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  • 1
    Publication Date: 2023-05-27
    Description: One of the goals of EU BASIN is to understand variability in production across the Atlantic and the impact of this variability on higher trophic levels. One aspect of these investigations is to examine the biomes defined by Longhurst (2007). These biomes are largely based on productivity measured with remote sensing. During MSM 26, mesopelagic fish and size-spectrum data were collected to test the biome classifications of the north Atlantic. In most marine systems, the size-spectrum is a decay function with more, smaller organisms and fewer larger organisms. The intercept of the size-spectrum has been linked to overall productivity while the slope represents the "rate of decay" of this productivity (Zhou 2006, doi:10.1093/plankt/fbi119). A Laser In-Situ Scattering Transmissometer was used to collect size-spectrum data and net collections were made to capture mesopelagic fish. The relationship among the mesopelagic fish size and abundance distributions will be compared to the estimates of production from the size-spectrum data to evaluate the biomes of the stations occupied during MSM 26.
    Keywords: Basin Scale Analysis, Synthesis and Integration; EURO-BASIN
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 2
    Publication Date: 2024-02-02
    Description: A Laser In-Situ Scattering Transmissometer (LISST) was used to collect vertical distribution data of particles from 2.5 to 500 µm in size. The LISST uses a multi-ring detector to measure scattering light of particles from a laser diode. Particles are classified into 32 log-spaced bins and the concentration of each bin is calculated as micro-liters per liter (µl/l). The instrument is rated to a depth of 300 m, and also records temperature and pressure. The sample interval was set to record every second. The LISST was attached to the LOPC frame to conduct casts and allow for particle-size comparisons between the two instruments. The LOPC is rated to a depth of 2000 m, thus a short deployment to a depth of 300 m was first conducted with both instruments. The instruments were then returned to the deck and the LISST removed via a quick release bracket so deep LOPC casts could be continued at a station. Raw LISST size-spectrum data is presented as concentrations for each of the 32 size bins for every second of the cast.
    Keywords: Basin Scale Analysis, Synthesis and Integration; Day of the year; EURO-BASIN; Event label; Laser In-Situ Scattering Transmissometer, LISST-100X, SEQUOIA Scientific, Inc.; Laser Optical Plankton Counter with CTD; LOPC-CTD; Maria S. Merian; MSM26; MSM26_126-10; MSM26_127-13; MSM26_127-22; MSM26_131-11; MSM26_131-4; MSM26_132-1; MSM26_133-14; MSM26_133-7; MSM26_134-16; MSM26_135-1; MSM26_135-10; MSM26_136-19; MSM26_136-9; MSM26_137-16; MSM26_137-7; North Atlantic; Particle volume; Pressure, stress; Temperature, technical; Time of day
    Type: Dataset
    Format: text/tab-separated-values, 569097 data points
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  • 3
    Publication Date: 2024-02-02
    Description: Mesopelagic fish were collected using a 1 m**2 Double-MOCNESS (Multiple Opening and Closing Net and Environmental Sensing System) and 4.5 m**2 IKMT (Isaacs-Kidd midwater trawl). The main portion of the IKMT was 20 mm knotted nylon, and the tail bag was 3 mm knotless nylon. Oblique IKMT tows were made to a maximum depth of 500 m at a tow speed of 3.5 knots. The original cruise plan intended for nighttime IKMT tows, but tow times varied due to operational constraints. The MOCNESS was equipped with 20 nets of 333 µm mesh size; 10 nets per side. The towing speed was 2 knots. Samples were collected to a maximum depth of 1250 m. The first oblique nets sampled from the surface to the max depth, and the other nets sampled depth stratified bins of the water column. MOCNESS hauls were performed during day and night to investigate diel vertical migrations. Mesoplelagic fish were processed on board. All fish were picked from all IKMT nets, most oblique MOCNESS nets, and the left side nets of the depth stratified MOCNESS samples. The Depth stratified nets from the right side of the MOCNESS frame were preserved in 5 % formalin for future quantitative analyses of the nekton. Fish were identified to the lowest possible taxa using Whitehead et al. (1984) and Fahay (2007). Standard length of each fish was measured to the nearest 0.1 mm using a digital caliper. Measured and identified fish were frozen in an -80 °C freezer, and shipped to the University of Hamburg at the end of the cruise.
