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  • 1
    ISSN: 1432-1211
    Keywords: Key words MHC class II ; Generation of diversity ; SLA-DRB1 ; SLA-DQB ; Sequence
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology , Medicine
    Notes: Abstract  The loci encoding the β chain of the pig major histocompatibility complex (MHC) class II antigens, SLA-DR and -DQ, have been known to exhibit a remarkable degree of allelic polymorphism. Here, to understand the generation of SLA class II polymorphism, 25 SLA-DRB1 and 24 SLA-DQB genes including newly identified 12 SLA-DRB1 and 7 SLA-DQB genes obtained from miniature pigs were analyzed based on the nucleotide and deduced amino acid sequences. Most of the allelic diversity was attributed to the variable sequences which encode a β1 domain consisting of a β-pleated sheet followed by an α helix. In the β1 domain coding region, there were four GC-rich sequences, which have been considered to involve the intra-exon sequence exchange also in other gene evolutions. The first and second GC-rich sequences were χ-like sequences, which have been shown to be a putative recombination signal, and were stably conserved among SLA-DRB1 and DQB genes. These χ-like sequences identified in SLA-DRB1 and SLA-DQB were found to encode the first turning point of the β-pleated sheet and the boundary between the β-pleated sheet and the α helix. Analysis of clustered sequence variation also suggested intra-exon gene conversions in which the χ-like sequences act as putative breakpoints. In addition to point mutations and selection mechanism, intra-exon gene conversions must be an important mechanism in the generation of allelic polymorphism at the SLA-DRB1 and SLA-DQB.
    Type of Medium: Electronic Resource
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  • 2
    Publication Date: 1999-12-02
    Print ISSN: 0093-7711
    Electronic ISSN: 1432-1211
    Topics: Biology , Medicine
    Published by Springer
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  • 3
    Electronic Resource
    Electronic Resource
    [S.l.] : American Institute of Physics (AIP)
    Journal of Applied Physics 70 (1991), S. 3268-3274 
    ISSN: 1089-7550
    Source: AIP Digital Archive
    Topics: Physics
    Notes: Laser sputtering of GaAs, GaP, and GaN has been studied by measuring angle-resolved time-of-flight (TOF) distributions of emitted neutral particles. The observed mean translational energy and sputtering yield were found to show strong forward peaking depending on the laser power densities, thence on the desorption yield. This fact can be explained in terms of postdesorption collisions among desorbed particles as predicted theoretically [I. NoorBatcha, R. R. Lucchese, and Y. Zeiri, J. Chem. Phys. 86, 5816 (1987); 898, 5251 (1988), and Kelly and R. W. Dreyfus, Surf Sci. 198, 263 (1988); Nucl. Instr. Methods B 32, 341 (1988); J. Chem. Phys. 92, 5048 (1990)]. However, the observed velocity distributions of sputtered particles were found to be in contradiction with the so-called shifted Maxwellian, because the best-fitted center of mass velocities for Ga were always found to be negative. In addition, Kelly's Mach number M, estimated from the energy spectra, was found to be significantly larger than those estimated from the yield spectra. It is suggested that energy transfer from the internal states of diatomic molecules to the translational motion of Ga may play an important role in the final TOF spectra.
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  • 4
    ISSN: 1089-7690
    Source: AIP Digital Archive
    Topics: Physics , Chemistry and Pharmacology
    Notes: We have observed, and assigned, the fluorescence excitation spectrum of the 000 band in the 1B1←1A1 electronic transition of pyrimidine, at a resolution of ∼10 MHz. The rotational constants of the 1B1 state, the lowest excited singlet state, are A'=6352±3, B'=5853±3, and C'=3042.0±0.5 MHz. The magnitudes of these constants are not very different from those of the ground (1A1) state. However, the in-plane a and b inertial axes in the 1B1 state are rotated by 90° with respect to those of the 1A1 state. The spectrum also exhibits numerous perturbations, evidenced by the presence of extra lines, anomalous intensities and lifetimes, and shifts of the main lines from their expected positions. The perturbations are strongly magnetic-field dependent, demonstrating that they arise from an intramolecular coupling of the 1B1 state with nearly isoenergetic rovibronic levels of a lower triplet (3B1) state. Models are proposed to account for this behavior based on a deconvolution of the experimental spectrum and simulations of the observed Zeeman effects. The most satisfactory interpretation of the data (in the language of the zero-order states) is obtained if it is assumed that a single rovibronic 1B1 level is spin–orbit coupled to one or a few 3B1 levels, which in turn are coupled via rotationally dependent Coriolis interactions to a dense manifold of background levels, probably those of the 1A1 state. Because the latter coupling is small, typically less than the linewidths in the spectra, it is manifested only in a K'+1 dependence of the lifetimes of selected molecular eigenstates and the reduced g values required to fit the magnetic-field dependence of their spectra.
