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  • 1
    Online Resource
    Online Resource
    Cham :Springer International Publishing :
    Keywords: Botany. ; Genetics. ; Biotechnology. ; Agriculture. ; Plant Science. ; Genetics and Genomics. ; Biotechnology. ; Agriculture.
    Description / Table of Contents: Chapter 1. The Broomcorn Millet Genome -- Chapter 2. Buckwheat Genome and Genomics -- Chapter 3. Tef [Eragrostistis tef (Zucc.) Trotter] -- Chapter 4. The Apricot Genome -- Chapter 5. Chinese Jujube: Crop Background and Genome Sequencing -- Chapter 6. The Longan (Dimocarpus longan) Genome -- Chapter 7. The Mangosteen Genome -- Chapter 8. The Passion Fruit Genome -- Chapter 9. The Soursop Genome (Annona muricata L., Annonaceae) -- Chapter 10. Underutilised Fruit Tree Genomes from Indonesia -- Chapter 11. The Bambara Groundnut Genome: From the Crop to the Genome -- Chapter 12. Grasspea -- Chapter 13. The Lablab Genome -- Chapter 14. The Perennial Horse Gram (Macrotyloma axillare) Genome, Phylogeny, and Selection Across the Fabaceae -- Chapter 15. Breeding and Genomics of Pigeonpea in the Post-NGS Era -- Chapter 16. Rice Bean -- Chapter 17. The Winged Bean Genome: One Species Supermarket -- Chapter 18. Castor Bean: Recent Progress in Understanding the Genome of this Underutilized Crop -- Chapter 19. Genome Resources for Ensete Ventricosum (enset) and Related Species -- Chapter 20. Yam Genomics -- Chapter 21. The African Eggplant -- Chapter 22. Sequencing of the Bottle Gourd Genomes Enhances Understanding of the Ancient Orphan Crop -- Chapter 23. Advances and Prospects in Genomic and Functional Studies of the Aquatic Crop, Sacred Lotus -- Chapter 24. Utilising Public Resources for Fundamental Work in Underutilised and Orphan Crops.
    Abstract: This book highlights the uses for underutilized crops, presenting the state-of-the-art in terms of genome sequencing for over 30 crops, previously understudied and under-researched. In a changing climate and with significant pressure on the land, it is the ideal time to be discussing novel crops, with significant biotic and abiotic tolerances and/or rich nutrient profiles for consumers. Previously, the only species with sequenced genomes were high-profile internationally recognized crops, but in the current era genomes are being sequenced for dozens of crops, including those previously classified as underutilized, now being investigated. This book covers food crops, from fruits to tubers, and from grasses to legumes, as well as crops with non-food applications. Some of these crops have draft genomes, and others have polished genomes with extensive resequencing panels. Each chapter tells the story of an individual crop or crop group, written by experts, focusing on the genome data available, revealing more about crop domestication and genetic variation, and the current and future prospects given that this data is now becoming available. It also highlights how even small sequencing projects can provide draft genome sequences suitable for gene discovery, comparative genomics, and identification of molecular markers for understanding these crops further.
    Type of Medium: Online Resource
    Pages: XXIV, 450 p. 125 illus., 105 illus. in color. , online resource.
    Edition: 1st ed. 2022.
    ISBN: 9783031008481
    Series Statement: Compendium of Plant Genomes,
    DDC: 580
    Language: English
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  • 2
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    PANGAEA
    In:  Supplement to: Chapman, Mark R (2010): Seasonal production patterns of planktonic foraminifera in the NE Atlantic Ocean: Implications for paleotemperature and hydrographic reconstructions. Paleoceanography, 25(1), PA1101, https://doi.org/10.1029/2008PA001708
    Publication Date: 2023-05-12
    Description: Sediment trap samples from OMEX 2 (49°N, 13°W) provide a continuous record of the seasonal succession of planktonic foraminifera in the midlatitude North Atlantic and reveal a complex relationship between periods of production and specific hydrographic conditions. Neogloboquadrina pachyderma dextral coiling (d.), Globigerina bulloides, and Globorotalia inflata are found in great numbers during both the spring and summer seasons, whereas Globigerina quinqueloba, Globorotalia hirsuta, Globorotalia scitula, and Globigerinita glutinata are associated predominantly with the increase in productivity during the spring bloom. Globigerinella aequilateralis, Orbulina universa, and Globigerinoides sacculifer are restricted to late summer conditions following the establishment of a warm, well-stratified surface ocean. An annually integrated fauna from the sediment trap, comprising ~13,000 individuals, is used to evaluate the accuracy of five faunal-based statistical methods of paleotemperature estimation. All of the temperature reconstruction techniques produce estimates of ~16°C and ~11°C for summer and winter surface temperature, respectively, which are in excellent agreement with regional hydrographic data and suggest that the sediment trap assemblage is well represented in the core top faunas. Analysis of the key species that dominate the OMEX 2 sediment trap fauna, G. bulloides, G. inflata, and N. pachyderma d., based on d18O derived temperatures from North Atlantic core top samples, suggests that seasonal variations in planktonic foraminiferal production are nonuniform across the midlatitudes and that this is likely to complicate reconstructing past seasonal hydrographic dynamics using these taxa.