    Keywords: Basin Scale Analysis, Synthesis and Integration; Date/Time of event; Depth, bottom/max; Depth, top/min; DEPTH, water; D-MOC; Double opening/closing plankton net; EURO-BASIN; Event label; IKMT; Isaac-Kid-Midwater Trawl; Latitude of event; Length; Longitude of event; Maria S. Merian; Method/Device of event; MSM26; MSM26_126-13; MSM26_126-15; MSM26_126-9; MSM26_127-17; MSM26_127-21; MSM26_127-5; MSM26_131-10; MSM26_131-17; MSM26_131-8; MSM26_133-1; MSM26_133-13; MSM26_133-6; MSM26_134-15; MSM26_134-18; MSM26_134-19; MSM26_135-16; MSM26_135-20; MSM26_135-9; MSM26_136-18; MSM26_136-2; MSM26_136-8; MSM26_137-15; North Atlantic; Salinity; Sample ID; Taxon/taxa; Temperature, water; Time in minutes; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 13361 data points
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  • 4
    Publication Date: 2024-02-02
    Description: Mesopelagic fish were collected using a 1 m**2 Double-MOCNESS (Multiple Opening and Closing Net and Environmental Sensing System) and 4.5 m**2 IKMT (Isaacs-Kidd midwater trawl). The main portion of the IKMT was 20 mm knotted nylon, and the tail bag was 3 mm knotless nylon. Oblique IKMT tows were made to a maximum depth of 500 m at a tow speed of 3.5 knots. The original cruise plan intended for nighttime IKMT tows, but tow times varied due to operational constraints. The MOCNESS was equipped with 20 nets of 333 µm mesh size; 10 nets per side. The towing speed was 2 knots. Samples were collected to a maximum depth of 1250 m. The first oblique nets sampled from the surface to the max depth, and the other nets sampled depth stratified bins of the water column. MOCNESS hauls were performed during day and night to investigate diel vertical migrations. Mesoplelagic fish were processed on board. All fish were picked from all IKMT nets, most oblique MOCNESS nets, and the left side nets of the depth stratified MOCNESS samples. The Depth stratified nets from the right side of the MOCNESS frame were preserved in 5 % formalin for future quantitative analyses of the nekton. Fish were identified to the lowest possible taxa using Whitehead et al. (1984) and Fahay (2007). Standard length of each fish was measured to the nearest 0.1 mm using a digital caliper. Measured and identified fish were frozen in an -80 °C freezer, and shipped to the University of Hamburg at the end of the cruise.
    Keywords: Abundance per volume; Basin Scale Analysis, Synthesis and Integration; Date/Time of event; Depth, bottom/max; Depth, top/min; DEPTH, water; D-MOC; Double opening/closing plankton net; EURO-BASIN; Event label; IKMT; Isaac-Kid-Midwater Trawl; Latitude of event; Longitude of event; Maria S. Merian; Method/Device of event; MSM26; MSM26_126-13; MSM26_126-15; MSM26_126-9; MSM26_127-17; MSM26_127-21; MSM26_127-5; MSM26_131-10; MSM26_131-17; MSM26_131-8; MSM26_133-1; MSM26_133-13; MSM26_133-6; MSM26_134-15; MSM26_134-18; MSM26_134-19; MSM26_135-16; MSM26_135-20; MSM26_135-9; MSM26_136-18; MSM26_136-2; MSM26_136-8; MSM26_137-15; North Atlantic; Salinity; Sample ID; Taxon/taxa; Temperature, water; Type; Uniform resource locator/link to reference; Volume
    Type: Dataset
    Format: text/tab-separated-values, 2844 data points
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  • 5
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    In:  http://aquaticcommons.org/id/eprint/15168 | 403 | 2014-05-29 07:25:58 | 15168 | United States National Marine Fisheries Service
    Publication Date: 2021-07-04
    Description: Lengths and ages of sword-fish (Xiphias gladius) estimated from increments on otoliths of larvae collected in the Caribbean Sea, Florida Straits, and off the southeastern United States, indicated two growth phases. Larvae complete yolk and oil globule absorption 5 to 6 days after hatching (DAH). Larvae 〈13 mm preserved standard length (PSL) grow slowly (~0.3 mm/d); larvae from 13 to 115 mm PSL grow rapidly (~6 mm/d). The acceleration in growth rate at 13 days follows an abrupt (within 3 days) change in diet, and in jaw and alimentary canal structure. The diet of swordfish larvae is limited. Larvae 〈8 mm PSL from the Caribbean, Gulf of Mexico, and off the southeastern United States eat exclusively copepods, primarily of one genus, Corycaeus. Larvae 9 to 11 mm eat copepods and chaetognaths; larvae 〉11 mm eat exclusively neustonic fish larvae. This diet indicates that young larvae 〈11 mm occupy the near-surface pelagia, whereas, older and longer larvae are neustonic. Spawning dates for larvae collected in various regions of the western North Atlantic, along with the abundance and spatial distribution of the youngest larvae, indicate that spawning peaks in three seasons and in five regions. Swordfish spawn in the Caribbean Sea, or possibly to the east, in winter, and in the western Gulf of Mexico in spring. Elsewhere swordfish spawn year-round, but spawning peaks in the spring in the north-central Gulf of Mexico, in the summer off southern Florida, and in the spring and early summer off the southeastern United States. The western Gulf Stream frontal zone is the focus of spawning off the southeastern coast of the United States, whereas spawning in the Gulf of Mexico seems to be focused in the vicinity of the Gulf Loop Current. Larvae may use the Gulf of Mexico and the outer continental shelf off the east coast of the United States as nursery areas. Some larvae may be transported northward, but trans-Atlantic transport of larvae is unlikely.
