Food Sciences, University of Queensland, St. Lucia, QLD 4072, Australia. School of Plant Biology, University of Western Australia, WA 6009, Australia. chalhoub@evry.inra.fr. ; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China. chalhoub@evry.inra.fr. ; Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture of People's Republic of China, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China. chalhoub@evry.inra.fr. ; National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada. chalhoub@evry.inra.fr. ; Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA. chalhoub@evry.inra.fr. ; College of Agronomy, Hunan Agricultural University, Changsha 410128, China. chalhoub@evry.inra.fr. ; Commissariat a l'Energie Atomique (CEA), Institut de Genomique (IG), Genoscope, BP5706, 91057 Evry, France. Universite d'Evry Val d'Essone, UMR 8030, CP5706, Evry, France. Centre National de Recherche Scientifique (CNRS), UMR 8030, CP5706, Evry, France. chalhoub@evry.inra.fr.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25146293" target="_blank"〉PubMed〈/a〉

Description: Red seaweeds are key components of coastal ecosystems and are economically important as food and as a source of gelling agents, but their genes and genomes have received little attention. Here we report the sequencing of the 105-Mbp genome of the florideophyte Chondrus crispus (Irish moss) and the annotation of...