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 3
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    PANGAEA
    In:  Supplement to: Chapman, Mark R; Shackleton, Nicholas J; Zhao, Meixun; Eglinton, Geoffrey (1996): Faunal and alkenone reconstructions of subtropical North Atlantic surface hydrography and paleotemperature over the last 28 kyr. Paleoceanography, 11(3), 343-358, https://doi.org/10.1029/96PA00041
    Publication Date: 2023-05-12
    Description: Two techniques for estimating past variations in sea surface temperature (SST) have been used to investigate climatic change in Biogeochemical Oceanic Flux Study (BOFS) core 31K (19°N, 20°W) from the eastern subtropical Atlantic. High-resolution SST records for the last 28 kyr have been produced using planktonic foraminiferal assemblages, based on the Imbrie-Kipp transfer function technique, and the UK' 37 index derived from abundances of C37 alkenones biosynthesized by prymnesiophyte algae. Modern observations suggest that these indices reflect particular hydrographic conditions in the upper ocean: the UK? 37 index corresponds to the temperature at the time of maximum coccolith productivity, typically late spring-early summer in the study area today, whereas the faunal transfer function is calibrated for seasonal maximum and minimum temperatures. In general, the faunal and biomarker paleotemperature records display comparable SST variations during the last glacial and deglacial, but although the overall trends are similar, differences exist in the magnitude and timing of these temperature changes. Most notably, the faunal T warm and UK' 37 SST estimates diverge by 3°C between 8 ka and 6 ka, and this offset persists through the late Holocene. This difference cannot be adequately explained by uncertainties associated with either the calibration data sets or fluctuating preservation levels. We therefore propose that the deviation in SST estimates is linked to a switch in the seasonal timing of maximum coccolith production from the summer in the glacial ocean to the late spring-early summer in the modern ocean. Our results suggest that a dual approach to SST estimation based on faunal and biomarker proxies can provide a valuable means of evaluating mixed layer and productivity changes associated with the movement of oceanographic frontal zones during the late Quaternary.
    Keywords: AGE; Biogeochemical Ocean Flux Study; BOFS; BOFS31/1K; BOFS31#1; Calculated from UK'37 (Prahl et al., 1988); CD53; Charles Darwin; DEPTH, sediment/rock; GLAMAP; Globigerina bulloides, δ18O; KAL; Kasten corer; Mass spectrometer VG Isogas Prism; Northeast Atlantic; Sea surface temperature, annual mean; Sea surface temperature, summer; Sea surface temperature, winter; Transfer function (Imbrie & Kipp, 1971, in Turekian, Yale Univ Press)
    Type: Dataset
    Format: text/tab-separated-values, 210 data points
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  • 4
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    PANGAEA
    Publication Date: 2023-05-12
    Keywords: Atlantic Ocean; Counting 〉150 µm fraction; DATE/TIME; DEPTH, water; Foraminifera, planktic; Foraminifera, planktic, other; Globigerina bulloides; Globigerina digitata; Globigerina falconensis; Globigerina quinqueloba; Globigerinella aequilateralis; Globigerinita glutinata; Globigerinoides ruber white; Globigerinoides sacculifer; Globorotalia hirsuta; Globorotalia inflata; Globorotalia scitula; Globorotalia truncatulinoides sinistral; Neogloboquadrina pachyderma dextral; Neogloboquadrina pachyderma sinistral; OMEX2; OMEX2_trap; Orbulina universa; Sample ID; Split; Trap, sediment; TRAPS
    Type: Dataset
    Format: text/tab-separated-values, 665 data points
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  • 5
    Publication Date: 2023-05-12
    Keywords: BC; Box corer; Charles Darwin; DEPTH, sediment/rock; Event label; Globigerina bulloides, δ18O; Isotope ratio mass spectrometry; Latitude of event; Longitude of event; NEAP; NEAP-01B; NEAP-02B; NEAP-03B; NEAP-04B; NEAP-05B; NEAP-06B; NEAP-07B; NEAP-08B; NEAP-09B; NEAP-10B; NEAP-11B; NEAP-12B; NEAP-13B; NEAP-14B; NEAP-15B; NEAP-16B; NEAP-17B; NEAP-18B; NEAP-19B; NEAP-20B
    Type: Dataset
    Format: text/tab-separated-values, 40 data points
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  • 6
    Publication Date: 2023-05-12
    Keywords: Depth, reference; DEPTH, sediment/rock; Knorr; KNR140; KNR140-37JPC; PC; Piston corer; Sea surface temperature, summer; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 112 data points
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  • 7