    Keywords: Biology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 778-789
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  • 6
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    In:  http://aquaticcommons.org/id/eprint/14680 | 403 | 2014-02-28 19:37:37 | 14680 | United States National Ocean Service
    Publication Date: 2021-07-01
    Description: Serial, cyclonic, mesoscale eddies arise just north of the Charleston Bump, a topographical rise on the continentalslope and Blake Plateau, and characterize the U.S. outer shelf and upper slope in the region of the Charleston Gyre.This region was transected during the winters of 2000, 2001, and 2002, and hydrographic data and larval fishes werecollected. The hydrodynamics of the cyclonic eddies of the Charleston Gyre shape the distribution of larval fishes bymixing larvae from the outer continental shelf and the Gulf Stream and entraining them into the eddy circulation atthe peripheral margins, the wrap-around filaments. Over all years and transects (those that intercepted eddies andthose that did not), chlorophyll a concentrations, zooplankton displacement volumes, and larval fish concentrations were positively correlated. Chlorophyll a concentrations were highest in filaments that wrapped around eddies, and zooplankton displacement volumes were highest in the continental shelf–Gulf Stream–frontal mix. Overall, the concentration of all larval fishes declined from inshore to offshore with highest concentrations occurring over the outer shelf. Collections produced larvae from 91 fish families representing continental shelf and oceanic species. The larvae of shelf-spawned fishes—Atlantic Menhaden Brevoortia tyrannus, Round Herring Etrumeus teres, Spot Leiostomus xanthurus, and Atlantic Croaker Micropogonias undulatus—were most concentrated over the outer shelf and in the continental shelf–Gulf Stream–frontal mix. The larvae of ocean-spawned fishes—lanternfishes, bristlemouths, and lightfishes—were more evenly dispersed in low concentrations across the outer shelf and upper slope, the highest typically in the Gulf Stream and Sargasso Sea, except for lightfishes that were highest in the continental shelf–Gulf Stream–frontal mix. Detrended correspondence analysis rendered groups of larval fishes that corresponded with a gradient between the continental shelf and Gulf Stream and Sargasso Sea. Eddies propagate northeastward with a residence time on the outer shelf and upper slope of ∼1 month, the same duration as the larval period of most fishes. The pelagic habitat afforded by eddies and fronts of the Charleston Gyre region can be exploited as nursery areas for feeding and growth of larval fishes within the southeastern Atlantic continental shelf ecosystem of the U.S. Eddies, and the nursery habitat they provide, translocate larvae northeastward.
