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  • 1
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    Microbial community composition of sediments influenced by intensive mariculture activity (2019)
    Oxford University Press
    Details
    Publication Date: 2019-01-14
    Print ISSN: 0168-6496
    Electronic ISSN: 1574-6941
    Topics: Biology
    Published by Oxford University Press on behalf of Federation of European Microbiological Societies.
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    PAPER CURRENT
  • 2
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    Geochemical parameters measured in sediments and sediment pore water from a fish farming area in Bolinao, Philippines, 2017-06-10 and 2017-06-11 (2019)
    PANGAEA
    Details
    Publication Date: 2023-03-27
    Description: Physicochemical parameters and relative abundance of selected nutrient cycling genes were measured in sediment and pore water samples taken from a fish farming area (Site S3 16◦23.097 N, 119◦55.551 E, depth 12.6m) and a control site (Site S1 16◦22.960 N, 119◦54.723 E, depth 15m) not influenced by fish farming. From each site, five pairs of cores representing five biological replicates were collected. One core from each pair was used for physicochemical analysis while the other cores were used for microbial community analysis. Samples from S1 were collected on 2017-06-10 and samples from S3 were collected the following day. This dataset presents % Carbon (%C), % Nitrogen (%N), % total organic carbon (%Corg), and stable isotope (d13C and d15N) content. The following were measured in the pore water: dissolved organic carbon (DOC), total dissolved nitrogen (TDN), ammonium, phosphate, and silicate.
    Keywords: ACUTE; Ammonium; Aquaculture practice in tropical coastal ecosystems - understanding ecological and socio-economic consequences; Carbon, organic, dissolved; Carbon, organic, total; Carbon, total; Carbon/Nitrogen ratio; Core; DHC; Diver-held corer; Elemental analyzer, EuroVector, EA 3000; Event label; FC; fish cage; Guiguiwanen_channel_S1; Guiguiwanen_channel_S3; marine aquaculture; Nitrogen, total; Nitrogen, total dissolved; nutrient loading; OC; off cage site; Philippines; Phosphate; Plate reader,TECAN, Infinite F200 PRO; Shimadzu TOC-VCPH total organic carbon analyzer; Silicate; Site; Skalar continuous flow analyzer; δ13C, organic carbon; δ15N
    Type: Dataset
    Format: text/tab-separated-values, 130 data points
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    DATA PANGAEA
  • 3
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    Nitrogen and sulfur-cycling genes in sediments from a fish farming area in Bolinao, Philippines, 2017-06-10 and 2017-06-11 (2019)
    PANGAEA
    Details
    Publication Date: 2023-02-23
    Description: Physicochemical parameters and relative abundance of selected nutrient cycling genes were measured in sediment and pore water samples taken from a fish farming area (Site S3 16◦23.097 N, 119◦55.551 E, depth 12.6m) and a control site (Site S1 16◦22.960 N, 119◦54.723 E, depth 15m) not influenced by fish farming. From each site, five pairs of cores representing five biological replicates were collected. One core from each pair was used for physicochemical analysis while the other cores were used for microbial community analysis. Samples from S1 were collected on 2017-06-10 and samples from S3 were collected the following day. Nitrogen (bacterial ammonia monooxygenase/ amoA and nitrite reductase/ nirK) and sulfur (dissimilatory sulfate reductase/ dsrA and sulfur oxidation/ soxB) cycling genes were quantified and normalized against the abundance of the 16S rRNA gene.
    Keywords: ACUTE; Ammonia monooxygenase, amoA gene, relative abundance; Aquaculture practice in tropical coastal ecosystems - understanding ecological and socio-economic consequences; Core; DHC; Dissimilatory sulfate reductase, dsrA gene, relative abundance; Diver-held corer; Event label; Extraction: Mobio DNA Isolation Kit (Mo Bio Laboratories, Carlsbad, USA); Analysis: Shimadzu Biospec Nano microvolume spectrophotometer; FC; fish cage; Guiguiwanen_channel_S1; Guiguiwanen_channel_S3; marine aquaculture; Nitrite reductase, nirK gene, relative abundance; nutrient loading; OC; off cage site; Philippines; Site; Sulfur oxidizing multi-enzyme, gene soxB, relative abundance
    Type: Dataset
    Format: text/tab-separated-values, 140 data points
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    DATA PANGAEA
  • 4
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    Grain size distribution from a fish farming area in Bolinao, Philippines, 2017-06-10 and 2017-06-11 (2019)
    PANGAEA
    Details
    Publication Date: 2023-07-11
    Description: Physicochemical parameters and relative abundance of selected nutrient cycling genes were measured in sediment and pore water samples taken from a fish farming area (Site S3 16◦23.097 N, 119◦55.551 E, depth 12.6m) and a control site (Site S1 16◦22.960 N, 119◦54.723 E, depth 15m) not influenced by fish farming. From each site, five pairs of cores representing five biological replicates were collected. One core from each pair was used for physicochemical analysis while the other cores were used for microbial community analysis. Samples from S1 were collected on 2017-06-10 and samples from S3 were collected the following day. This dataset presents grain size distribution.