    Publication Date: 2023-05-12
    Keywords: Depth, reference; DEPTH, sediment/rock; GC; Globigerina bulloides, δ18O; Gravity corer; NA87-25
    Type: Dataset
    Format: text/tab-separated-values, 104 data points
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  • 8
    Publication Date: 2023-05-12
    Keywords: DEPTH, sediment/rock; EW9302; EW9302-JPC8; JPC; Jumbo Piston Core; Maurice Ewing; Sea surface temperature, summer; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 42 data points
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  • 9
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    PANGAEA
    In:  Supplement to: de Abreu, Lucia; Shackleton, Nicholas J; Schönfeld, Joachim; Hall, Michael A; Chapman, Mark R (2003): Millenial-scale oceanic climate variability off the Western Iberian margin during the last two glacial periods. Marine Geology, 196(1-2), 1-20, https://doi.org/10.1016/S0025-3227(03)00046-X
    Publication Date: 2023-06-27
    Description: High-resolution palaeoclimate records recovered from the Iberian margin in core MD95-2040 exhibit large fluctuations in oceanographic conditions over the last 190 ka. Large-scale cooling of the surface ocean is indicated by the presence of the polar planktonic foraminifer Neogloboquadrina pachyderma (sinistral), and in some instances the occurrence of ice-rafted debris (IRD). Ice-rafting episodes were prevalent in both of the last two glacials with greater intensity in Stages 2 through 4, than in Stage 6. The six youngest Heinrich events are well defined during the last glacial but detrital carbonate is absent from Heinrich layers HL6, HL5 and HL3. Dansgaard-Oeschger stadial-equivalent sub-millennial IRD deposition events have been detected, in particular during Stage 3, allowing a good match with the cooling displayed in the Greenland ice core (GISP2). Sea-surface temperature off Portugal in Stage 6 was in general warmer than during the last glacial, pointing towards a weaker southward influence of polar water masses. Ice rafting occurred mainly in mid-MIS (Marine Isotope Stage) 6 (between 173 and 153 kyr) as a group of poorly differentiated, short-duration quasi-continuous events, mainly marked by the high abundance of sinistral N. pachyderma. Differences exist in IRD composition relative to the last glacial, with a reduced Canadian-derived detrital carbonate component, combined with an important contribution of volcanic particles. The lower magnitude and higher frequency of these events suggest that the higher temperatures would have induced iceberg waning closer to the source areas.
    Keywords: CALYPSO; Calypso Corer; IMAGES; IMAGES I; International Marine Global Change Study; Marion Dufresne (1995); MD101; MD952040; MD95-2040; Porto Seamount
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 10
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    PANGAEA
    In:  Supplement to: Hoogakker, Babette A A; Chapman, Mark R; McCave, I Nick; Hillaire-Marcel, Claude; Ellison, Christopher RW; Hall, Ian R; Telford, Richard J (2011): Dynamics of North Atlantic Deep Water masses during the Holocene. Paleoceanography, 26(4), PA4214, https://doi.org/10.1029/2011PA002155
    Publication Date: 2023-06-27
    Description: High resolution flow speed reconstructions of two core sites located on Gardar Drift in the northeast Atlantic Basin and Orphan Knoll in the northwest Atlantic Basin reveal a long-term decrease in flow speed of Northeast Atlantic Deep Water (NEADW) after 6,500 years. Benthic foraminiferal oxygen isotopes of sites currently bathed in NEADW show a 0.2per mil depletion after 6,500 years, shortly after the start of the development of a carbon isotope gradient between NEADW and Norwegian Sea Deep Water. We consider these changes in near-bottom flow vigor and benthic foraminiferal isotope records to mark a significant reorganization of the Holocene deep ocean circulation, and attribute the changes to a weakening of NEADW flow during the mid to late Holocene that allowed the shoaling of Lower Deep Water and deeper eastward advection of Labrador Sea Water into the northeast Atlantic Basin.
    Keywords: Age, 14C AMS; Age, calibrated; Age, dated; Age, dated material; Age, dated standard deviation; Age, maximum/old; Age, minimum/young; BC; Box corer; Calendar age; CALYPSO; Calypso Corer; DEPTH, sediment/rock; Event label; HU91-045-093; IMAGES I; IMAGES V; Laboratory code/label; Labrador Sea; Marion Dufresne (1995); MD101; MD114; MD952024; MD95-2024; MD99-2251; Orphan Knoll; Rockall
    Type: Dataset
    Format: text/tab-separated-values, 380 data points
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