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  • 5
    ISSN: 1089-7674
    Source: AIP Digital Archive
    Topics: Physics
    Notes: Since the start of the Large Helical Device (LHD) experiment, various attempts have been made to achieve improved plasma performance in LHD [A. Iiyoshi et al., Nucl. Fusion 39, 1245 (1999)]. Recently, an inward-shifted configuration with a magnetic axis position Rax of 3.6 m has been found to exhibit much better plasma performance than the standard configuration with Rax of 3.75 m. A factor of 1.6 enhancement of energy confinement time was achieved over the International Stellarator Scaling 95. This configuration has been predicted to have unfavorable magnetohydrodynamic (MHD) properties, based on linear theory, even though it has significantly better particle-orbit properties, and hence lower neoclassical transport loss. However, no serious confinement degradation due to the MHD activities was observed, resolving favorably the potential conflict between stability and confinement at least up to the realized volume-averaged beta 〈β〉 of 2.4%. An improved radial profile of electron temperature was also achieved in the configuration with magnetic islands, minimized by an external perturbation coil system for the Local Island Divertor (LID). The LID has been proposed for remarkable improvement of plasma confinement like the high (H) mode in tokamaks, and the LID function was suggested in limiter experiments. © 2001 American Institute of Physics.
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  • 6
    Electronic Resource
    Electronic Resource
    [S.l.] : American Institute of Physics (AIP)
    Physics of Fluids 11 (1999), S. 1907-1920 
    ISSN: 1089-7666
    Source: AIP Digital Archive
    Topics: Physics
    Notes: The Dynamic Molecular Collision (DMC) model is constructed for accurate and realistic simulations of rarefied gas flows of nonpolar diatomic molecules by the Direct Simulation Monte Carlo (DSMC) method. This model is applicable for moderate temperatures (up to a few hundred K for nitrogen), where most molecules are in the vibrational ground state and the vibrational degree of freedom can be neglected. In this range, moreover, the rotational energy can be considered as a continuous one. The collisions of diatomic molecules are simulated many times by the Molecular Dynamics (MD) method at various initial conditions. The site to site potential is used as an intermolecular one. The collision cross section is developed from the database obtained by MD simulation and kinetic theory of viscosity coefficient of diatomic molecules. The probability density function of energy after collision is also developed using the database. In order to verify the DMC model, two flow fields are simulated. First, the DMC model is applied to the simulation of the translational and rotational energy distribution at the equilibrium condition and the results are compared with the Maxwell distribution. The results agree very well with each other. Second, the DMC model is applied to the simulation of the rotational relaxation through low and high Mach number normal shock wave. These results also agree very well with the experimental results of Robben and Talbot, although the upstream rotational temperature is a little lower. © 1999 American Institute of Physics.
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  • 7
    Electronic Resource
    Electronic Resource
    [S.l.] : American Institute of Physics (AIP)
    Journal of Applied Physics 78 (1995), S. 5126-5135 
    ISSN: 1089-7550
    Source: AIP Digital Archive
    Topics: Physics
    Notes: Compositional distributions of films laser deposited in vacuo at energy densities 〈1 J/cm2 were found to be partly different from previous observations and theories. Analyzing them, we have inferred that evaporation processes at low energy densities contain decomposition of the target materials and evaporation of the decomposed materials. Based on these analyses, we have concluded that pulsed laser codeposition was one of best pulsed laser deposition methods. To realize this using one laser source, a modified version of pulsed-laser-deposition rapid-sequential-pulsed-laser deposition, is introduced. The dependence of YBa2Cu3O7 films properties on deposition conditions is discussed. Elimination of particulates is demonstrated and good electrical and crystallographic properties as well as suppression of precipitates were achieved in films having the correct stoichiometric composition. © 1995 American Institute of Physics.
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  • 8
    Electronic Resource
    Electronic Resource
    Woodbury, NY : American Institute of Physics (AIP)
    Applied Physics Letters 55 (1989), S. 1318-1320 
    ISSN: 1077-3118
    Source: AIP Digital Archive
    Topics: Physics
    Notes: Charge trapping properties of the interface states present at the AlN/n-GaAs interfaces are investigated through high-frequency capacitance transients. They change their behavior from electron to hole traps with the excursion of surface Fermi level towards the valence band. This observation indicates that it is ionization of the states near midgap, not the hole inversion, which blocks the downward excursion of surface potential in GaAs/ insulator systems. It is also found that these states are well defined in terms of having a single capture cross section within the energy range probed, and furthermore, they are spatially localized at the interface.
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  • 9
    Electronic Resource
    Electronic Resource
    Woodbury, NY : American Institute of Physics (AIP)
    Applied Physics Letters 51 (1987), S. 445-447 
    ISSN: 1077-3118
    Source: AIP Digital Archive
    Topics: Physics
    Notes: Thermally stimulated resonant current peaks are observed in Al0.4Ga0.6As/GaAs triple barrier diodes. These current peaks are interpreted as resonant tunnelings from the first excited electron subband in the first well to the first excited subband and to the second excited subband in the second well. The activation energies for these resonance peaks are measured. The results imply that in the substrate-side well there is a large amount of excess electrons to compensate the positive charge of silicon atoms segregated into the structure during the growth.
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  • 10
    Electronic Resource
    Electronic Resource
    Woodbury, NY : American Institute of Physics (AIP)
    Applied Physics Letters 53 (1988), S. 1390-1392 
    ISSN: 1077-3118
    Source: AIP Digital Archive
    Topics: Physics
    Notes: We have studied the local structure around Zn atoms diffused into the GaAs crystal using the extended x-ray absorption fine structure method. Although Zn atoms are associated with vacancies at the first nearest neighbor (NN) sites, the first NN distance remains constant even where vacancies occur. Extra second NN atoms are located at a distance of 3.35 A(ring) which is a bit less than the distance to position on a hexagonal site, and the third NN atoms are observed at a distance of 3.97 A(ring). From the above results, almost all Zn atoms occupy the substitutional site.
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