    Keywords: ACUTE; Aquaculture practice in tropical coastal ecosystems - understanding ecological and socio-economic consequences; Core; DHC; Diver-held corer; Event label; FC; fish cage; Guiguiwanen_channel_S1; Guiguiwanen_channel_S3; Laser scattering particle size distribution analyser Horiba LA-950V2; marine aquaculture; nutrient loading; OC; off cage site; Philippines; Site; Size fraction
    Type: Dataset
    Format: text/tab-separated-values, 950 data points
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    DATA PANGAEA
  • 5
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    Sediment and pore water measurements taken from a fish farming area in Bolinao, Philippines, 2017-06-10 and 2017-06-11 (2019)
    PANGAEA
    In:  Supplement to: Moncada, Chyrene; Hassenrück, Christiane; Gärdes, Astrid; Conaco, Cecilia (2019): Microbial community composition of sediments influenced by intensive mariculture activity. FEMS Microbiology Ecology, 95(2), https://doi.org/10.1093/femsec/fiz006
    Details
    Publication Date: 2024-04-22
    Description: Physicochemical parameters and relative abundance of selected nutrient cycling genes were measured in sediment and pore water samples taken from a fish farming area (Site S3 16◦23.097 N, 119◦55.551 E, depth 12.6m) and a control site (Site S1 16◦22.960 N, 119◦54.723 E, depth 15m) not influenced by fish farming. From each site, five pairs of cores representing five biological replicates were collected. One core from each pair was used for physicochemical analysis while the other cores were used for microbial community analysis. Samples from S1 were collected on 2017-06-10 and samples from S3 were collected the following day. The following parameters were measured from the sediment: grain size distribution, % Carbon (%C), % Nitrogen (%N), % total organic carbon (%Corg), and stable isotope (d13C and d15N) content. The following were measured in the pore water: dissolved organic carbon (DOC), total dissolved nitrogen (TDN), ammonium, phosphate, and silicate. Nitrogen (bacterial ammonia monooxygenase/ amoA and nitrite reductase/ nirK) and sulfur (dissimilatory sulfate reductase/ dsrA and sulfur oxidation/ soxB) cycling genes were quantified and normalized against the abundance of the 16S rRNA gene.
    Keywords: ACUTE; Aquaculture practice in tropical coastal ecosystems - understanding ecological and socio-economic consequences; marine aquaculture; nutrient loading; Philippines
    Type: Dataset
    Format: application/zip, 3 datasets
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    DATA PANGAEA
  • 6
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    Oxygen consumption, hydrogen accumulation, iron accumulation and sulfate reduction measured in incubations of sediment collected from the intertidal sandbank Janssand (2023)
    PANGAEA
    Details
    Publication Date: 2024-04-20
    Description: This data set was collected from incubations of sediment collected from the intertidal sandbank Janssand, behind the back barrier island Spiekeroog, in the German Wadden Sea. The rate of oxygen consumption (microsensor), hydrogen accumulation (GC), iron accumulation (ferrozine, chlorometric), and sulfate reduction (35S sulfate + acid-chromium distillation) were all measured in constantly mixed slurries, with and without the ROS-removing enzymes superoxide dismutase and catalase. It additionally includes depth profiles of oxygen and hydrogen peroxide in cores, determined with amperometric microsensors.
    Keywords: File content; H2O2; intertidal permeable sediments; Iron reduction; Jans1-5; MULT; Multiple investigations; Office Open XML Workbook; Reactive Oxygen Species; sand flat; sulfate reduction; Wadden Sea
    Type: Dataset
    Format: text/tab-separated-values, 2 data points
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    DATA PANGAEA
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