    Keywords: Ecology ; Fisheries ; Oceanography
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 246-259
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  • 7
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    In:  http://aquaticcommons.org/id/eprint/8814 | 403 | 2012-06-12 17:56:16 | 8814 | United States National Marine Fisheries Service
    Publication Date: 2021-06-27
    Description: Fish species of warmwater origin appear in northeasternU.S. coastal waters in the late summer and remain until late fall when the temperate waters cool. The annual abundance and species composition of warm-water species ishighly variable from year to year, and these variables may have effects on the trophic dynamics of this region. Tounderstand this variability, records of warm-water fish occurrence were examined in two neighboring temperate areas, Narragansett Bay and Long Island Sound. The most abundant fish species were the same in both areas, and regional abundances peaked in both areas in the middle of September, four weeks after the maximum temperature in the middle of August. On average, abundance of warm-waterspecies increased throughout the years sampled, although this increase can not be said to be exclusively related totemperature. Weekly mean temperatures between the two locations were highly correlated (r= 0.99; P〈0.001). The warm-water fish faunas were distinctly different in annual abundances in the two areas for each species by year (1987–2000), and these differences ref lect the variability in thetransport processes to temperate estuaries. The results reveal information on the abundance of warm-water fish in relation to trends toward warmer waters in these region
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 89-100
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  • 8
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    In:  http://aquaticcommons.org/id/eprint/9608 | 403 | 2012-08-03 14:46:16 | 9608 | United States National Marine Fisheries Service
    Publication Date: 2021-07-07
    Description: Otoliths of larval and juvenile fish provide a record of age, size, growth, and development (Campana and Neilson,1985; Thorrold and Hare, 2002). However, determining the time of first increment formation in otoliths (Campana, 2001) and assessing the accuracy (deviation from real age)and precision (repeatability of increment counts from the same otolith) of increment counts are prerequisites for using otoliths to study the life history of fish (Campana and Moksness, 1991). For most fish species, first increment deposition occurs either at hatching, a day after hatching, or after first feeding and yolksac absorption (Jones, 1986; Thorrold and Hare, 2002). Increment deposition beforehatching also occurs (Barkmann and Beck, 1976; Radtke and Dean, 1982). If first increment deposition does not occur at hatching, the standard procedure is to add a predetermined number to increment counts to estimate fish age (Campana and Neilson, 1985).
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 544-552
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  • 9
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    In:  rcowen@rsmas.miami.edu | http://aquaticcommons.org/id/eprint/14490 | 403 | 2014-02-13 04:26:39 | 14490 | United States National Marine Fisheries Service
    Publication Date: 2021-06-26
    Description: Plankton and larval fish sampling programs often are limited by a balance between sampling frequency (for precision) and costs. Advancements in sampling techniques hold the potential to add considerable efficiency and, therefore, add sampling frequency to improve precision. We compare a newly developed plankton imaging system, In Situ Ichthyoplankton Imaging System (ISIIS), with a bongo sampler, which is a traditional plankton sampling gear developed in the 1960s. Comparative sampling was conducted along 2 transects ~30–40 km long. Over 2 days, we completed 36 ISIIS tow-yo undulations and 11 bongo oblique tows, each from the surface to within 10 m of the seafloor. Overall, the 2 gears detected comparable numbers of larval fishes, representing similar taxonomic compositions, although larvae captured with the bongo were capable of being identified to lower taxonomic levels, especially larvae in the small (〈5 mm), preflexion stages. Size distributions of the sampled larval fishes differed considerably between these 2 sampling methods, with the size range and mean size of larval fishes larger with ISIIS than with the bongo sampler. The high frequency and fine spatial scale of ISIIS allow it to add considerable sampling precision (i.e., more vertical sections) to plankton surveys. Improvements in the ISIIS technology (including greater depth of field and image resolution) should also increase taxonomic resolution and decrease processing time. When coupled with appropriate net sampling (for the purpose of collecting and verifying the identification of biological samples), the use of ISIIS could improve overall survey design and simultaneously provide detailed, process-oriented information for fisheries scientists and oceanographers.
    Keywords: Biology ; Ecology ; Fisheries
    Repository Name: AquaDocs
    Type: article , TRUE
    Format: application/pdf
    Format: application/pdf
    Format: 1-12
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  • 10
    Publication Date: 2022-05-25
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Fishery Bulletin 106 (2008): 183-193.
    Description: The identification of sea bass (Centropristis) larvae to species is difficult because of similar morphological characters, spawning times, and overlapping species ranges. Black sea bass (Centropristis striata) is an important fishery species and is currently considered to be overfished south of Cape Hatteras, North Carolina. We describe methods for identifying three species of sea bass larvae using polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) assays based on species-specific amplification of rDNA internal transcribed spacer reg ions. The assays were tested against DNA of ten other cooccurring reef fish species to ensure the assay’s specificity. Centropristis larvae were collected on three cruises during cross-shelf transects and were used to validate the assays. Seventysix Centropristis larvae were assayed and 69 (91%) were identified successfully. DNA was not amplified from 5% of the larvae and identification was inconclusive for 3% of the larvae. These assays can be used to identify sea bass eggs and larvae and will help to assess spawning locations, spawning times, and larval dispersal.
    Description: Collection of larvae at sea was supported by funding from the National Science Foundation through OCE 9876565 to C. Jones, S. Thorrold, A. Valle-Levinson, and J. Hare. Additional funding for this project was provided by Office of National Marine Sanctuaries and by Grays Reef National Marine Sanctuary.
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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